View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17277_low_179 (Length: 214)

Name: NF17277_low_179
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17277_low_179
NF17277_low_179
[»] chr3 (1 HSPs)
chr3 (63-198)||(1154060-1154195)
[»] chr1 (3 HSPs)
chr1 (16-189)||(10415370-10415548)
chr1 (16-108)||(10409759-10409851)
chr1 (16-108)||(10420343-10420435)
[»] chr5 (6 HSPs)
chr5 (16-110)||(35386341-35386435)
chr5 (16-109)||(35411002-35411095)
chr5 (35-108)||(35376760-35376833)
chr5 (35-108)||(35424019-35424092)
chr5 (16-108)||(35755143-35755235)
chr5 (16-108)||(35367189-35367281)
[»] chr8 (2 HSPs)
chr8 (31-108)||(15294093-15294170)
chr8 (31-108)||(15474462-15474539)
[»] chr7 (1 HSPs)
chr7 (34-101)||(29622904-29622971)
[»] chr2 (3 HSPs)
chr2 (35-101)||(30626419-30626485)
chr2 (35-101)||(30663370-30663436)
chr2 (35-101)||(30672050-30672116)


Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 63 - 198
Target Start/End: Original strand, 1154060 - 1154195
Alignment:
Q  63 tacaattaaaggaacaataggatatattcctcctggtaaagttcttaaatccattaatagttactatctttcagaaatttagcattgctaatttattatt 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1154060 tacaattaaaggaacaataggatatattcctcctggtaaagttcttaaatccattaatagttactatctttcagaaatttggcattgctaatttattatt 1154159  T
Q  163 atttaaattagttatgaccatcaatgtgatatatat 198  Q
    ||||||||||||||||||||||||||||||||||||    
T  1154160 atttaaattagttatgaccatcaatgtgatatatat 1154195  T

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Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 10415548 - 10415370
Alignment:
Q  16 attcttggagccaccgagcattcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaaagttcttaa----- 110  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||| ||||||||| ||||||         
T  10415548 attcttggagccacagagcattcaagtaaagatcaagtcatttcctctactattaaaggaactataggatatattcctactggtaaagctcttaacttat 10415449  T
Q  111 atccattaatagttactatctttcagaaatttagcattgctaatttattattatttaaattagttatgaccatcaatgt 189  Q
    |||||||  | |||| || | || |||||||||||| |||||||||||| ||||||| || || ||||||| |||||||    
T  10415448 atccatttttggttagtacccttaagaaatttagcaatgctaatttattgttatttatatcagatatgaccctcaatgt 10415370  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 10409851 - 10409759
Alignment:
Q  16 attcttggagccaccgagcattcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaaagttctt 108  Q
    |||| |||||| || || |||||||||||||||||||| ||||||||||||||||| ||||| ||||||||| ||||||| ||||||||||||    
T  10409851 attcgtggagctacagaacattcaagtaaagatcaagttatttcctctacaattaagggaactataggatatgttcctcccggtaaagttctt 10409759  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 10420435 - 10420343
Alignment:
Q  16 attcttggagccaccgagcattcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaaagttctt 108  Q
    ||||||||| |||  || |||||||||||||||||||| | ||| || ||||| || ||||  ||||||||| ||||||||||||||||||||    
T  10420435 attcttggaaccagagaccattcaagtaaagatcaagttaattcttccacaatcaagggaagtataggatatgttcctcctggtaaagttctt 10420343  T

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Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 35386341 - 35386435
Alignment:
Q  16 attcttggagccaccgagcattcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaaagttcttaa 110  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  35386341 attcttggaaccacagagcattcaagtaaagatcaagttatttcctctactattaaaggaactataggatatattcctcctggtaaagttcttaa 35386435  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 35411002 - 35411095
Alignment:
Q  16 attcttggagccaccgagcattcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaaagttctta 109  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||  ||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  35411002 attcttggaaccacagagcattcaagtaaagatcaagttattttttctacaattaaaggaactataggatatattcctcctggtaaagctctta 35411095  T

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Target: chr5; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 35376760 - 35376833
Alignment:
Q  35 attcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaaagttctt 108  Q
    ||||||||||| ||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  35376760 attcaagtaaaaatcaagttatttcctccacaattaaaggaactataggatatattcctcctggtaaagttctt 35376833  T

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Target: chr5; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 35424019 - 35424092
Alignment:
Q  35 attcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaaagttctt 108  Q
    ||||||||||| ||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  35424019 attcaagtaaaaatcaagttatttcctccacaattaaaggaactataggatatattcctcctggtaaagttctt 35424092  T

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Target: chr5; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 35755143 - 35755235
Alignment:
Q  16 attcttggagccaccgagcattcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaaagttctt 108  Q
    |||| |||||| || || |||||||||||||||||||| | ||||||||||||||| ||||| ||||||||| ||||||||||||||||||||    
T  35755143 attcatggagctacagaacattcaagtaaagatcaagttaattcctctacaattaagggaactataggatatgttcctcctggtaaagttctt 35755235  T

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Target: chr5; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 35367189 - 35367281
Alignment:
Q  16 attcttggagccaccgagcattcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaaagttctt 108  Q
    ||||||||| |||  || |||||||||||||||||||| | ||| || |||||||| ||||| ||||||||| ||||||||||||||||||||    
T  35367189 attcttggaaccagagaccattcaagtaaagatcaagttaattcttccacaattaagggaactataggatatgttcctcctggtaaagttctt 35367281  T

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Target: chr8 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 15294093 - 15294170
Alignment:
Q  31 gagcattcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaaagttctt 108  Q
    |||||||||||||||||| |||| ||| ||||||  ||||||||||| ||||||||||||||||||||||||||||||    
T  15294093 gagcattcaagtaaagataaagttattgcctctaagattaaaggaactataggatatattcctcctggtaaagttctt 15294170  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 15474462 - 15474539
Alignment:
Q  31 gagcattcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaaagttctt 108  Q
    |||||||||||||||||| |||| ||| ||||||  ||||||||||| ||||||||||||||||||||||||||||||    
T  15474462 gagcattcaagtaaagataaagttattgcctctaagattaaaggaactataggatatattcctcctggtaaagttctt 15474539  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 29622971 - 29622904
Alignment:
Q  34 cattcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaa 101  Q
    ||||||||||| |||||| | | ||| || |||||||| ||||| ||||||||| |||||||||||||    
T  29622971 cattcaagtaatgatcaaattacttcttccacaattaagggaactataggatatgttcctcctggtaa 29622904  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 101
Target Start/End: Original strand, 30626419 - 30626485
Alignment:
Q  35 attcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaa 101  Q
    ||||||||  ||||||||| | ||| || |||||||| ||||| ||||||||| |||||||||||||    
T  30626419 attcaagtgtagatcaagttaattcgtccacaattaagggaactataggatatgttcctcctggtaa 30626485  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 101
Target Start/End: Original strand, 30663370 - 30663436
Alignment:
Q  35 attcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaa 101  Q
    ||||||||  ||||||||| | ||| || |||||||| ||||| ||||||||| |||||||||||||    
T  30663370 attcaagtgtagatcaagttaattcgtccacaattaagggaactataggatatgttcctcctggtaa 30663436  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 101
Target Start/End: Original strand, 30672050 - 30672116
Alignment:
Q  35 attcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaa 101  Q
    ||||||||  ||||||||| | ||| || |||||||| ||||| ||||||||| |||||||||||||    
T  30672050 attcaagtgtagatcaagttaattcgtccacaattaagggaactataggatatgttcctcctggtaa 30672116  T

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