View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17277_low_58 (Length: 392)
Name: NF17277_low_58
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_58 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 11 - 375
Target Start/End: Complemental strand, 25885518 - 25885154
Alignment:
| Q |
11 |
agaaaatcggtatgcttattcgttcgagcataattacttcggtttacaaaaagggtctgaggttgtcaagttcttcaagacaagctcatggaacaggaca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25885518 |
agaaaatcggtatgcttattcgttcgagcataattacttcggtttacaaaaagggtctgaggttgtcaagttcttcaagacaagctcatggaacaggaca |
25885419 |
T |
|
| Q |
111 |
gatagtgaatcacatggctgttgatgctcaacaactctcagatatgatgatgcagcttcaccctatatggttgatgccattgcaagtagctgtggcattg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25885418 |
gatagtgaatcacatggctgttgatgctcaacaactctcagatatgatgatgcagcttcaccctatatggttgatgccattgcaagtagctgtggcattg |
25885319 |
T |
|
| Q |
211 |
gctcttatgtatagctatgttggtgtatcagtacttgcagcattgcttggaactagcatagtgtttcttttcgcgctatatcgaaccaagagtagtaaca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25885318 |
gctcttatgtatagctatgttggtgtatcagtacttgcagcattgcttggaactagcatagtgtttcttttcgcgctatatcgaaccaagagtagtaaca |
25885219 |
T |
|
| Q |
311 |
actttcagtttcagatgatgacaagtcgcgattcgaggatgaaggcgacaaatgagttgcttaac |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25885218 |
actttcagtttcagatgatgacaagtcgcgattcgaggatgaaggcgacaaatgagttgcttaac |
25885154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 11 - 211
Target Start/End: Complemental strand, 44349363 - 44349163
Alignment:
| Q |
11 |
agaaaatcggtatgcttattcgttcgagcataattacttcggtttacaaaaagggtctgaggttgtcaagttcttcaagacaagctcatggaacaggaca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44349363 |
agaaaatcggtatgcttattcgttcgagcataatcactttggtttacaaaaagggtctaagattgtcaagttcttcaagacaagctcatggaacaggaca |
44349264 |
T |
|
| Q |
111 |
gatagtgaatcacatggctgttgatgctcaacaactctcagatatgatgatgcagcttcaccctatatggttgatgccattgcaagtagctgtggcattg |
210 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44349263 |
gatagtgaatcacatgtctgttgatgctcaacaactctcagatatgatgatgcagcttcaccctatatggttgatgccattgcaagtagctgtggcattg |
44349164 |
T |
|
| Q |
211 |
g |
211 |
Q |
| |
|
| |
|
|
| T |
44349163 |
g |
44349163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 375
Target Start/End: Complemental strand, 14320830 - 14320472
Alignment:
| Q |
17 |
tcggtatgcttattcgttcgagcataattacttcggtttacaaaaagggtctgaggttgtcaagttcttcaagacaagctcatggaacaggacagatagt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||| || || || || |
|
|
| T |
14320830 |
tcggtatgcttattcgttcgagcataatcacttcagtttacaaaaagggtttaaggttgtcaagttcttcaagacaagctcatggaactggccaaattgt |
14320731 |
T |
|
| Q |
117 |
gaatcacatggctgttgatgctcaacaactctcagatatgatgatgcagcttcaccctatatggttgatgccattgcaagtagctgtggcattggctctt |
216 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||| |||| |||||||||||||||||||||||||| | || |||||||||||| |
|
|
| T |
14320730 |
taatcacatggctgttgatgctcaacagctctcagatttgatgatgcagtttcatcctatatggttgatgccattgcaagttggtgctgcattggctctt |
14320631 |
T |
|
| Q |
217 |
atgtatagctatgttggtgtatcagtacttgcagcattgcttggaactagcatagtgtttcttttcgcgctatatcgaaccaagagtagtaacaactttc |
316 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||| || |||||||||||||||||||||| ||| | || |||||||| ||||||||||| | || | |
|
|
| T |
14320630 |
atgtacagctatgttggtctatcagtacttgcagcagtgtttggaactagcatagtgtttctcttcacactctatcgaacgaagagtagtaatagtttcc |
14320531 |
T |
|
| Q |
317 |
agtttcagatgatgacaagtcgcgattcgaggatgaaggcgacaaatgagttgcttaac |
375 |
Q |
| |
|
||||| |||| ||||| || |||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
14320530 |
agtttaagataatgacgagccgcgattcgaggatgaaggcgacaaacgagttacttaac |
14320472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 19 - 375
Target Start/End: Complemental strand, 14282679 - 14282323
Alignment:
| Q |
19 |
ggtatgcttattcgttcgagcataattacttcggtttacaaaaagggtctgaggttgtcaagttcttcaagacaagctcatggaacaggacagatagtga |
118 |
Q |
| |
|
||||||||| |||||||||||||||| ||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
14282679 |
ggtatgcttgttcgttcgagcataatcacttcagtttacaaaaagggcttaaggttgtcaagttcttcaagacaagctcatggaactggacagattgtga |
14282580 |
T |
|
| Q |
119 |
atcacatggctgttgatgctcaacaactctcagatatgatgatgcagcttcaccctatatggttgatgccattgcaagtagctgtggcattggctcttat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||| | | |||||| |||| | |
|
|
| T |
14282579 |
atcacatggctgttgatgctcaacaactctcagatttgatgatgcagtttcatcctatatggttgatgccattgcaagtttccgctgcattgtttctttt |
14282480 |
T |
|
| Q |
219 |
gtatagctatgttggtgtatcagtacttgcagcattgcttggaactagcatagtgtttcttttcgcgctatatcgaaccaagagtagtaacaactttcag |
318 |
Q |
| |
|
||||||||||||||| || || || | ||| || | ||||| | | ||| || | | | || | ||||||||||| ||||||||||| | |||||| |
|
|
| T |
14282479 |
gtatagctatgttggcgtgtctgtcgtggcatcaattcttggtattgccattgtctctttctttactctatatcgaacaaagagtagtaatagttttcag |
14282380 |
T |
|
| Q |
319 |
tttcagatgatgacaagtcgcgattcgaggatgaaggcgacaaatgagttgcttaac |
375 |
Q |
| |
|
|||||||| |||| || || ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14282379 |
tttcagataatgaggagccgtgattcgaggctgaaggcgacaaatgagttgcttaac |
14282323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 14304437 - 14304204
Alignment:
| Q |
19 |
ggtatgcttattcgttcgagcataattacttcggtttacaaaaagggtctgaggttgtcaagttcttcaagacaagctcatggaacaggacagatagtga |
118 |
Q |
| |
|
||||||||| |||| ||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||| |||||||| |||| |
|
|
| T |
14304437 |
ggtatgcttgttcgctcgagcataatcacttcggtttacaaaaagggtttaaggttgtcaagttcttcaagacaggctcatggaactggacagattgtga |
14304338 |
T |
|
| Q |
119 |
atcacatggctgttgatgctcaacaactctcagatatgatgatgcagcttcaccctatatggttgatgccattgcaagtagctgtggcattggctcttat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||| |||| ||||| ||| |||||||||| ||||| || | |||||||||||||| |
|
|
| T |
14304337 |
atcacatggctgttgatgctcaacaactctcagacttgatgaagcagtttcatcctatttggatgatgccattacaagttgccgctgcattggctcttat |
14304238 |
T |
|
| Q |
219 |
gtatagctatgttggtgtatcagtacttgcagca |
252 |
Q |
| |
|
||||||||||||||||||||| || |||||||| |
|
|
| T |
14304237 |
gtatagctatgttggtgtatctgtcgttgcagca |
14304204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University