View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17277_low_30 (Length: 465)
Name: NF17277_low_30
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_30 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 195 - 290
Target Start/End: Complemental strand, 32193015 - 32192920
Alignment:
| Q |
195 |
aaactgagtaatggacaatgttttgatgtggataattaaataaaataatgttaatgagaaatggtgattgcatcatcttttgtattcaaatattat |
290 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32193015 |
aaactgagtaatggagaatgttttgatgtggaaaattaaataaaataattttaatgagaaatggtgattgcatcatcttttgtattcaaatattat |
32192920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 32194658 - 32194608
Alignment:
| Q |
143 |
tgaaattgaaattgatagatgcctacacttagatcgagagagagctcatta |
193 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32194658 |
tgaaattgaagttgatagatgcctacacttagatcacgagagagctcatta |
32194608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 32195267 - 32195233
Alignment:
| Q |
37 |
ataataagaaagggtgattgcatcatctattatat |
71 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |
|
|
| T |
32195267 |
ataatatgaaagggtgattgcatcatctattatat |
32195233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 21549233 - 21549190
Alignment:
| Q |
130 |
aaacaaacaacattgaaattgaaattgatagatgcctacacttag |
174 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
21549233 |
aaacaaacaacat-gaaattgaaattgatagatgcctacacttag |
21549190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 193
Target Start/End: Complemental strand, 20361464 - 20361389
Alignment:
| Q |
111 |
aagagattgtttataagtgaaacaaacaacattgaaattgaaattgatagatgcctacacttagatcgagagagagctcatta |
193 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| || | ||||||||||| |
|
|
| T |
20361464 |
aagagattgtttataggtgaaacaaacaacat-------gaaattgatagatgcctacacttagaccgctacagagctcatta |
20361389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University