View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_68 (Length: 371)
Name: NF17277_low_68
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_68 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 25 - 353
Target Start/End: Complemental strand, 35378403 - 35378058
Alignment:
| Q |
25 |
caacaaagcaacaaatctatataatctttaattaagaaagaaa-----------gaaattaaaaatttaggaaccagtgagtttctctgtcgacttgttc |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35378403 |
caacaaagcaacaaatctatataatctttaattaagaaagaaaaatattaaaaagaaattaaaaatttaggaaccagtgagtttctctgtcgacttgttc |
35378304 |
T |
|
| Q |
114 |
gaattcaaggcctttgtcaacaattctgtttttgcctttagcagttcgatagcgtgagacagaagtccaaatttgattgtgtagcattctgaccaatgca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35378303 |
gaattcaaggcctttgtcaacaattctgtttttgcctttagcagtttgatagcgtgagacagaagtccaaatttgattgtgtagcattctgaccaatgca |
35378204 |
T |
|
| Q |
214 |
aaaggaaatatgatatagtatactgggtccctttcaccccatatgaaagtgtatatgctatgagcaatccatgggcttacaatcacgaactttaattatg |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35378203 |
aaaggaaatatgatatagtatactgggtccctttcaccccatatgaaagtgtatatgctatgagcaatccatgggattacaatcacgaactttaattatg |
35378104 |
T |
|
| Q |
314 |
tcacatagaa------gacagagaataatatactatgttagtcaac |
353 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||| |
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| T |
35378103 |
tcacatagaagacaaagacagagaataatatactatgttagtcaac |
35378058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 94 - 305
Target Start/End: Complemental strand, 35369439 - 35369228
Alignment:
| Q |
94 |
gtttctctgtcgacttgttcgaattcaaggcctttgtcaacaattctgtttttgcctttagcagttcgatagcgtgagacagaagtccaaatttgattgt |
193 |
Q |
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|||||||| ||||||||||| |||||||||| ||||||||||||| || |||||||| |||||||| ||| ||||||| |||| ||||||| ||||||| |
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| T |
35369439 |
gtttctctatcgacttgttcaaattcaaggcttttgtcaacaattttgcttttgcctctagcagtttcatatcgtgagatagaaatccaaatctgattgt |
35369340 |
T |
|
| Q |
194 |
gtagcattctgaccaatgcaaaaggaaatatgatatagtatactgggtccctttcaccccatatgaaagtgtatatgctatgagcaatccatgggcttac |
293 |
Q |
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||||||||||||||||| ||||||| |||||| ||| | || ||||||||||||| |||||||||||| ||||||||| || ||||||||||| ||| |
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| T |
35369339 |
gtagcattctgaccaatataaaaggacatatgagatattgtattgggtccctttcaacccatatgaaagagtatatgctgtggccaatccatgggattag |
35369240 |
T |
|
| Q |
294 |
aatcacgaactt |
305 |
Q |
| |
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|||||||||||| |
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| T |
35369239 |
aatcacgaactt |
35369228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 94 - 315
Target Start/End: Complemental strand, 35354405 - 35354184
Alignment:
| Q |
94 |
gtttctctgtcgacttgttcgaattcaaggcctttgtcaacaattctgtttttgcctttagcagttcgatagcgtgagacagaagtccaaatttgattgt |
193 |
Q |
| |
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|||||||| || |||||||||||||||||||||||||||||||| || |||| |||||||||||| | || ||||| | |||| ||||||| || |||| |
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| T |
35354405 |
gtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaatagaaatccaaatctggttgt |
35354306 |
T |
|
| Q |
194 |
gtagcattctgaccaatgcaaaaggaaatatgatatagtatactgggtccctttcaccccatatgaaagtgtatatgctatgagcaatccatgggcttac |
293 |
Q |
| |
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|||||||||||| ||| |||||||||||||| || ||| ||||| |||||||||||||||||||||| ||| ||||||||||||||||| ||||||| |
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| T |
35354305 |
gtagcattctgatcaacataaaaggaaatatgacatggtacactggatccctttcaccccatatgaaagagtacatgctatgagcaatccacgggcttag |
35354206 |
T |
|
| Q |
294 |
aatcacgaactttaattatgtc |
315 |
Q |
| |
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||||| |||||| | ||||||| |
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| T |
35354205 |
aatcatgaacttaatttatgtc |
35354184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 76 - 304
Target Start/End: Original strand, 19632551 - 19632779
Alignment:
| Q |
76 |
aaatttaggaaccagtgagtttctctgtcgacttgttcgaattcaaggcctttgtcaacaattctgtttttgcctttagcagttcgatagcgtgagacag |
175 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
19632551 |
aaatttaggaaccagttggtttctctgtcgacttgttcgaattctaggcatttgtcaacaattctgtttttgcctttagcagtttgatagcgtgagatag |
19632650 |
T |
|
| Q |
176 |
aagtccaaatttgattgtgtagcattctgaccaatgcaaaaggaaatatgatatagtatactgggtccctttcaccccatatgaaagtgtatatgctatg |
275 |
Q |
| |
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|| |||| || || ||||||||||||| || || | |||||||||||||||||||| ||||||| ||| |||||||||||| |||||||||||| |
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| T |
19632651 |
aaatccagatctggctgtgtagcattctcacaaacatataaggaaatatgatatagtatgatgggtcctgttccacccatatgaaagagtatatgctatg |
19632750 |
T |
|
| Q |
276 |
agcaatccatgggcttacaatcacgaact |
304 |
Q |
| |
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|||||||||||| |||| ||||||||||| |
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| T |
19632751 |
agcaatccatggacttagaatcacgaact |
19632779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 76 - 305
Target Start/End: Complemental strand, 19683792 - 19683563
Alignment:
| Q |
76 |
aaatttaggaaccagtgagtttctctgtcgacttgttcgaattcaaggcctttgtcaacaattctgtttttgcctttagcagttcgatagcgtgagacag |
175 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||| |||||||| |||||||||||||||||||| |||| |||||||||||| | |||||||||| || |
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| T |
19683792 |
aaatttaggaaccaattggtttctctgtcgacttggtcgaattccaggcctttgtcaacaattcttctttttcctttagcagtttggtagcgtgagatag |
19683693 |
T |
|
| Q |
176 |
aagtccaaatttgattgtgtagcattctgaccaatgcaaaaggaaatatgatatagtatactgggtccctttcaccccatatgaaagtgtatatgctatg |
275 |
Q |
| |
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|| |||| || ||||| |||||||||||||||||| | |||| ||||||| |||||| |||||| | ||| ||||||| |||| |||||||||||| |
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| T |
19683692 |
aaatccatatctgattatgtagcattctgaccaatatataagggaatatgagatagtaggttgggtctcgttccacccatataaaagagtatatgctatg |
19683593 |
T |
|
| Q |
276 |
agcaatccatgggcttacaatcacgaactt |
305 |
Q |
| |
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||||||||| ||||||| |||||||||||| |
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| T |
19683592 |
agcaatccacgggcttagaatcacgaactt |
19683563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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