View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_69 (Length: 370)
Name: NF17277_low_69
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_69 |
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| [»] chr6 (1 HSPs) |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 34688001 - 34688370
Alignment:
| Q |
1 |
ccttgcagagacattgtatagcatcatgcagttccttctttgatgacttatcgctttttggtatatgtacttgatttctgtttctcaattgttactgtaa |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34688001 |
ccttgccgagacattgtatagcatcatgcagttccttctttgatgacttatcgctttttggtatatgtacttgatttctgtttctcaattgttactgtaa |
34688100 |
T |
|
| Q |
101 |
ccacaattctgtttgtcttgtttggttgcatacatttatatgctttcttgtgttgactttgttgaaaagttgcaccttgatgggccagctttctagttgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34688101 |
ccacaattctgtttgtcttgtttggttgcatacatttatatgctttcttgtgttgactttgttgaaaagttgcaccttgatgggccagctttctagttgc |
34688200 |
T |
|
| Q |
201 |
tatatcttgtttttgtagtctcttcatttatcaatattgtttttgatttggttttgttggatggctgtaatacagatgagtgatgatgagacagaatttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34688201 |
tatatcttgtttttgtagtctcttcatttatcaatattgtttctgatttggttttgttggatggctgtaatacagatgagtgatgatgagacagaatttc |
34688300 |
T |
|
| Q |
301 |
ctgacagtactgattcatctggcagtactgatgagttaattgaaaagcttgaggatgaactagatgatga |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34688301 |
ctgacagtactgattcatctggcagtactgatgagttaattgaaaagcttgaggatgaactagatgatga |
34688370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 26985942 - 26986312
Alignment:
| Q |
1 |
ccttgcagagacattgtatagcatcatgcagttccttctttgatgacttatcgctttttggtatatgtac-ttgatttctgtttctcaattgttactgta |
99 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26985942 |
ccttgccgagacattgtatagcatcatgcagttccttctttgatgactaatcgctttttggtatatgtaccttgatttctgtttctcaattgttactgta |
26986041 |
T |
|
| Q |
100 |
accacaattctgtttgtcttgtttggttgcatacatttatatgctttcttgtgttgactttgttgaaaagttgcaccttgatgggccagctttctagttg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26986042 |
accacaattctgtttgtcttgtttggttgcatacatttatatgctttcttgtgttgactttgttgaaaagttgcaccttgatgggccagctttctagttg |
26986141 |
T |
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| Q |
200 |
ctatatcttgtttttgtagtctcttcatttatcaatattgtttttgatttggttttgttggatggctgtaatacagatgagtgatgatgagacagaattt |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26986142 |
ctatatcttgtttttgtagtctcttcatttatcaatattgtttctgatttggttttgttggatggctgtaatacagatgagtgatgatgagacagaattt |
26986241 |
T |
|
| Q |
300 |
cctgacagtactgattcatctggcagtactgatgagttaattgaaaagcttgaggatgaactagatgatga |
370 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26986242 |
cctgacagtaccgattcatctggcagtactgatgagttaattgaaaagcttgaggatgaactagatgatga |
26986312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 97 - 370
Target Start/End: Original strand, 27025845 - 27026118
Alignment:
| Q |
97 |
gtaaccacaattctgtttgtcttgtttggttgcatacatttatatgctttcttgtgttgactttgttgaaaagttgcaccttgatgggccagctttctag |
196 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
27025845 |
gtaaccacaattctgtttgtcttgtttggttgcatacatttatatgctttcttgtgttgactttgttgagaggttgcaccttgatgggccagctttctag |
27025944 |
T |
|
| Q |
197 |
ttgctatatcttgtttttgtagtctcttcatttatcaatattgtttttgatttggttttgttggatggctgtaatacagatgagtgatgatgagacagaa |
296 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27025945 |
ttgctatatcttgtttttgtagtctcttcatttatcgatattgtttctaatttggttttgttggatggctgtaatacagatgagtgatgatgagacagaa |
27026044 |
T |
|
| Q |
297 |
tttcctgacagtactgattcatctggcagtactgatgagttaattgaaaagcttgaggatgaactagatgatga |
370 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27026045 |
tttcctgacagtaccgattcatctggcagtactgatgagttaattgaaaagcttgaggatgaactagatgatga |
27026118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 9 - 370
Target Start/End: Complemental strand, 27079421 - 27079052
Alignment:
| Q |
9 |
agacattgtatagcatcatgcagttccttctttgatgacttatcgctttttggtatatgtac-ttgatttctgtttctcaattgttact---------gt |
98 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||| ||||| ||||||| |||||||||||| || |
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| T |
27079421 |
agacattgtatagcatcatgaagttccttctttgatgactgatcgatttttggtatatgtaccttgatatctgtttgtcaattgttactaacacagcagt |
27079322 |
T |
|
| Q |
99 |
aaccacaattctgtttgtcttgtttggttgcatacatttatatgctttcttgtgttgactttgttgaaaagttgcaccttgatgggccagctttctagtt |
198 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||| |
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| T |
27079321 |
aaccacaattctttttgtcttgtttggttgcatacatttataagctttcttgtgttgattttgttgaaaggttgcaccttgatgggccagttttctagtt |
27079222 |
T |
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| Q |
199 |
gctatatcttgtttttgtagtctcttcatttatcaatattgtttttgatttggttttgttggatggctgtaatacagatgagtgatgatgagacagaatt |
298 |
Q |
| |
|
|||||||||||||||||| ||||| ||| |||| ||||||||| ||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| |
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| T |
27079221 |
gctatatcttgtttttgttgtctc-tca-ttatggatattgtttctgatttggttttgttgggtggctgtagtacagatgagtcatgatgagacagaatt |
27079124 |
T |
|
| Q |
299 |
tcctgacagtactgattcatctggcagtactgatgagttaattgaaaagcttgaggatgaactagatgatga |
370 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||| ||| |||| |||||||||||||| |||||||| |
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| T |
27079123 |
tcctgacagtaccgattcatctggcagtactgatgagttcattcaaaatcttgaggatgaacttgatgatga |
27079052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 217 - 334
Target Start/End: Complemental strand, 27101510 - 27101394
Alignment:
| Q |
217 |
agtctcttcatttatcaatattgtttttgatttggttttgttggatggctgtaatacagatgagtgatgatgagacagaatttcctgacagtactgattc |
316 |
Q |
| |
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|||||||||||||||| |||||| | ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||| |
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| T |
27101510 |
agtctcttcatttatcgatattgctactgatttggttt-gttggatggctgtaatacatatgagtgatgatgagacagaatttactgacagtaccgattc |
27101412 |
T |
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| Q |
317 |
atctggcagtactgatga |
334 |
Q |
| |
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|| || |||||||||||| |
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| T |
27101411 |
atttgacagtactgatga |
27101394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 27025776 - 27025819
Alignment:
| Q |
1 |
ccttgcagagacattgtatagcatcatgcagttccttctttgat |
44 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27025776 |
ccttgccgagacattgtatagcatcatgcagttccttctttgat |
27025819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 30230600 - 30230803
Alignment:
| Q |
14 |
ttgtatagcatcatgcagttccttctttgatgacttatcgctttttggtatatgtac-ttgatttctgtttctcaattgttact-----gtaaccacaat |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||| || || |||||||||||||| ||||||||| ||| ||| ||||||| ||||||||||| |
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| T |
30230600 |
ttgtatagcatcatgcagttccttctttgatgactggtcactctttggtatatgtaccttgatttctatttgtcagttgttacacagcagtaaccacaat |
30230699 |
T |
|
| Q |
108 |
tctgtttgtcttgtttggttgcatacatttatatgctttcttgtgttgactttgttgaaaagttgcaccttgatgggccagctttctagttgctatatct |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| || |||||||||||| |||| || |
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| T |
30230700 |
tctgtttgtcttgtttggttgcatacatttat--gctttcttgtgttgattttgttgaaaagttgcaccttgatggacctgctttctagttgatatacct |
30230797 |
T |
|
| Q |
208 |
tgtttt |
213 |
Q |
| |
|
|||||| |
|
|
| T |
30230798 |
tgtttt |
30230803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 209 - 370
Target Start/End: Original strand, 30228631 - 30228791
Alignment:
| Q |
209 |
gtttttgtagtctcttcatttatcaatattgtttttgatttggttttgttggatggctgtaatacagatgagtgatgatgagacagaatttcctgacagt |
308 |
Q |
| |
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|||||||| ||||||||||| || ||||||||| ||||||| ||||||||| | |||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
30228631 |
gtttttgtcgtctcttcatt-atggatattgtttctgatttgattttgttggtttgctgtagtacagatgagtgatgatgagacaaaatttcctgacagt |
30228729 |
T |
|
| Q |
309 |
actgattcatctggcagtactgatgagttaattgaaaagcttgaggatgaactagatgatga |
370 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||| |||| |||||||||||||| |||||||| |
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|
| T |
30228730 |
accgattcatctggcagtactgatgagttcattcaaaatcttgaggatgaacttgatgatga |
30228791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 244 - 370
Target Start/End: Original strand, 30230857 - 30230986
Alignment:
| Q |
244 |
tgatttggttttgttggatggctgtaatacagatgagtgatgatgagacagaatttcctgacagtactgattcatctggcagtactgatgagttaattga |
343 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| | || |||||||||||||||||||||||| | ||| | |
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| T |
30230857 |
tgatttggttttgttgggtggctgtaatacagatgagtgatggcgagacagaatttcctgacggcaccgattcatctggcagtactgatgagctcattca |
30230956 |
T |
|
| Q |
344 |
a---aagcttgaggatgaactagatgatga |
370 |
Q |
| |
|
| || ||||||||||||||||||||||| |
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| T |
30230957 |
aaataaccttgaggatgaactagatgatga |
30230986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 134 - 214
Target Start/End: Original strand, 30228477 - 30228557
Alignment:
| Q |
134 |
atttatatgctttcttgtgttgactttgttgaaaagttgcaccttgatgggccagctttctagttgctatatcttgttttt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
30228477 |
atttatatgctttcttgtgttgactttgctgaaaggttacaccttgatgggccagctttctagttgctatatcttgttttt |
30228557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 30228414 - 30228475
Alignment:
| Q |
8 |
gagacattgtatagcatcatgcagttccttctttgatgacttatcgctttttggtatatgta |
69 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30228414 |
gagatattgtatagcatcatgcagttccttctttgatgactgatcgctttttggtatatgta |
30228475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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