View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_36 (Length: 444)
Name: NF17277_low_36
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 19 - 435
Target Start/End: Original strand, 39535169 - 39535583
Alignment:
| Q |
19 |
atttagtcataattaatcctcgttagagaatctataaggaacactaggtgaaatcttcccttttatccgaattttcattgaagtcaaagatcgaatccta |
118 |
Q |
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| T |
39535169 |
atttagtcataattaatcctcgttagagaatctataaggaacactaggtgaaatcttcccttttatccgaattttcattgaagtcaaggatcaaatccta |
39535268 |
T |
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| Q |
119 |
attattgcttaaggaacctaaattccttaccaattaaatcaatatattaattgttgcgattatatattgtaaaatcttatttagatggtaaatgatcatt |
218 |
Q |
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| T |
39535269 |
attattgcttaaggaacctaaatcccttaccacttaaatcaatatattaattgttgcgattatatattgtaaaatcttatttagatggtaaatgatcatt |
39535368 |
T |
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| Q |
219 |
agacaattttaaagaactccaatgtagtgagatattgaacaaaagtaacatatggcaaatgcaacgagttcaatatctcacaacattatgggaatctagt |
318 |
Q |
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| T |
39535369 |
agacaattttaaagaactccaatgtagtgagatattgaacaaaagtaacatatggcaaatgcaacgagt------tctcactacattatgggaatctagt |
39535462 |
T |
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| Q |
319 |
ttgtcattatcagtttcaaaaatctcactccaatctagtttgttcaata----gaactattcttcctcgcttcttccaaagatttcctaacctcacttcc |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
39535463 |
ttgtcattatcagtttcaaaaatctcactccaatctagtttgttcaatagaacgaactattcttcctcgcttcttccaaagatttcttaacctcacttcc |
39535562 |
T |
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| Q |
415 |
ctccacgtcactggcctatgc |
435 |
Q |
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| T |
39535563 |
ctccacgtcactggcctatgc |
39535583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 363 - 435
Target Start/End: Complemental strand, 39519897 - 39519825
Alignment:
| Q |
363 |
caatagaactattcttcctcgcttcttccaaagatttcctaacctcacttccctccacgtcactggcctatgc |
435 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||| |
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| T |
39519897 |
caatcgaactattcttcctcgcttcttccaaagatttcctaacctcacttccctccatgttactggcttatgc |
39519825 |
T |
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