View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_32 (Length: 458)
Name: NF17277_low_32
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 21 - 311
Target Start/End: Original strand, 6236624 - 6236914
Alignment:
| Q |
21 |
gaagcaataaagctgggtggtgagatcctccattgagaagagaaggtaggtaaactcttcgtatttttcaccatagcgtcagcagctgcattcccttccc |
120 |
Q |
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| T |
6236624 |
gaagcaataaagcagggtggtgagatcctccattgagaagagaaggtaggtaaactcttcgtatttttcgccatagcgtcagcagctgcattcccttccc |
6236723 |
T |
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| Q |
121 |
ggtgtatgtgagagcaaacacaactgagactttagatatttagataggtgaaaatctaatcaaaaattaaaatgtttgatgaatttagatannnnnnnna |
220 |
Q |
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| T |
6236724 |
ggtgtatgtgagagcaaacacaagtgagactttagatatttagataggtgaaaatctaatcaaaaattaaaatgtttgatgaatttagatatttttttta |
6236823 |
T |
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| Q |
221 |
aacatataaacttgtgttctgaattaaagaaagtgattatcatctcaactaagttggcagtacaacaacacaaaatcgaacgaccaaaaat |
311 |
Q |
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| T |
6236824 |
aacatataaacttgtgttctgaattaaagaaagtgattatcatctcaactaagttggcagtacaacaacacaaaaccgaacgaccaaaaat |
6236914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 379 - 441
Target Start/End: Original strand, 6236982 - 6237044
Alignment:
| Q |
379 |
gcaatagtgcaaatatctagtgggggtaattgttgggattgtgaggtgattggtagtgttttt |
441 |
Q |
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| T |
6236982 |
gcaatagtccaaatatctagtgggggtaattgttgggattgtgaggtgattggtagtgttttt |
6237044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 400 - 440
Target Start/End: Complemental strand, 33891595 - 33891555
Alignment:
| Q |
400 |
gggggtaattgttgggattgtgaggtgattggtagtgtttt |
440 |
Q |
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| T |
33891595 |
gggggtaattgttgggattgtgaggtggttggtagtgtttt |
33891555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 289
Target Start/End: Complemental strand, 33891819 - 33891693
Alignment:
| Q |
167 |
ggtgaaaatctaatcaa---aaattaaaatgtttgatgaatttagat-annnnnnnnaaacatataaacttgtgttctgaattaaagaaagtgattatca |
262 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||||| | || ||||||| |||||||||||| ||||||||||||| ||| |
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| T |
33891819 |
ggtgaaaatctaatcgattgaaattaaaatgtttgatgaatttagattattattttttaatatataaatttgtgttctgaaacaaagaaagtgattgtca |
33891720 |
T |
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| Q |
263 |
tctcaactaagttggcagtacaacaac |
289 |
Q |
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|||||| ||| |||||| |||||||| |
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| T |
33891719 |
tctcaattaaattggcaacacaacaac |
33891693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 289
Target Start/End: Original strand, 33952429 - 33952555
Alignment:
| Q |
167 |
ggtgaaaatctaatcaa---aaattaaaatgtttgatgaatttagat-annnnnnnnaaacatataaacttgtgttctgaattaaagaaagtgattatca |
262 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||||| | || ||||||| |||||||||||| ||||||||||||| ||| |
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| T |
33952429 |
ggtgaaaatctaatcgattgaaattaaaatgtttgatgaatttagattattattttttaatatataaatttgtgttctgaaacaaagaaagtgattgtca |
33952528 |
T |
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| Q |
263 |
tctcaactaagttggcagtacaacaac |
289 |
Q |
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| T |
33952529 |
tctcaattaaattggcaacacaacaac |
33952555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 400 - 440
Target Start/End: Original strand, 33952653 - 33952693
Alignment:
| Q |
400 |
gggggtaattgttgggattgtgaggtgattggtagtgtttt |
440 |
Q |
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| T |
33952653 |
gggggtaattgttgggattgtgaggtggttggtagtgtttt |
33952693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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