View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_48 (Length: 408)
Name: NF17277_low_48
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 7 - 392
Target Start/End: Complemental strand, 51735397 - 51735010
Alignment:
| Q |
7 |
gaagcataggcatttaatcaactttttaaccagacatgnnnnnnnnn-tatggaagcagatattgtagctcaaacgaaaaggatacatctgatgtgtatt |
105 |
Q |
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| T |
51735397 |
gaagaataggcatttaatcaactttttaaccagacatgaaaaaaaatatgtggaagcagatattgtagctcaaacgaaaaggatacatctgatgtgtatt |
51735298 |
T |
|
| Q |
106 |
atatttcttcatttttcaaaaaatatcaattacaaagacaggagaattccaaacagcatagtagactcggtttacgtctgctcaactatataacagaaat |
205 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
51735297 |
atatttcttcatttttcgaaaaatatcaattacaaagacaggagaattccaaacagcatggtagactcggtttacgtctgctcaactatataacagaaat |
51735198 |
T |
|
| Q |
206 |
agatagtgattaccaacttttgtatacctacttggt-cnnnnnnnttagaagacttcacattcaaaattatatttcttatttacagtttcctgtgtgttc |
304 |
Q |
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||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51735197 |
agatagtgattaccaacttttgtattcctacttggtaaaaaaaaattagaagacttcacattcaaaattatatttcttatttacagtttcctgtgtgttc |
51735098 |
T |
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| Q |
305 |
atttatatatgtaattgtaaacatcagtggaaataaacttacatgcaaaaaacttgagagataaactaagggtaacatgacatgattt |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51735097 |
atttatatatgtaattgtaaacatcagtggaaataaacttacatgcaaaaaacttgagagataaactaagggtaacatgacatgattt |
51735010 |
T |
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