View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_44 (Length: 415)
Name: NF17277_low_44
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_44 |
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Alignment Details
Target: chr6 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 14453154 - 14452754
Alignment:
| Q |
1 |
caaattaaacaatgaaacacacattacataaattattgatgagcagaaagcaaagataaataagtgtctttattcttaaatcattgatgcatgtgtttta |
100 |
Q |
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| T |
14453154 |
caaattaaacaatgaaacacacattacataaattattgatgagcagaaagcaaagataaataagtgtctttattcttaaatcattgatgcatgtgtttta |
14453055 |
T |
|
| Q |
101 |
gcattatgatcatagctgtgactgtgaaggccatgactgcttaattctttagaggtataagggcagtaagagcagtccaatgtttgctaattcgggcgac |
200 |
Q |
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| T |
14453054 |
gcattatgatcatagctgtgactgtgaaggccatgactgcttaattctttagaggtacaagggcagtaagagcagtccaatgtttgctaattcgggcgac |
14452955 |
T |
|
| Q |
201 |
aggacctaacatggtgccatttgatgatgatcctggggtaaaagagacagctacatagtaatctcctttgaaaatgtaggctagatttgctgtgtgagta |
300 |
Q |
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| T |
14452954 |
aggacctaacatggtgccatttgatgatgatcctggggtaaaagagacagctacatagtaatctcctttgaaaatgtaggctagatttgctgtgtgagta |
14452855 |
T |
|
| Q |
301 |
gcaaatgctgcgtccattccagcttcaaagaatgtgccagagaaaccctcaaaactatcggtgatgtacaagataccttgtactagacggttggtgccat |
400 |
Q |
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| T |
14452854 |
gcaaatgctgcgtccattccagcttcaaagaatgtgccagagaaaccctcaaaactatcggtgatgtacaagataccttgtactagacggttggtgccat |
14452755 |
T |
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| Q |
401 |
a |
401 |
Q |
| |
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| T |
14452754 |
a |
14452754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 14453208 - 14453164
Alignment:
| Q |
1 |
caaattaaacaatgaaacacac--attacataaattattgatgag |
43 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
14453208 |
caaattaaacaatgaaacacacatattacataaattattgatgag |
14453164 |
T |
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