View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_173 (Length: 220)
Name: NF17277_low_173
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_173 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 8456928 - 8457119
Alignment:
| Q |
14 |
cacagatacgattggtgggcaaatttagaaagcaaagttccggacatagctaaagctggaatcacttcagcatggttgccaccgccaactcattccttct |
113 |
Q |
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| T |
8456928 |
cacaaatacgattggtgggcaaatttagaaagcaaagttccggacatagctaaagctggaatcacttcagcatggttgccaccgccaactcattccttct |
8457027 |
T |
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| Q |
114 |
cgcctgaaggtaaaatcaactgcctttgaagtattaggcatacgattctagggtcttaaagtgcaataatttattgtctttcctctgttttg |
205 |
Q |
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| T |
8457028 |
cgcctgaaggttaaatcaactgcctttgaagtattaggcatacgattctagggtcttgaagtgcaataatttattgtctttcctctgttttg |
8457119 |
T |
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