View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17277_low_17 (Length: 565)

Name: NF17277_low_17
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17277_low_17
NF17277_low_17
[»] chr4 (11 HSPs)
chr4 (130-547)||(7887061-7887474)
chr4 (446-547)||(6772240-6772341)
chr4 (31-126)||(7886933-7887025)
chr4 (446-540)||(6533502-6533596)
chr4 (452-547)||(6757492-6757587)
chr4 (460-546)||(4134618-4134704)
chr4 (464-546)||(4334670-4334752)
chr4 (460-546)||(4344128-4344214)
chr4 (460-546)||(4352407-4352493)
chr4 (431-546)||(6623232-6623347)
chr4 (462-542)||(4125234-4125314)
[»] chr7 (3 HSPs)
chr7 (331-543)||(18934463-18934675)
chr7 (331-547)||(34726115-34726331)
chr7 (338-434)||(34716400-34716496)
[»] scaffold0294 (1 HSPs)
scaffold0294 (460-539)||(9480-9559)
[»] chr6 (10 HSPs)
chr6 (463-539)||(5382750-5382826)
chr6 (446-514)||(5424782-5424850)
chr6 (482-542)||(5690969-5691029)
chr6 (460-543)||(5074551-5074634)
chr6 (420-543)||(5342765-5342888)
chr6 (460-546)||(5396188-5396274)
chr6 (423-543)||(5147697-5147817)
chr6 (446-543)||(5355454-5355551)
chr6 (431-543)||(5175996-5176108)
chr6 (431-543)||(5277823-5277935)
[»] scaffold0286 (1 HSPs)
scaffold0286 (446-546)||(5755-5855)


Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 130 - 547
Target Start/End: Original strand, 7887061 - 7887474
Alignment:
Q  130 tgttcttggtcttggatttcctcgataataaccagtctttcctattcctttttcgactggttttcgtgtccattttagtgtattattatgcagtgctata 229  Q
    ||||||||||| ||||||||||| |||| |||   |||||||||||| |||| ||  |||| ||  | ||||||||||| ||||||||||||||||||||    
T  7887061 tgttcttggtcatggatttcctcaataacaacagatctttcctattcgttttccggttggtgtttttatccattttagtctattattatgcagtgctata 7887160  T
Q  230 attcctctggtaaagataaattaaatactaatagaaagcacaaaataagcactgtgaaacattaaattaactaggtcacaagagcaaaacaaattga-tt 328  Q
    ||||||||||||||||| ||||||||||||||| ||| |||||||||||     ||| |||||||||||||||||||||||||||||||||| |||| ||    
T  7887161 attcctctggtaaagatgaattaaatactaataaaaaacacaaaataag-----tgagacattaaattaactaggtcacaagagcaaaacaagttgaatt 7887255  T
Q  329 catacctgagactttctccacactcgttccagattggaatatttcaagacaacagcaactaaagtatctagatgaaagtctgcaggtatatatcttagag 428  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||| ||| ||    
T  7887256 aatacctgagactttctccacactcgttccagattggaatatttcaagacaacagcaactagagtatcttgatgaaagtcggcaggtatatattttaaag 7887355  T
Q  429 ggaatccatgccaactaagccacctaagatgtcttgaaagatatttgtaatcaccattaagttgtacgccagcaagttgaagcaatttcagcttgtccat 528  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||| ||| | |||||||||||    
T  7887356 ggaatccatgccaactaagccacctaagatgtcttgaaagatatttgtaatctccattaagttgtatgccaacaagttgaagaaatcttagcttgtccat 7887455  T
Q  529 cttctcaaatgctttggtt 547  Q
    |||||||||||||||||||    
T  7887456 cttctcaaatgctttggtt 7887474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 446 - 547
Target Start/End: Complemental strand, 6772341 - 6772240
Alignment:
Q  446 agccacctaagatgtcttgaaagatatttgtaatcaccattaagttgtacgccagcaagttgaagcaatttcagcttgtccatcttctcaaatgctttgg 545  Q
    ||||||||||||| ||||||||| ||||| ||||| || |||||||| || ||||| ||  |||||||| | || |||| |||||||| |||||||||||    
T  6772341 agccacctaagatctcttgaaaggtatttataatctcccttaagttgcacaccagcgaggcgaagcaatctgagtttgttcatcttcttaaatgctttgg 6772242  T
Q  546 tt 547  Q
    ||    
T  6772241 tt 6772240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 7886933 - 7887025
Alignment:
Q  31 tgaaagatcaattatctgactgtaaactggccaaatatttcttttgctgttgatgtggagagttaatactgaaatgatatagagtgtaaccagatc 126  Q
    |||||||| ||||||| |||||||| || || | |||||||||||| | ||| ||   |||||||||||||||||| |||||||||||||||||||    
T  7886933 tgaaagatgaattatcggactgtaaccttgcaatatatttcttttgttattgttg---agagttaatactgaaatggtatagagtgtaaccagatc 7887025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 446 - 540
Target Start/End: Original strand, 6533502 - 6533596
Alignment:
Q  446 agccacctaagatgtcttgaaagatatttgtaatcaccattaagttgtacgccagcaagttgaagcaatttcagcttgtccatcttctcaaatgc 540  Q
    ||||| ||||||| |||||||||| ||||  |||| ||||| ||||| || |||||||||||||||||| | ||||| | |||||||| ||||||    
T  6533502 agccatctaagatctcttgaaagacatttaaaatctccattcagttgcacaccagcaagttgaagcaatctgagcttattcatcttcttaaatgc 6533596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 452 - 547
Target Start/End: Complemental strand, 6757587 - 6757492
Alignment:
Q  452 ctaagatgtcttgaaagatatttgtaatcaccattaagttgtacgccagcaagttgaagcaatttcagcttgtccatcttctcaaatgctttggtt 547  Q
    ||||||| || ||||||||||||  |||| |||||||| ||||| ||| ||||||| |||||| | || || | |||||||| |||||||||||||    
T  6757587 ctaagatctcctgaaagatatttaaaatctccattaagctgtaccccaacaagttgtagcaatctgagtttattcatcttcttaaatgctttggtt 6757492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 546
Target Start/End: Original strand, 4134618 - 4134704
Alignment:
Q  460 tcttgaaagatatttgtaatcaccattaagttgtacgccagcaagttgaagcaatttcagcttgtccatcttctcaaatgctttggt 546  Q
    |||||||||||||||  |||| |||| ||||||||| |||| | ||||||||||| |||| || | ||| ||||||||||| |||||    
T  4134618 tcttgaaagatatttaaaatctccatcaagttgtacaccagaaggttgaagcaatctcagtttcttcatgttctcaaatgcattggt 4134704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 464 - 546
Target Start/End: Complemental strand, 4334752 - 4334670
Alignment:
Q  464 gaaagatatttgtaatcaccattaagttgtacgccagcaagttgaagcaatttcagcttgtccatcttctcaaatgctttggt 546  Q
    |||||||||||  |||| |||| ||||||| |||||| ||||||||||||| | || || | |||||||| ||||||||||||    
T  4334752 gaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtttcttcatcttcttaaatgctttggt 4334670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 546
Target Start/End: Complemental strand, 4344214 - 4344128
Alignment:
Q  460 tcttgaaagatatttgtaatcaccattaagttgtacgccagcaagttgaagcaatttcagcttgtccatcttctcaaatgctttggt 546  Q
    |||||||||||||||  |||| |||| ||||||||| |||| |||||| |||||| | || || | ||| |||||||||||||||||    
T  4344214 tcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctaagtttcttcatgttctcaaatgctttggt 4344128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 546
Target Start/End: Complemental strand, 4352493 - 4352407
Alignment:
Q  460 tcttgaaagatatttgtaatcaccattaagttgtacgccagcaagttgaagcaatttcagcttgtccatcttctcaaatgctttggt 546  Q
    |||||||||||||||  |||| |||| ||||||||| |||| |||||| |||||| | || || | ||| |||||||||||||||||    
T  4352493 tcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttcttcatgttctcaaatgctttggt 4352407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 546
Target Start/End: Original strand, 6623232 - 6623347
Alignment:
Q  431 aatccatgccaactaagccacctaagatgtcttgaaagatatttgtaatcaccattaagttgtacgccagcaagttgaagcaatttcagcttgtccatct 530  Q
    |||||||||||   |||||||||||| | || |||||| |||||  |||| |||||||| || || || | ||||||||||||| | || || | |||||    
T  6623232 aatccatgccagtaaagccacctaagttctcctgaaaggtatttaaaatctccattaagctgaaccccggaaagttgaagcaatctgagtttattcatct 6623331  T
Q  531 tctcaaatgctttggt 546  Q
    ||| ||||||||||||    
T  6623332 tcttaaatgctttggt 6623347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 462 - 542
Target Start/End: Original strand, 4125234 - 4125314
Alignment:
Q  462 ttgaaagatatttgtaatcaccattaagttgtacgccagcaagttgaagcaatttcagcttgtccatcttctcaaatgctt 542  Q
    |||||||||||||  |||| |||| ||||||| | |||| ||||||||||||| | || || | |||||||| ||||||||    
T  4125234 ttgaaagatatttaaaatctccatcaagttgtgcaccagaaagttgaagcaatctgagtttcttcatcttcttaaatgctt 4125314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 3e-40; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 331 - 543
Target Start/End: Complemental strand, 18934675 - 18934463
Alignment:
Q  331 tacctgagactttctccacactcgttccagattggaatatttcaagacaacagcaactaaagtatctagatgaaagtctgcaggtatatatcttagaggg 430  Q
    |||||| ||||| ||||||||||||||||||||||||||||| ||| ||||||| || | |   ||| |||||||||| || ||| || || ||| |||     
T  18934675 tacctgggacttcctccacactcgttccagattggaatattttaagtcaacagccacgatacattcttgatgaaagtcagctggtgtacattttaaagga 18934576  T
Q  431 aatccatgccaactaagccacctaagatgtcttgaaagatatttgtaatcaccattaagttgtacgccagcaagttgaagcaatttcagcttgtccatct 530  Q
    ||||||||||||| |||| |  |||||| | | ||||||||||||||||| |||||||||||||| |||| ||||||||||||||| ||||| | |||||    
T  18934575 aatccatgccaacaaagcaatataagatctttcgaaagatatttgtaatctccattaagttgtacaccagaaagttgaagcaatttaagcttattcatct 18934476  T
Q  531 tctcaaatgcttt 543  Q
    |||| ||||||||    
T  18934475 tctcgaatgcttt 18934463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 331 - 547
Target Start/End: Original strand, 34726115 - 34726331
Alignment:
Q  331 tacctgagactttctccacactcgttccagattggaatatttcaagacaacagcaactaaagtatctagatgaaagtctgcaggtatatatcttagaggg 430  Q
    |||||| |||||  |||||||| |||| |||| ||||||||| ||  ||||||||||||||   ||| ||||||| ||| | ||| ||||  ||| |||     
T  34726115 tacctgggacttcttccacacttgttcaagatgggaatattttaaatcaacagcaactaaatgttcttgatgaaactcttctggtgtatactttaaagga 34726214  T
Q  431 aatccatgccaactaagccacctaagatgtcttgaaagatatttgtaatcaccattaagttgtacgccagcaagttgaagcaatttcagcttgtccatct 530  Q
    ||||||||||||| |||||| | || || ||| ||||||||||||||||  || | |||||||||||||||||| ||||| ||||| ||||| |  ||||    
T  34726215 aatccatgccaacaaagccatcgaatatctctggaaagatatttgtaatttccttcaagttgtacgccagcaagctgaagaaatttaagcttattgatct 34726314  T
Q  531 tctcaaatgctttggtt 547  Q
    |||||||  ||||||||    
T  34726315 tctcaaaatctttggtt 34726331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 338 - 434
Target Start/End: Original strand, 34716400 - 34716496
Alignment:
Q  338 gactttctccacactcgttccagattggaatatttcaagacaacagcaactaaagtatctagatgaaagtctgcaggtatatatcttagagggaatc 434  Q
    |||||| |||||||||||||||||||||||||||| ||  ||||||||||||||   ||| ||| ||||||||| ||| || || ||| ||||||||    
T  34716400 gactttttccacactcgttccagattggaatattttaaatcaacagcaactaaatgttcttgataaaagtctgctggtgtacattttaaagggaatc 34716496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 460 - 539
Target Start/End: Original strand, 9480 - 9559
Alignment:
Q  460 tcttgaaagatatttgtaatcaccattaagttgtacgccagcaagttgaagcaatttcagcttgtccatcttctcaaatg 539  Q
    |||||||||||| | | |||| |||| ||||||||| |||||||||||||||||| | ||  | ||||||||||||||||    
T  9480 tcttgaaagatactcgaaatctccatcaagttgtactccagcaagttgaagcaatcttagtctctccatcttctcaaatg 9559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 463 - 539
Target Start/End: Complemental strand, 5382826 - 5382750
Alignment:
Q  463 tgaaagatatttgtaatcaccattaagttgtacgccagcaagttgaagcaatttcagcttgtccatcttctcaaatg 539  Q
    ||||||||| ||| |||| |||| ||||||||| |||||||||||||||||| | ||  | |||||||||| |||||    
T  5382826 tgaaagatacttgaaatctccatcaagttgtactccagcaagttgaagcaatcttagtctttccatcttcttaaatg 5382750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 446 - 514
Target Start/End: Complemental strand, 5424850 - 5424782
Alignment:
Q  446 agccacctaagatgtcttgaaagatatttgtaatcaccattaagttgtacgccagcaagttgaagcaat 514  Q
    ||||| || |||| ||| |||||||||||  |||| |||||||||| ||| ||||||||||||||||||    
T  5424850 agccatctcagatttctcgaaagatatttaaaatctccattaagttttaccccagcaagttgaagcaat 5424782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 482 - 542
Target Start/End: Original strand, 5690969 - 5691029
Alignment:
Q  482 ccattaagttgtacgccagcaagttgaagcaatttcagcttgtccatcttctcaaatgctt 542  Q
    |||| ||||| ||| ||||||||||||| |||| |||| || |||||||||||||||||||    
T  5690969 ccatcaagttctactccagcaagttgaaacaatctcagtttttccatcttctcaaatgctt 5691029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 543
Target Start/End: Original strand, 5074551 - 5074634
Alignment:
Q  460 tcttgaaagatatttgtaatcaccattaagttgtacgccagcaagttgaagcaatttcagcttgtccatcttctcaaatgcttt 543  Q
    ||||||||||| ||   |||| |||| ||||||||| ||||||||||||||||||   || || |||||||||| |||||||||    
T  5074551 tcttgaaagatgttcaaaatccccatcaagttgtacaccagcaagttgaagcaatcgaagtttttccatcttcttaaatgcttt 5074634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 543
Target Start/End: Complemental strand, 5342888 - 5342765
Alignment:
Q  420 atcttagagggaatccatgccaactaagccacctaagatgtcttgaaagatatttgtaatcaccattaagttgtacgccagcaagttgaagcaatttcag 519  Q
    |||||| ||| ||||||| |||||  ||||| || || | ||| |||||||| |   |||| |||| |||||||||||||| ||||||||||||| | ||    
T  5342888 atcttaaaggaaatccattccaacatagccatcttagttttctagaaagatagtcaaaatctccatcaagttgtacgccagaaagttgaagcaatcttag 5342789  T
Q  520 cttgtccatcttctcaaatgcttt 543  Q
     || | |||||| |||||||||||    
T  5342788 tttattcatcttttcaaatgcttt 5342765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 546
Target Start/End: Complemental strand, 5396274 - 5396188
Alignment:
Q  460 tcttgaaagatatttgtaatcaccattaagttgtacgccagcaagttgaagcaatttcagcttgtccatcttctcaaatgctttggt 546  Q
    ||||||||||||||   ||||||||| ||||||||  |||||||||||||||| | | || || | ||||||||  |||||||||||    
T  5396274 tcttgaaagatattcaaaatcaccatcaagttgtaaaccagcaagttgaagcagtctgagttttttcatcttcttgaatgctttggt 5396188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 543
Target Start/End: Original strand, 5147697 - 5147817
Alignment:
Q  423 ttagagggaatccatgccaactaagccacctaagatgtcttgaaagatatttgtaatcaccattaagttgtacgccagcaagttgaagcaatttcag-ct 521  Q
    ||||||| ||||||| ||||  |||||| || |||| ||| ||||  ||||   |||| |||| ||||||||| |||| ||||||||||||| |||| ||    
T  5147697 ttagaggaaatccattccaagaaagccatctcagatttctcgaaatgtattcaaaatccccatcaagttgtactccagtaagttgaagcaatctcagtct 5147796  T
Q  522 tgtccatcttctcaaatgcttt 543  Q
    ||| |||||||| |||||||||    
T  5147797 tgt-catcttcttaaatgcttt 5147817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 543
Target Start/End: Original strand, 5355454 - 5355551
Alignment:
Q  446 agccacctaagatgtcttgaaagatatttgtaatcaccattaagttgtacgccagcaagttgaagcaatttcagcttgtccatcttctcaaatgcttt 543  Q
    |||||||| |||| |||||||||| |||   |||  |||| ||||| ||| ||||||||| |||||||||||||  | | |||||||| |||||||||    
T  5355454 agccacctcagatttcttgaaagacattcaaaatttccatcaagttttactccagcaagtagaagcaatttcagtctcttcatcttcttaaatgcttt 5355551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 431 - 543
Target Start/End: Complemental strand, 5176108 - 5175996
Alignment:
Q  431 aatccatgccaactaagccacctaagatgtcttgaaagatatttgtaatcaccattaagttgtacgccagcaagttgaagcaatttcagcttgtccatct 530  Q
    ||||||| ||||  |||||| || |||| |||||||||||| |   |||| |||| |||||| || |||||||||||||||||  | || || | ||| |    
T  5176108 aatccattccaagaaagccatctcagatttcttgaaagatactcaaaatccccatcaagttgcacaccagcaagttgaagcaacctgagtttcttcatgt 5176009  T
Q  531 tctcaaatgcttt 543  Q
    |||||||||||||    
T  5176008 tctcaaatgcttt 5175996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 431 - 543
Target Start/End: Complemental strand, 5277935 - 5277823
Alignment:
Q  431 aatccatgccaactaagccacctaagatgtcttgaaagatatttgtaatcaccattaagttgtacgccagcaagttgaagcaatttcagcttgtccatct 530  Q
    ||||||| ||||  |||||| || |||| |||||||||||| |   |||| |||| |||||| || |||||||||||||||||  | || || | ||| |    
T  5277935 aatccattccaagaaagccatctcagatttcttgaaagatactcaaaatccccatcaagttgcacaccagcaagttgaagcaaactgagtttcttcatgt 5277836  T
Q  531 tctcaaatgcttt 543  Q
    |||||||||||||    
T  5277835 tctcaaatgcttt 5277823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 446 - 546
Target Start/End: Complemental strand, 5855 - 5755
Alignment:
Q  446 agccacctaagatgtcttgaaagatatttgtaatcaccattaagttgtacgccagcaagttgaagcaatttcagcttgtccatcttctcaaatgctttgg 545  Q
    ||||||||||| | || |||||| |||||  |||| |||||||| || || || | ||||||||||||| | || || | |||||||| |||||||||||    
T  5855 agccacctaagttctcctgaaaggtatttaaaatctccattaagctgaaccccggaaagttgaagcaatctgagtttattcatcttcttaaatgctttgg 5756  T
Q  546 t 546  Q
    |    
T  5755 t 5755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University