View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_15 (Length: 584)
Name: NF17277_low_15
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 244 - 577
Target Start/End: Original strand, 3111798 - 3112131
Alignment:
| Q |
244 |
cttaccatgtaccttacttctcaaaaaccttctacccttccttttccttgaactgatattaccattttctcttttcttggccaatacaacatctacgaga |
343 |
Q |
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| T |
3111798 |
cttaccatgtaccttacttctcaaaaaccttctactcttccttttccttgaactgatattaccattttctcttttcttggccaatacaacatctacgaga |
3111897 |
T |
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| Q |
344 |
ttattcacaccaactttttcattatcaacaaataaagaacnnnnnnncacaactgaatcttgatgatttttaagatgaaaatcaaacccttttaattctt |
443 |
Q |
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| T |
3111898 |
ttattcacaccaactttttcattatcaacaaataaagaacttttttgcacaactgaatcttgatgatttttaagatgaaaatcaaacccttttaattctt |
3111997 |
T |
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| Q |
444 |
gttctttctcatattgatcccacttagattgaacaaaaaacccaagataagcccaaagagtaaccaaaatcagacacaaaactaaccggttgcttccaat |
543 |
Q |
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| T |
3111998 |
gttctttctcatattgatcccacttagattgaacaaaaaacccaagataagcccaaagagtaaccaaaatcagacacaaaactaaccggttgcttccaat |
3112097 |
T |
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| Q |
544 |
ccaagaaaacgatgcattactactacctttgctt |
577 |
Q |
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| T |
3112098 |
ccaagaaaacgatgcattactactacctttgctt |
3112131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 5 - 289
Target Start/End: Complemental strand, 26269506 - 26269222
Alignment:
| Q |
5 |
tccatcattgaaagtggtgctccagtcatagaaagttcatgaaatatcaacacaaaactctttgacataacaagttttgcaaattcacttttcttgtcac |
104 |
Q |
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| T |
26269506 |
tccatcattgaaagtggtgctccagtcatagaaagctcatgaaatatcaatacaaaactctttgacataacaacttgtgcaaattcacttttcttgtcac |
26269407 |
T |
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| Q |
105 |
attttccacaacccttctcattagtactcaatttcaagattttgtcctccattgaatcaaatggaccaacaagaggaatttctaactccttttcctctat |
204 |
Q |
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| T |
26269406 |
attttccacaacccttctcattagtactcaatttcaagattttgtcctccattgaaccaaatggaccaacaagaggaatttctaactccttttcctctat |
26269307 |
T |
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| Q |
205 |
attaccaaaatttccatcaaatttcaattttcttttatgcttaccatgtaccttacttctcaaaaaccttctacccttccttttc |
289 |
Q |
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| T |
26269306 |
attaccaaaatttccatcaactttcaattttcttttatgcttaccatgtaacttacttctcaatgatcttctactcctccttttc |
26269222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 3111600 - 3111799
Alignment:
| Q |
1 |
caattccatcattgaaagtggtgctccagtcatagaaagttcatgaaatatcaacacaaaactctttgacataacaagttttgcaaattcacttttcttg |
100 |
Q |
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| T |
3111600 |
caattccatcattgaaagtggtgctccagtcatagaaagttcatgaaatatcaacacaaaactctttgacataacaagttttgcaaattcacttttcttg |
3111699 |
T |
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| Q |
101 |
tcacattttccacaacccttctcattagtactcaatttcaagattttgtcctccattgaatcaaatggaccaacaagaggaatttctaactccttttcct |
200 |
Q |
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| T |
3111700 |
tcacattttccacaacccttctcattagtactcaatttcaagattttgtcctccattgaatcaaatggaccaacaagaggaatttctaactccttttcct |
3111799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 314 - 577
Target Start/End: Complemental strand, 26269227 - 26268964
Alignment:
| Q |
314 |
cttttcttggccaatacaacatctacgagattattcacaccaactttttcattatcaacaaataaagaacnnnnnnncacaactgaatcttgatgatttt |
413 |
Q |
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||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
26269227 |
cttttcttggccaatacaatatccaggagattattcacaccaactttttcattatcaacaaataaagaactttttttgacaaccgaatcttgatgatttt |
26269128 |
T |
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| Q |
414 |
taagatgaaaatcaaacccttttaattcttgttctttctcatattgatcccacttagattgaacaaaaaacccaagataagcccaaagagtaaccaaaat |
513 |
Q |
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| T |
26269127 |
taagatgaaaatcaaacccttttagttcttgttctttctcataatgatcccacttagattgaacaaaaaaaccaagataagcccaaagggtaaccaaaac |
26269028 |
T |
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| Q |
514 |
cagacacaaaactaaccggttgcttccaatccaagaaaacgatgcattactactacctttgctt |
577 |
Q |
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| T |
26269027 |
cagccacaatactaatcggttgcttccaatccaagaaaacgatgcattactactacctttgctt |
26268964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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