View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_163 (Length: 232)
Name: NF17277_low_163
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_163 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 217
Target Start/End: Original strand, 14873043 - 14873249
Alignment:
| Q |
11 |
agcaaaggaaattcatacgaacattagttcaaggtttacaagggagaaattatgaatctaggttttggaccacccatagtaggttggttaattttgttct |
110 |
Q |
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| T |
14873043 |
agcaaaggaaattcatacgaacattagttcaaggtttacaagggagaaattatgaatctaggttttggaccacccatagtaggttggttaattttgttct |
14873142 |
T |
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| Q |
111 |
taagcacaccatccaactctttaatgaacctctccatggctttagttggcaaacaaactggtataaccaaaccttctattcctttagcatttttaaaagg |
210 |
Q |
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| T |
14873143 |
taagcacaccatccaactctttaatgaacctctccatggctttagttggcaaacaaactggtataaccaaaccttctattcctttagcatttttaaatgg |
14873242 |
T |
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| Q |
211 |
tatatac |
217 |
Q |
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||||||| |
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| T |
14873243 |
tatatac |
14873249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 14766836 - 14767041
Alignment:
| Q |
11 |
agcaaaggaaattcatacgaacattagttcaaggtttacaagggagaaattatgaatctaggttttggaccacccatagtaggttggttaattttgttct |
110 |
Q |
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||||||||||||| | || |||||||||| ||||| ||||||| |||||| ||||| ||||||||||||||||| |||||||||||||| || ||||||| |
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| T |
14766836 |
agcaaaggaaattgaaacaaacattagtttaaggtctacaaggaagaaataatgaaactaggttttggaccaccaatagtaggttggttgatgttgttct |
14766935 |
T |
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| Q |
111 |
taagcacaccatccaactctttaatgaacctctccatggctttagttggcaaacaaactggtataaccaaaccttctattcctttagcatttttaaaagg |
210 |
Q |
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| T |
14766936 |
taagcacactatctaactctttaacgaacttctccatggcttgagctggtaaacaaagtggtataaccaaaccttcctctcctttagcatttttgaaagg |
14767035 |
T |
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| Q |
211 |
tatata |
216 |
Q |
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|||||| |
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| T |
14767036 |
tatata |
14767041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 81 - 185
Target Start/End: Original strand, 14877844 - 14877948
Alignment:
| Q |
81 |
cacccatagtaggttggttaattttgttcttaagcacaccatccaactctttaatgaacctctccatggctttagttggcaaacaaactggtataaccaa |
180 |
Q |
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||||| ||||||| |||||||| ||||||||||| |||| |||||||||||||| |||||||||||| ||| |||||||||| |||||||||||||||| |
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| T |
14877844 |
cacccttagtaggctggttaatgttgttcttaagaacactatccaactctttaaccaacctctccatgacttgagttggcaaaaaaactggtataaccaa |
14877943 |
T |
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| Q |
181 |
acctt |
185 |
Q |
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||||| |
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| T |
14877944 |
acctt |
14877948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 108 - 215
Target Start/End: Original strand, 14786016 - 14786123
Alignment:
| Q |
108 |
tcttaagcacaccatccaactctttaatgaacctctccatggctttagttggcaaacaaactggtataaccaaaccttctattcctttagcatttttaaa |
207 |
Q |
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|||||||||||| ||||| ||||||| |||||||||||| ||| | |||| ||| ||| |||||||||||||||||| ||||||||||||||| || |
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| T |
14786016 |
tcttaagcacactatccatttctttaacaaacctctccatgacttgatttggaaaataaaatggtataaccaaaccttcctctcctttagcatttttgaa |
14786115 |
T |
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| Q |
208 |
aggtatat |
215 |
Q |
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|||||||| |
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| T |
14786116 |
aggtatat |
14786123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 215
Target Start/End: Complemental strand, 14759852 - 14759762
Alignment:
| Q |
125 |
aactctttaatgaacctctccatggctttagttggcaaacaaactggtataaccaaaccttctattcctttagcatttttaaaaggtatat |
215 |
Q |
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| T |
14759852 |
aactctttaaccaacctctccatgacttgagcaggcaagaaaaacggtataaccaaaccttcttctcctttagcatttttgaaaggtatat |
14759762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 118
Target Start/End: Original strand, 14872228 - 14872305
Alignment:
| Q |
41 |
aaggtttacaagggagaaattatgaatctaggttttggaccacccatagtaggttggttaattttgttcttaagcaca |
118 |
Q |
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| T |
14872228 |
aaggtttacaatgaagaaataacgagactaggtttcggaccatccttagtaggttggctaatgttgttcttaagcaca |
14872305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 81 - 216
Target Start/End: Original strand, 83904 - 84039
Alignment:
| Q |
81 |
cacccatagtaggttggttaattttgttcttaagcacaccatccaactctttaatgaacctctccatggctttagttggcaaacaaactggtataaccaa |
180 |
Q |
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||||||||||||| |||||| ||||||||||| || |||||||||||||| |||||||| ||| ||| |||||| ||| ||||||||||||| || |
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| T |
83904 |
cacccatagtaggcgagttaatgttgttcttaagaactttatccaactctttaaccaacctctcgatgacttgagttggaaaaaaaactggtataacaaa |
84003 |
T |
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| Q |
181 |
accttctattcctttagcatttttaaaaggtatata |
216 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
84004 |
accttcctctcctttagcatttttaaaaggtatata |
84039 |
T |
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