View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17277_low_153 (Length: 238)

Name: NF17277_low_153
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17277_low_153
NF17277_low_153
[»] chr4 (2 HSPs)
chr4 (1-176)||(26171066-26171240)
chr4 (168-222)||(26171554-26171608)
[»] chr7 (1 HSPs)
chr7 (94-222)||(42448314-42448438)
[»] chr1 (2 HSPs)
chr1 (1-109)||(6613142-6613248)
chr1 (160-222)||(6613068-6613130)
[»] chr2 (1 HSPs)
chr2 (161-220)||(21733334-21733393)
[»] chr3 (1 HSPs)
chr3 (161-220)||(3671832-3671891)
[»] chr6 (3 HSPs)
chr6 (93-190)||(26064369-26064459)
chr6 (93-190)||(26084338-26084428)
chr6 (95-157)||(25516101-25516164)


Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 26171066 - 26171240
Alignment:
Q  1 cataatacattgtaattattagtgtgttttgattatatgcaatagagagagattttcataacgaattgaggggaataaccttaatgatataaagaaagtc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26171066 cataatacattgtaattattagtgtgttttgattatatgcaatagagagagattttcataacgaattgaggg-aataaccttaatgatataaagaaagtc 26171164  T
Q  101 aaaattgcagcaatttgatataaagagataaaaacacataattagaaccacaaactctgctactatattcacttta 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26171165 aaaattgcagcaatttgatataaagagataaaaacacataattagaaccacaaactctgctactatattcacttta 26171240  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 26171554 - 26171608
Alignment:
Q  168 ttcactttatgcagtaatctctttcaacaccaagttatcatgccatgaacccaat 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26171554 ttcactttatgcagtaatctctttcaacaccaagttatcatgccatgaacccaat 26171608  T

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Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 94 - 222
Target Start/End: Original strand, 42448314 - 42448438
Alignment:
Q  94 gaaagtcaaaattgcagcaatttgatataaagagataaaaacacataattagaaccacaaactctgctactatattcactttatgcagtaatctctttca 193  Q
    |||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||  | ||||| |||||||||||    
T  42448314 gaaagtcaaaattgcaccaatttgatataaagagataaaaacacat--ttagaaccacaagctctgctactatattcac--tctgcagcaatctctttca 42448409  T
Q  194 acaccaagttatcatgccatgaacccaat 222  Q
    |||||||||| ||||||||||||| ||||    
T  42448410 acaccaagttgtcatgccatgaacacaat 42448438  T

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Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 6613248 - 6613142
Alignment:
Q  1 cataatacattgtaattattagtgtgtttt-gattatatgcaatagagagagattttcataacgaattgaggggaataaccttaatgatataaagaaagt 99  Q
    |||| ||||||||||||||||| ||||||| | ||||||||||  |||||||||||||||||||||||||||  | ||||||| ||||||||||||||||    
T  6613248 catattacattgtaattattagggtgtttttggttatatgcaa--gagagagattttcataacgaattgaggata-taaccttgatgatataaagaaagt 6613152  T
Q  100 caaaattgca 109  Q
    ||||||||||    
T  6613151 caaaattgca 6613142  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 6613130 - 6613068
Alignment:
Q  160 ctactatattcactttatgcagtaatctctttcaacaccaagttatcatgccatgaacccaat 222  Q
    ||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||    
T  6613130 ctactatattcactttatgcagtgatctctttcaacaccaagttgtcgtgccatgaacccaat 6613068  T

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Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 21733393 - 21733334
Alignment:
Q  161 tactatattcactttatgcagtaatctctttcaacaccaagttatcatgccatgaaccca 220  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21733393 tactatattcactttatgcagtaatctttttcaacaccaagttatcatgccatgaaccca 21733334  T

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Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 3671832 - 3671891
Alignment:
Q  161 tactatattcactttatgcagtaatctctttcaacaccaagttatcatgccatgaaccca 220  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||    
T  3671832 tactatattcactttatgcagtaatatctttcaacaccaagttgtcatgccaagaaccca 3671891  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 190
Target Start/End: Complemental strand, 26064459 - 26064369
Alignment:
Q  93 agaaagtcaaaattgcagcaatttgatataaagagataaaaacacataattagaaccacaaactctgctactatattcactttatgcagtaatctctt 190  Q
    ||||||| ||||||||| ||||||||||||||||| ||||   ||| |||||||||||||||||     |||||||||||||| |||| ||| |||||    
T  26064459 agaaagtaaaaattgcaccaatttgatataaagaggtaaa---acacaattagaaccacaaact----aactatattcactttctgcattaacctctt 26064369  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 190
Target Start/End: Complemental strand, 26084428 - 26084338
Alignment:
Q  93 agaaagtcaaaattgcagcaatttgatataaagagataaaaacacataattagaaccacaaactctgctactatattcactttatgcagtaatctctt 190  Q
    ||||||| ||||||||| ||||||||||||||||| ||||   ||| |||||||||||||||||     |||||||||||||| |||| ||| |||||    
T  26084428 agaaagtaaaaattgcaccaatttgatataaagaggtaaa---acacaattagaaccacaaact----aactatattcactttctgcattaacctctt 26084338  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 25516164 - 25516101
Alignment:
Q  95 aaagtcaaaattgcagcaatttgatataaagagat-aaaaacacataattagaaccacaaactc 157  Q
    ||||| ||||||||| ||||||||||||||| ||| ||||| ||| | ||||||||||||||||    
T  25516164 aaagtaaaaattgcaccaatttgatataaagcgataaaaaaaacacatttagaaccacaaactc 25516101  T

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