View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17277_low_46 (Length: 411)

Name: NF17277_low_46
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17277_low_46
NF17277_low_46
[»] chr1 (2 HSPs)
chr1 (13-392)||(18302917-18303287)
chr1 (13-89)||(18340416-18340493)


Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 13 - 392
Target Start/End: Complemental strand, 18303287 - 18302917
Alignment:
Q  13 agcaaaggtgaagttggtgtttgtgaggaagaggaaggcgattttgggtttagggttcttgagggtaaataagtggggtgttgtccttgtggcgcggttg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  18303287 agcaaaggtgaagttggtgtttgtgaggaagaggaaggcgattttgggtttagggttcttgagggtaaataagtggggtgttgtccttgtggcacggtgg 18303188  T
Q  113 aagagagcaagatccttagcatcggggtcggggttggaaaacgggaagtaagattgaggttgtatttgtggggagaaaaagaagagagtgattaagagag 212  Q
    ||||||||||| ||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18303187 aagagagcaaggtcctccgcatcggggtcggggttggaaaacaggaagtaagattgaggttgtatttgtggggagaaaaagaagagagtgattaagagag 18303088  T
Q  213 caaataacaagacgatcgaaacgcgtagtttcgacatgggtttcgatcttaagtttttgtttttacttctataaaggttttgtggtgctttatagcgtta 312  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||| |||||| ||| ||||||||||||||    
T  18303087 caaataacaagacgatcgaaacgcgtaatttcgacatgggttttgatcttaagtttttgttttttcttctataagggttttatggggctttatagcgtta 18302988  T
Q  313 agtgattagaagatttttcataagaacttgaataagaatatgacgagtgtatattgttgtggagaatgagaggatctcgt 392  Q
    |||||||||||||||||||||||||||||||| ||         ||||||||||||||||||||||||||||||||||||    
T  18302987 agtgattagaagatttttcataagaacttgaaaaa---------gagtgtatattgttgtggagaatgagaggatctcgt 18302917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 18340416 - 18340493
Alignment:
Q  13 agcaaaggtgaagttggtgtttgtgaggaagaggaaggcgatttt-gggtttagggttcttgagggtaaataagtggg 89  Q
    ||||||||||| ||||||||| |||||||||||||| |||||||| || |||||||||  |||||||  |||||||||    
T  18340416 agcaaaggtgaggttggtgttggtgaggaagaggaaagcgattttaggttttagggtttgtgagggtggataagtggg 18340493  T

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