View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_35 (Length: 449)
Name: NF17277_low_35
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 18 - 440
Target Start/End: Complemental strand, 43666091 - 43665673
Alignment:
| Q |
18 |
gatttcatgttcgttgcattgacaaatggctaagttcgcattcgtcttgtccgaaatgtagacagtgccttattgaaacttgtaacaaaattgttgggtc |
117 |
Q |
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| T |
43666091 |
gatttcatgttcgttgcattgacaaatggctaagttcgcattcgtcttgtccgaaatgtagacagtgccttattgaaacttgtaacaaaattgttgggtc |
43665992 |
T |
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| Q |
118 |
acaaggtagttcatcccaaccacaacctatgttgtttccggtgcccgaaacaattgtaactatagcaccactggaacctgaaggtttggtgcgtaattat |
217 |
Q |
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| T |
43665991 |
acaaggtagttcatcccaaccacaacctatgttgtttccggtgcccgaaacaattgtaactatagcaccactggaacctgaaggtttggtgcgtaattat |
43665892 |
T |
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| Q |
218 |
agggaggttagctaattaatttaatcagcactgctttcttctttgaagctgaaattagcactttcctttagagtttgtagaatgtcttttaagtagttct |
317 |
Q |
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| T |
43665891 |
agggaggttagct----aatttaatcagcactgctttcttctttgaagctgaaattagcactttactttagagtttgtagaatgtcttttaagtagttct |
43665796 |
T |
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| Q |
318 |
agtttagactgagtcatcttccagatcaaccataatcaatgtagtggttactggtcatgaatgattggatgtgtatagtgttcaaacttttcagaatttg |
417 |
Q |
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| T |
43665795 |
agtttagactgagtcatcttccagatcaaccataatcaatgtagtggttactggtcatgaatgattggatgtgtatagtgttcaaacttttcagaatttg |
43665696 |
T |
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| Q |
418 |
ttttagttttaccttttctctgc |
440 |
Q |
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| T |
43665695 |
ttttagttttaccttttctctgc |
43665673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 38840878 - 38840846
Alignment:
| Q |
18 |
gatttcatgttcgttgcattgacaaatggctaa |
50 |
Q |
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| T |
38840878 |
gatttcatgttcgttgcattgacaaatggctaa |
38840846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 38851026 - 38851058
Alignment:
| Q |
18 |
gatttcatgttcgttgcattgacaaatggctaa |
50 |
Q |
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| T |
38851026 |
gatttcatgttcgttgcattgacaaatggctaa |
38851058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 38858616 - 38858584
Alignment:
| Q |
18 |
gatttcatgttcgttgcattgacaaatggctaa |
50 |
Q |
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| T |
38858616 |
gatttcatgttcgttgcattgacaaatggctaa |
38858584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 38861490 - 38861458
Alignment:
| Q |
18 |
gatttcatgttcgttgcattgacaaatggctaa |
50 |
Q |
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| T |
38861490 |
gatttcatgttcgttgcattgacaaatggctaa |
38861458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 38864945 - 38864913
Alignment:
| Q |
18 |
gatttcatgttcgttgcattgacaaatggctaa |
50 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
38864945 |
gatttcacgttcgttgcattgacaaatggctaa |
38864913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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