View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_64 (Length: 383)
Name: NF17277_low_64
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_64 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 6e-96; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 8994012 - 8994189
Alignment:
| Q |
1 |
tttcagtttttcaaaatgatatgatagatacactttacttcaacatcaataatcttaacaaaccaatttactccaactttcgtggagtataactgttgtg |
100 |
Q |
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| T |
8994012 |
tttcagtttttcaaaatgatatgatagatacactttacttcaacatcaataatcttaacaaaccaatttactccaactttcgtggagtataactgttgtg |
8994111 |
T |
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| Q |
101 |
agatcatgaatttcacctggtgagtcatccttaatacatttatataatatattcctcgtttcttcgattaaaagatat |
178 |
Q |
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| T |
8994112 |
agatcatgaatttcacctggtgagtcatccttaatacatttatataatatattcctcgtttcttcgattaaaagatat |
8994189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 9028669 - 9028846
Alignment:
| Q |
1 |
tttcagtttttcaaaatgatatgatagatacactttacttcaacatcaataatcttaacaaaccaatttactccaactttcgtggagtataactgttgtg |
100 |
Q |
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| T |
9028669 |
tttcagtttttcaaaatgatatgatagatacactttacttcaacatcaataatcttaacaaaccaatttactccaactttcgtggagtataactgttgtg |
9028768 |
T |
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| Q |
101 |
agatcatgaatttcacctggtgagtcatccttaatacatttatataatatattcctcgtttcttcgattaaaagatat |
178 |
Q |
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| T |
9028769 |
agatcatgaatttcacctggtgagtcatccttaatacatttatataatatattcctcgtttcttcgattaaaagatat |
9028846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 246 - 373
Target Start/End: Original strand, 8994203 - 8994330
Alignment:
| Q |
246 |
acgcagattgttcctgttcttctcaaaaccagatactgatgtttccatgggcaatgatcactttgataatcatgtgtggtttgtggaagctctgaacaac |
345 |
Q |
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| T |
8994203 |
acgcagattgttcctattcttctcaaaaccagatactgatgtttccatgggtaatgatcactttgataatcatgtgtggtttgtggaagctctgaacaaa |
8994302 |
T |
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| Q |
346 |
tcagggattctctctcatgttgtctctg |
373 |
Q |
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| T |
8994303 |
tcagggattctctctcgtgttgtttctg |
8994330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 246 - 373
Target Start/End: Original strand, 9028860 - 9028987
Alignment:
| Q |
246 |
acgcagattgttcctgttcttctcaaaaccagatactgatgtttccatgggcaatgatcactttgataatcatgtgtggtttgtggaagctctgaacaac |
345 |
Q |
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| T |
9028860 |
acgcagattgttcctattcttctcaaaaccagatactgatgtttccatgggtaatgatcactttgataatcatgtgtggtttgtggaagctctgaacaaa |
9028959 |
T |
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| Q |
346 |
tcagggattctctctcatgttgtctctg |
373 |
Q |
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| T |
9028960 |
tcagggattctctctcgtgttgtttctg |
9028987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 9019267 - 9019349
Alignment:
| Q |
1 |
tttcagtttttcaaaatgatatgatagatacactttacttcaacatcaataatcttaacaaaccaatttactccaactttcgt |
83 |
Q |
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| T |
9019267 |
tttcagtttttcaaaatgatatgatagatacacgttacttcaacatcaataatcttcacaaaccaatttactccaactttcgt |
9019349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 283
Target Start/End: Original strand, 9019407 - 9019458
Alignment:
| Q |
232 |
ccttctccttctcgacgcagattgttcctgttcttctcaaaaccagatactg |
283 |
Q |
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| T |
9019407 |
ccttccccttctcgactcagattgttcatgttcatctcaaaaccagatactg |
9019458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 199 - 368
Target Start/End: Complemental strand, 44884348 - 44884173
Alignment:
| Q |
199 |
atgataaaagagtatgatcatttgtcgtcaaacccttctccttc------tcgacgcagattgttcctgttcttctcaaaaccagatactgatgtttcca |
292 |
Q |
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|||||| | |||||||||| |||||| ||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
44884348 |
atgatagatgagtatgatcgtttgtcttcaaacccttctccttcaccttctcgactcagattgttcctcttcttctcaaaaccagatactgctgtttcca |
44884249 |
T |
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| Q |
293 |
tgggcaatgatcactttgataatcatgtgtggtttgtggaagctctgaacaactcagggattctctctcatgttgt |
368 |
Q |
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| T |
44884248 |
tgggaaatggtcacttttataatcatgcatggtttgtggaagctctcaacaactcagggattctgtctcgtgttgt |
44884173 |
T |
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