View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_19 (Length: 533)
Name: NF17277_low_19
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 184 - 407
Target Start/End: Complemental strand, 36932584 - 36932361
Alignment:
| Q |
184 |
gacattgtatgagaaaataagttcaaacatgaaagatcaggagattaactgttccatggctttgagccaaacgggctcggccttggccaaacccttcacg |
283 |
Q |
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| T |
36932584 |
gacattgtaagagaaaataagttcaaacatgaaagatcaggagattaactgttccatggctttgagccaaacgggctcggccttggccaaacccttgacg |
36932485 |
T |
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| Q |
284 |
agctttctggaccgagaaagcaaatctcctttcataaacgacattgttcccacttctttgattttcgttctctgttgctagttgcttcaatgcgtctctt |
383 |
Q |
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| T |
36932484 |
agctttctggaccgagaaagcaaatctcctttcataaacgacattgttcccacttctttgattttcgttctctgttgctagttgcttcaatgcgcctctt |
36932385 |
T |
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| Q |
384 |
gctgttgcaggcaacaaaacaaaa |
407 |
Q |
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| T |
36932384 |
gctgttgcaggcaacaaaacaaaa |
36932361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 36932661 - 36932598
Alignment:
| Q |
87 |
accattgtgcagcaaaaagagtcatcaacgataaaaatctagataggagattctcaagtggcac |
150 |
Q |
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| T |
36932661 |
accattgtgcaacaaaaagagtcatcaaagataaaaatctagataggagattctcaagtggcac |
36932598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 452 - 496
Target Start/End: Complemental strand, 36932357 - 36932313
Alignment:
| Q |
452 |
cagtttcaatttcagttaaaaatcaaataacacagtttcagtttc |
496 |
Q |
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| T |
36932357 |
cagtttcaatttcagttaaaaatcaaataacacagtttcaatttc |
36932313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 8e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 229 - 340
Target Start/End: Complemental strand, 990422 - 990311
Alignment:
| Q |
229 |
taactgttccatggctttgagccaaacgggctcggccttggccaaacccttcacgagctttctggaccgagaaagcaaatctcctttcataaacgacatt |
328 |
Q |
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||||||||||||||||||||||||||| || |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
990422 |
taactgttccatggctttgagccaaacaggttcggccatggccaaacccttgacgagctttctggaccgagaaagcaaatctcctttcataaacgacatt |
990323 |
T |
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| Q |
329 |
gttcccacttct |
340 |
Q |
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| T |
990322 |
gttcccacttct |
990311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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