View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_172 (Length: 221)
Name: NF17277_low_172
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_172 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 29593894 - 29593690
Alignment:
| Q |
1 |
ggtgcaggagcaggggcgttagagaagccaagactgcacataaccacaaatcaaacgcttgtaagcgaaaatattggcacaaactctcgtaattattaac |
100 |
Q |
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| T |
29593894 |
ggtgcaggagcaggggcgttagagaagccaaggctgcacataaccacaaatcaaacgcttgtaagcgaaaatactggcacaaacactcgtaattattaac |
29593795 |
T |
|
| Q |
101 |
aaaatgaagcaatgagaaaaatgtttttaccttcctggaaatatacaagaaccgtgacctacaatcattcagaatatccttagtcagactatgatactag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29593794 |
aaaatgaagcaatgagaaaaatgtttttaccttcctggaaatatacaagaaccgtgacctacaatcattcagaatatccttagtcagactatgatactag |
29593695 |
T |
|
| Q |
201 |
aaatt |
205 |
Q |
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||||| |
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| T |
29593694 |
aaatt |
29593690 |
T |
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