View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_72 (Length: 361)
Name: NF17277_low_72
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_72 |
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| [»] scaffold0057 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 4 - 264
Target Start/End: Original strand, 23360804 - 23361066
Alignment:
| Q |
4 |
tcactttactctctgttcctc--acaattcaggttttttcaaagaagagaaatgtcggtgacttcaagctctagaggaagaccaggtaccagagaaacta |
101 |
Q |
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| T |
23360804 |
tcactttactctctgttcctctcacaattcaggttttttcaaagaagagaaatgtcggtgacttcaagctctagaggaagaccaggtaccagagaaacta |
23360903 |
T |
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| Q |
102 |
gcccagagagaaccaaagtttggactgaacccaaacccaaaacacccagaaaagtctctgtagtttactacctctcacgtaatggccaccttgagcaccc |
201 |
Q |
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| T |
23360904 |
gcccagagagaaccaaagtttggactgaacccaaacccaaaacacccagaaaagtctctgtagtttactacctctcacgtaatggccaccttgaacaccc |
23361003 |
T |
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| Q |
202 |
ccatttcatggaagtccctctctcttcaccccatggtctctacctcaaaggtatgtactctca |
264 |
Q |
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| T |
23361004 |
ccatttcatggaagtccctctctcttcaccccatggtctctacctcaaaggtacgtactctca |
23361066 |
T |
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Target: scaffold0057 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 30162 - 30122
Alignment:
| Q |
267 |
tgtagcaccgacacttctgatcaaatgtgtgtctgatgtcc |
307 |
Q |
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| T |
30162 |
tgtagtaccgacacttctgatcaaaggtgtgtctggtgtcc |
30122 |
T |
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