View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_174 (Length: 218)
Name: NF17277_low_174
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_174 |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 23930268 - 23930457
Alignment:
| Q |
13 |
aaaggaggaaagtgaacatagagtgtgcaaagttcttagatggaaaa-taaggttttaacaatcttggttctcttgttgataaagaaaagatggatccaa |
111 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| || |||||||||||||| |
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| T |
23930268 |
aaaggaggaaagtgaacatagagtttgcaaagttcttagatggaaaaataaggttttgacaatcttggttctcttgttgatagaggaaagatggatccaa |
23930367 |
T |
|
| Q |
112 |
aaacattgtggttggttcatggtgctcgagctccattacttctaaatgttacacttaagctacttgcatagccttgttcatctttatgtt |
201 |
Q |
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| T |
23930368 |
aagcattgtggttggttcatggtgctcgagctccattacttcaaaaggttacacttaagctacttgcatagccttgttcatcttcatgtt |
23930457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 26625576 - 26625527
Alignment:
| Q |
99 |
aagatggatccaaaaacattgtggttggttcatggtgctcgagctccatt |
148 |
Q |
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| T |
26625576 |
aagatggatgcaaaaacatggtggttggttcatagtacttgagctccatt |
26625527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 15319601 - 15319773
Alignment:
| Q |
17 |
gaggaaagtgaacatagagtgtgcaaagttcttagatggaaaataaggttttaacaatcttggttctcttgttgataaagaaaagatggatccaaaaaca |
116 |
Q |
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| T |
15319601 |
gaggaaagtgaa--tagagtttgcaaacttctctgatggaagagaaggtttagacaatcttgattctcttgttgatagagatgggatggatccaaaaaca |
15319698 |
T |
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| Q |
117 |
ttgtggttggttcatggtgctcgagctccattacttctaaatgttacacttaagctacttgcatagccttgttcat |
192 |
Q |
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| T |
15319699 |
tggtggtttgttcttggtgcttgagctccattatttcaaaaggttgcacttaa-ctacttgcacaaccttgttcat |
15319773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 40697719 - 40697604
Alignment:
| Q |
13 |
aaaggaggaaagtgaacatagagtgtgcaaagttcttagatggaaaataaggttttaacaatcttggttctcttgttgataaagaaaagatggatccaaa |
112 |
Q |
| |
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||||||||||| |||| |||||| ||||| |||| ||| |||| | |||||||| ||||||||| | || |||| |||||||| |||||||||||||| |
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| T |
40697719 |
aaaggaggaaaatgaatgtagagtttgcaagcttctcagaaggaagagaaggttttgacaatcttgatcctattgtcgataaagataagatggatccaaa |
40697620 |
T |
|
| Q |
113 |
aacattgtggttggtt |
128 |
Q |
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||| | ||| |||||| |
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| T |
40697619 |
aacttggtgattggtt |
40697604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 65 - 201
Target Start/End: Complemental strand, 9648903 - 9648766
Alignment:
| Q |
65 |
ttttaacaatcttggttctcttgttgata-aagaaaagatggatccaaaaacattgtggttggttcatggtgctcgagctccattacttctaaatgttac |
163 |
Q |
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|||| ||||||||||| || |||||||| |||| ||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||| ||| | |
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| T |
9648903 |
ttttgacaatcttggtcctattgttgatgtaagataagatggatccaaaaacatagtggttggttcatggtgttcgagctcgattacttcaaaaggttgc |
9648804 |
T |
|
| Q |
164 |
acttaagctacttgcatagccttgttcatctttatgtt |
201 |
Q |
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| T |
9648803 |
acataagctacttgcacggttttgttcatcttcatgtt |
9648766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 89 - 201
Target Start/End: Original strand, 9650481 - 9650593
Alignment:
| Q |
89 |
tgataaagaaaagatggatccaaaaacattgtggttggttcatggtgctcgagctccattacttctaaatgttacacttaagctacttgcatagccttgt |
188 |
Q |
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||||| ||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||| ||| |||||||| |||||||| | |||||| |
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| T |
9650481 |
tgatagagataagatggatccaaaaacatggtgattggttcatggtgctcgagctccattacttcaaaaggttgcacttaagttacttgcacaaccttgt |
9650580 |
T |
|
| Q |
189 |
tcatctttatgtt |
201 |
Q |
| |
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| |||| ||||| |
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| T |
9650581 |
acgtcttcatgtt |
9650593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 35964343 - 35964158
Alignment:
| Q |
13 |
aaaggaggaaagtgaacatagagtgtgcaaagttcttagatggaaaataaggttttaacaatcttggttctcttgttgataaagaaaagatggatccaaa |
112 |
Q |
| |
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|||| ||||||||||||| |||| |||||| |||| |||||||| | |||||||| ||||| ||| |||||| ||||||||||| | ||||||||||| |
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| T |
35964343 |
aaagaaggaaagtgaaca--gagtttgcaaacttctcagatggaagagaaggttttgacaat-ttgattctctagttgataaagatgatatggatccaaa |
35964247 |
T |
|
| Q |
113 |
aacattgtggttggttcatggtgctcgagctccattacttctaaatgttacacttaagctacttgcatagccttgttcatctttatgtt |
201 |
Q |
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| || ||| ||||||||||||||||||| || |||||||| ||| | | ||| ||||||||||| | | |||||| |||||| ||||| |
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| T |
35964246 |
agtatggtgattggttcatggtgctcgaggtctattacttcaaaaggatgcacctaagctacttgaacaaccttgtccatcttcatgtt |
35964158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 83 - 201
Target Start/End: Original strand, 35964563 - 35964681
Alignment:
| Q |
83 |
tcttgttgataaagaaaagatggatccaaaaacattgtggttggttcatggtgctcgagctccattacttctaaatgttacacttaagctacttgcatag |
182 |
Q |
| |
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||||| ||||| ||| |||||||||||| || ||| ||||||||||||||||||||||| ||||||| || ||| ||| |||||||||||||||| | |
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| T |
35964563 |
tcttgatgatagagataagatggatccataagcatggtggttggttcatggtgctcgagttccattagttgaaaaggttgcacttaagctacttgcgcaa |
35964662 |
T |
|
| Q |
183 |
ccttgttcatctttatgtt |
201 |
Q |
| |
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||||||| ||||| ||||| |
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| T |
35964663 |
ccttgtttatcttcatgtt |
35964681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 191
Target Start/End: Original strand, 33095255 - 33095395
Alignment:
| Q |
52 |
atggaaaataaggttttaacaatcttgg-ttctcttgttgataaagaaaagatggatccaaaaacattgtggttggttcatggtgctcgagctccattac |
150 |
Q |
| |
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|||||||| |||||||| |||| |||| |||| || |||||| ||| ||||||||||||| ||||| | ||| || ||||||||||| |||||||| || |
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| T |
33095255 |
atggaaaagaaggttttgacaaacttgcattctgttattgatagagacaagatggatccaagaacatggcggtcggctcatggtgctcaagctccatgac |
33095354 |
T |
|
| Q |
151 |
ttctaaatgttacacttaagctacttgcatagccttgttca |
191 |
Q |
| |
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||| ||| ||| || |||||||||| || | ||||||||| |
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|
| T |
33095355 |
ttcaaaaggttgcatataagctacttacacaaccttgttca |
33095395 |
T |
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