View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17277_low_188 (Length: 203)

Name: NF17277_low_188
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17277_low_188
NF17277_low_188
[»] chr6 (15 HSPs)
chr6 (9-203)||(5429520-5429714)
chr6 (9-197)||(5422130-5422318)
chr6 (9-189)||(5366441-5366621)
chr6 (37-188)||(5070434-5070585)
chr6 (100-160)||(5394308-5394368)
chr6 (141-203)||(5149823-5149885)
chr6 (20-194)||(5380297-5380470)
chr6 (13-160)||(5444068-5444215)
chr6 (31-203)||(5092859-5093028)
chr6 (9-160)||(5184845-5184996)
chr6 (31-188)||(5160509-5160666)
chr6 (32-188)||(5358146-5358302)
chr6 (29-68)||(5105505-5105544)
chr6 (39-198)||(5174069-5174228)
chr6 (141-203)||(5340475-5340537)
[»] scaffold0864 (1 HSPs)
scaffold0864 (100-160)||(4381-4441)


Alignment Details
Target: chr6 (Bit Score: 139; Significance: 6e-73; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 9 - 203
Target Start/End: Complemental strand, 5429714 - 5429520
Alignment:
Q  9 aacaacttgacctatggttttgtgacactccattatcttcaccaactcttcaagacaccaacgagaatccgcgtaatttgatgaaaatacgattatagaa 108  Q
    ||||| ||||||||| ||| | |||||||||||||||||||||||||| ||||||||||| || || ||||||||||||| |||||| | ||| | ||||    
T  5429714 aacaatttgacctatagttctctgacactccattatcttcaccaactcctcaagacaccatcgcgattccgcgtaatttgttgaaaaaatgataacagaa 5429615  T
Q  109 attcgagactgttcaattgcgtgtgataatgctgttgaaatgtgatctcctcctttaagagaaacatcatccctaaaaacagtaattccagcatt 203  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5429614 attcgagactgttcaattgcgtgtgataatgttgttgaaatgtgatctcctcctttaagagaaacatcatccctaaaaacagtaattccagcatt 5429520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 9 - 197
Target Start/End: Complemental strand, 5422318 - 5422130
Alignment:
Q  9 aacaacttgacctatggttttgtgacactccattatcttcaccaactcttcaagacaccaacgagaatccgcgtaatttgatgaaaatacgattatagaa 108  Q
    ||||| ||| || |||||| |||||||||||||||| |||| |||||| |||||||||||  | |||||||||||||||| ||| || || || |||||     
T  5422318 aacaatttgtccaatggttctgtgacactccattattttcaacaactcatcaagacaccattgtgaatccgcgtaatttgttgagaaaactatgatagac 5422219  T
Q  109 attcgagactgttcaattgcgtgtgataatgctgttgaaatgtgatctcctcctttaagagaaacatcatccctaaaaacagtaattcc 197  Q
    ||||||||||||||||||||  ||   | || |||||||||||||||||||| || ||| ||| |||| ||||| |||||  |||||||    
T  5422218 attcgagactgttcaattgctcgtaggagtgatgttgaaatgtgatctcctctttgaagcgaatcatcgtccctgaaaactttaattcc 5422130  T

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Target: chr6; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 9 - 189
Target Start/End: Complemental strand, 5366621 - 5366441
Alignment:
Q  9 aacaacttgacctatggttttgtgacactccattatcttcaccaactcttcaagacaccaacgagaatccgcgtaatttgatgaaaatacgattatagaa 108  Q
    ||||| ||| || |||||||| ||||||||||||||| ||| |||||| ||||||||||| || || |  |||||||||  |||||| ||||| ||||||    
T  5366621 aacaatttgtccaatggttttctgacactccattatcctcaacaactcatcaagacaccatcgcgattgggcgtaattttttgaaaaaacgatgatagaa 5366522  T
Q  109 attcgagactgttcaattgcgtgtgataatgctgttgaaatgtgatctcctcctttaagagaaacatcatccctaaaaaca 189  Q
    ||||||| ||||||||||||  |  | | || |||||||||||||||||||| || ||| ||| | || ||||| ||||||    
T  5366521 attcgagtctgttcaattgctcgcaagagtgatgttgaaatgtgatctcctctttgaagcgaatcgtcgtccctgaaaaca 5366441  T

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Target: chr6; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 37 - 188
Target Start/End: Original strand, 5070434 - 5070585
Alignment:
Q  37 tccattatcttcaccaactcttcaagacaccaacgagaatccgcgtaatttgatgaaaatacgattatagaaattcgagactgttcaattgcgtgtgata 136  Q
    |||||||||||||||||||| ||||||||||| || || ||||| |||||||  || || | ||| ||||| ||||||||||||||||||||  ||   |    
T  5070434 tccattatcttcaccaactcatcaagacaccatcgtgattccgcataatttgtcgagaaaatgatgatagacattcgagactgttcaattgctcgtagga 5070533  T
Q  137 atgctgttgaaatgtgatctcctcctttaagagaaacatcatccctaaaaac 188  Q
     || |||||||||||||||||||| || ||||||| | || |||||||||||    
T  5070534 gtgatgttgaaatgtgatctcctctttgaagagaatcgtcttccctaaaaac 5070585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 5394368 - 5394308
Alignment:
Q  100 attatagaaattcgagactgttcaattgcgtgtgataatgctgttgaaatgtgatctcctc 160  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||    
T  5394368 attatagaaattcgagactgttcaattgcgtgtgataatgatgttgaaatgcaatctcctc 5394308  T

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Target: chr6; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 5149823 - 5149885
Alignment:
Q  141 tgttgaaatgtgatctcctcctttaagagaaacatcatccctaaaaacagtaattccagcatt 203  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||  |||||||||||||    
T  5149823 tgttgaaatgtgatctcctcttttaagagaatcatcatccctaaaaactttaattccagcatt 5149885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 5380470 - 5380297
Alignment:
Q  20 ctatggttttgtgacactccattatcttcaccaactcttcaagacaccaacgagaatccgcgtaatttgatgaaaatacgattatagaaattcgagactg 119  Q
    |||||||| |||||||||| ||||||||||||||||| ||||||||||| || ||||| || ||||||  |||||| || || |||||||||  ||| ||    
T  5380470 ctatggttctgtgacactc-attatcttcaccaactcatcaagacaccatcgtgaatctgcataatttcttgaaaaaacaataatagaaattttagaatg 5380372  T
Q  120 ttcaattgcgtgtgataatgctgttgaaatgtgatctcctcctttaagagaaacatcatccctaaaaacagtaat 194  Q
    ||||||| | || | |||   ||||||||| |||||||||| || ||| ||| | |||||| | ||||| |||||    
T  5380371 ttcaatttcttgcggtaacaatgttgaaatatgatctcctctttgaagtgaatcttcatccatgaaaactgtaat 5380297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 160
Target Start/End: Complemental strand, 5444215 - 5444068
Alignment:
Q  13 acttgacctatggttttgtgacactccattatcttcaccaactc-ttcaagacaccaacgagaatccgcgtaatttgatgaaaatacgattatagaaatt 111  Q
    ||||| |||||| ||||  |||| | |||||| |||||||| || ||||| |||||| || ||||| || ||||||  |||||| || ||||||||||||    
T  5444215 acttgtcctatgtttttacgacaattcattattttcaccaattcattcaa-acaccatcgcgaatcagcataattttttgaaaaaacaattatagaaatt 5444117  T
Q  112 cgagactgttcaattgcgtgtgataatgctgttgaaatgtgatctcctc 160  Q
     |||| |||||||||||  ||||||||| || ||||||||||| |||||    
T  5444116 tgagattgttcaattgctcgtgataatgatgatgaaatgtgatatcctc 5444068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 203
Target Start/End: Complemental strand, 5093028 - 5092859
Alignment:
Q  31 tgacactccattatcttcaccaactcttcaagacaccaacgagaatccgcgtaatttgatgaaaatacgattatagaaattcgagactgttcaattgcgt 130  Q
    ||||||||||||||||| || ||||| || |||||||| || ||||| || ||||||  |||||| || || | |||||||||||||| ||||||    |    
T  5093028 tgacactccattatctttactaactcatctagacaccatcgcgaatctgcataatttcttgaaaaaacaatcacagaaattcgagactcttcaatcaatt 5092929  T
Q  131 gtgataatgctgttgaaatgtgatctcctcctttaagagaaacatcatccctaaaaacagtaattccagcatt 203  Q
    |   |||   || ||| || |||||||||| || ||| ||| ||||||||||||||||| |||||||||||||    
T  5092928 gaagtaa---tgatgatatttgatctcctctttgaagcgaatcatcatccctaaaaacattaattccagcatt 5092859  T

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Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 160
Target Start/End: Original strand, 5184845 - 5184996
Alignment:
Q  9 aacaacttgacctatggttttgtgacactccattatcttcaccaactcttcaagacaccaacgagaatccgcgtaatttgatgaaaatacgattatagaa 108  Q
    ||||||||| ||||||||| || |||||| |||||||||  |||| || || | |||||| |  ||||  || ||||||   ||||| || |||||||||    
T  5184845 aacaacttgtcctatggttctgcgacacttcattatcttttccaattcatccaaacaccatctcgaattggcataatttttggaaaaaacaattatagaa 5184944  T
Q  109 attcgagactgttcaattgcgtgtgataatgctgttgaaatgtgatctcctc 160  Q
    | | ||||||||||||||| | ||||||||| |||||| || | ||||||||    
T  5184945 acttgagactgttcaattgagcgtgataatgatgttgatatataatctcctc 5184996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 188
Target Start/End: Original strand, 5160509 - 5160666
Alignment:
Q  31 tgacactccattatcttcaccaactcttcaagacaccaacgagaatccgcgtaatttgatgaaaatacgattatagaaattcgagactgttcaattgcgt 130  Q
    ||||||||||||| ||| || ||||| |  |||||||| || |||||||| ||||||  |||||| || || | |||||||||||| | |||||| |  |    
T  5160509 tgacactccattacctttactaactcatttagacaccatcgcgaatccgcataatttcttgaaaaaacaatcacagaaattcgagattcttcaatcgaat 5160608  T
Q  131 gtgataatgctgttgaaatgtgatctcctcctttaagagaaacatcatccctaaaaac 188  Q
    |   ||||| |||||  || |||||||||| || ||||||| |||| |||||||||||    
T  5160609 gaagtaatgatgttggtatttgatctcctctttcaagagaatcatcgtccctaaaaac 5160666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 188
Target Start/End: Original strand, 5358146 - 5358302
Alignment:
Q  32 gacactccattatcttcaccaactcttcaagacaccaacgagaatccgcgtaatttgatgaaaatacgattatagaaattcgagactgttcaattgcgtg 131  Q
    |||||| |||||||| |||||||||||||||||||||  | || || || ||||||| ||| || ||||| | ||||||| |||| | || |||||| ||    
T  5358146 gacacttcattatctccaccaactcttcaagacaccattgcgattctgcataatttgttgagaaaacgataacagaaatttgagaatcttgaattgcttg 5358245  T
Q  132 tgataatgctgttgaaatgtgatctcctcctttaagagaaacatcatccctaaaaac 188  Q
       || || | |||||||||||||||| | || ||| |||  ||||||| |||||||    
T  5358246 cattagtgattttgaaatgtgatctcccctttgaagtgaatgatcatccttaaaaac 5358302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 5105505 - 5105544
Alignment:
Q  29 tgtgacactccattatcttcaccaactcttcaagacacca 68  Q
    |||| |||||| ||||||||||||||||||||||||||||    
T  5105505 tgtggcactccgttatcttcaccaactcttcaagacacca 5105544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 198
Target Start/End: Complemental strand, 5174228 - 5174069
Alignment:
Q  39 cattatcttcaccaactcttcaagacaccaacgagaatccgcgtaatttgatgaaaatacgattatagaaattcgagactgttcaattgcgtgtgataat 138  Q
    |||||| ||||||||||| || | |||||| || ||||| || || |||  ||| || | ||| | ||||||| |||||| ||||||||| |||  || |    
T  5174228 cattattttcaccaactcatccaaacaccaccgtgaatctgcatagttttttgagaaaatgataacagaaatttgagactcttcaattgcttgtagtagt 5174129  T
Q  139 gctgttgaaatgtgatctcctcctttaagagaaacatcatccctaaaaacagtaattcca 198  Q
    | | |||||||||||||||||| || ||| ||| |||| ||| |||||||  ||||||||    
T  5174128 gattttgaaatgtgatctcctctttgaagtgaatcatcgtccttaaaaacgctaattcca 5174069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 5340537 - 5340475
Alignment:
Q  141 tgttgaaatgtgatctcctcctttaagagaaacatcatccctaaaaacagtaattccagcatt 203  Q
    ||||||||| ||||| |||| || ||| ||| |||| || |||||||||||||||||||||||    
T  5340537 tgttgaaatttgatcacctctttgaagcgaatcatcgtctctaaaaacagtaattccagcatt 5340475  T

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Target: scaffold0864 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0864
Description:

Target: scaffold0864; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 4441 - 4381
Alignment:
Q  100 attatagaaattcgagactgttcaattgcgtgtgataatgctgttgaaatgtgatctcctc 160  Q
    |||| ||||||| |||||| |||||||||  || |||||| ||||||||||| ||||||||    
T  4441 attaaagaaatttgagactcttcaattgcacgtaataatgatgttgaaatgtaatctcctc 4381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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