View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_59 (Length: 389)
Name: NF17277_low_59
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_59 |
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Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 349
Target Start/End: Original strand, 29462432 - 29462758
Alignment:
| Q |
19 |
gctgttccaaaaataaaaccttctgggaaactacttcgattgagggaattgttaatatcatcattggttaacaatattgtagcttcgattatagacacat |
118 |
Q |
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| T |
29462432 |
gctgttccaaaaataaaaccttctgggaaactactacgattgagggaattgttaatatcatcattggttaacaatattgtagcttcaattatagccacat |
29462531 |
T |
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| Q |
119 |
aggtaagaattacaacaatcccagaaagaagaagaatatttcgtgccatgactatagtttgtatatttgcttcatttcaaccaaggttgcgtagcttggg |
218 |
Q |
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| T |
29462532 |
aggtaagaattacaacaatcccagaaagaagaagaatatttcgtgccatgact----tttgtatatttgcttcatttcaaccaaggttgcgtagcttggg |
29462627 |
T |
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| Q |
219 |
cccttataaataatatagtggaacttaattatgtgtgctgttaaactcaaatagttaaagaataattaagatcactctcaagannnnnnnnnaattaaga |
318 |
Q |
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| T |
29462628 |
cccttataaataatatagtggaacttaattatttgtgctgttaaactcaaatagttaaagaataattaagatcactctcaagatttttttttaattaaga |
29462727 |
T |
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| Q |
319 |
tcaataattggccgaaggcagagattatata |
349 |
Q |
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| T |
29462728 |
tcaataattggccgaaggcagagattatata |
29462758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 29420892 - 29420686
Alignment:
| Q |
18 |
agctgttccaaaaataaaaccttctgggaaactacttcgattgagggaattgttaatatcatcattggttaacaatattgtagcttcgattatagacaca |
117 |
Q |
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| T |
29420892 |
agctgttccaaaaataaaaccttctgggaaactactacgattgagggaattgttaatatcatcattggttaacaatattgtagcttcaattatagccaca |
29420793 |
T |
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| Q |
118 |
taggtaagaattacaacaatcccagaaagaagaagaatatttcgtgccatgactatagtttgtatatttgcttcatttcaaccaaggttgcgtagcttgg |
217 |
Q |
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| T |
29420792 |
caactaagaatcacaacgattcttgggagaagaagaagatttaataccatgactatagtttatatatttg-ttcctttcagccaa-attgtgtagcttgg |
29420695 |
T |
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| Q |
218 |
gcccttata |
226 |
Q |
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| T |
29420694 |
gccattata |
29420686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 122 - 226
Target Start/End: Complemental strand, 29608038 - 29607935
Alignment:
| Q |
122 |
taagaattacaacaatcccagaaagaagaagaatatttcgtgccatgactatagtttgtatatttgcttcatttcaaccaaggttgcgtagcttgggccc |
221 |
Q |
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| T |
29608038 |
taagaatcacaacaactcctgaaagaagaagaatatttaatgccatgactatagttcgtatatttgcttca-ttcaaccaaagttgcgtagcttgggccc |
29607940 |
T |
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| Q |
222 |
ttata |
226 |
Q |
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||||| |
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| T |
29607939 |
ttata |
29607935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 389
Target Start/End: Original strand, 29462783 - 29462827
Alignment:
| Q |
344 |
tatatatcatgtgactgggcccttacattacgattttatatattcc |
389 |
Q |
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| T |
29462783 |
tatatatcatgtgactgggcc-ttacaatacgattttatatattcc |
29462827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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