View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_18 (Length: 538)
Name: NF17277_low_18
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 17 - 526
Target Start/End: Original strand, 3106634 - 3107143
Alignment:
| Q |
17 |
attaagtaatcagtaaataagtgaataagttatctctgatgacttttattttattttgcattaaacaatagtagtacttgtactactactactactctgc |
116 |
Q |
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| T |
3106634 |
attaagtaaacagtaaataagtgaataagttatctctgatgacttttattttattttgcattaaacaatagtagtacttgtactactactactactctgc |
3106733 |
T |
|
| Q |
117 |
ttgaaccgatgaactgcttttgttttagttgaatggatggaggggtcaataatctgtgtaacagtcagtcctttggcctaatatgtcgctgaaatgaaga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3106734 |
ttgaaccgatgaactgcttttgttttagttgaatggatggaggggtcaataatctgtgtaacagtcagtcctttggcctaatatgtcgctgaaatgaaga |
3106833 |
T |
|
| Q |
217 |
aacaaaaacgtgaatatcaatgcaaaatgagaaaagggacaaagttggttgcttctttcttggggaactccaagctcgatgcccatatatatttaccaat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3106834 |
aacaaaaacgtgaatatcaatgcaaaatgagaaaagtgacaaagttggttgcttctttcttggggaactccaagctcgatgcccatatatatttaccaat |
3106933 |
T |
|
| Q |
317 |
ctgctctgctcgtgagataggtttaactttatttgcatcacaagtcacacgcttaaccatatgtgtcttagtgctttgtgccataaatttccatgtgacc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3106934 |
ctgctctgctcgtgagataggtttaactttatttgcatcacaagtcacacgcttaaccatatgtgtcttagtgctttgtgccataaatttccatgtgacc |
3107033 |
T |
|
| Q |
417 |
ctgtctacgtctctctgtgggttgacgtagtaactctataccgagcacctaaacaatattccccaacgaccatcaatcaatctacattattaagctagcc |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3107034 |
ctgtctacgtctctctgtgggttgacgtagtaactctataccgagcacctaaacaatattccccaacgaccatcaatcaatctacattattaagctagcc |
3107133 |
T |
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| Q |
517 |
attgaaagta |
526 |
Q |
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| T |
3107134 |
attgaaagta |
3107143 |
T |
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