View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_41 (Length: 421)
Name: NF17277_low_41
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 12 - 409
Target Start/End: Complemental strand, 33157234 - 33156840
Alignment:
| Q |
12 |
ttatgacccactttctatcactgcgttggagcaattgtttgctcttccatctcaactaatctgtcaaattttaagtggaaatt-aagtcccaagaaaaat |
110 |
Q |
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| T |
33157234 |
ttatgacccactttctataactgcgttggagcaactggttgctcttccatctcaactaatctgtcaaattttaagtggaaatttaagtcccaagaaaaat |
33157135 |
T |
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| Q |
111 |
cacagaattttgatgggactaaactaacaaactagatttaggattatacgtactatatatcacaggaagcacttgtcatgttaaagggccagtatggtat |
210 |
Q |
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| T |
33157134 |
cacagaattttgatgggactaaactaacaaactagatttaggattatac----tatatatcacaggaagcacttgtcatgttaaagggccagtatggtat |
33157039 |
T |
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| Q |
211 |
tatataacgaaagtttgattgaccagaatccttggggtcctactttatcaagatcaaaaaagagtgtcatccatcaaagttgacactgctaggtgctaat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33157038 |
tatataacgaaagtttgattgaccagaatccttggggtcctactctatcaagatcaaaaaagagtgtcatccatcaaagttgacactgctaggtgctaat |
33156939 |
T |
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| Q |
311 |
tatcttcagcacctccacaaggcacaagcctcgtgtagcctcaccattcagttttgtcaacatgtggaatcttctcatcgtcgtatcacatatgactat |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33156938 |
tatcttcagcacctccacaaggcacaagcctcgtgtagcctcaccattcagttttgtcaacatgtggaatcttctcatcgtcgtatcacatatgactat |
33156840 |
T |
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