View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17277_low_73 (Length: 357)

Name: NF17277_low_73
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17277_low_73
NF17277_low_73
[»] chr4 (21 HSPs)
chr4 (17-339)||(31351568-31351889)
chr4 (113-231)||(9460163-9460278)
chr4 (113-231)||(13538246-13538362)
chr4 (121-231)||(35010382-35010490)
chr4 (121-231)||(50263989-50264096)
chr4 (123-231)||(35130612-35130718)
chr4 (121-231)||(38415494-38415602)
chr4 (113-231)||(42657503-42657619)
chr4 (113-230)||(28091320-28091435)
chr4 (113-218)||(49479470-49479573)
chr4 (121-230)||(45333451-45333560)
chr4 (121-230)||(45341141-45341250)
chr4 (117-231)||(54733272-54733383)
chr4 (121-230)||(26336848-26336957)
chr4 (121-200)||(10601898-10601975)
chr4 (113-214)||(7921602-7921701)
chr4 (153-231)||(55967781-55967859)
chr4 (125-217)||(3746390-3746479)
chr4 (153-200)||(2629613-2629660)
chr4 (156-200)||(11128751-11128795)
chr4 (166-194)||(16556488-16556516)
[»] chr5 (10 HSPs)
chr5 (113-230)||(30327657-30327772)
chr5 (113-218)||(24793488-24793591)
chr5 (113-218)||(28282349-28282452)
chr5 (113-231)||(43549066-43549182)
chr5 (116-231)||(43405998-43406111)
chr5 (127-229)||(32398219-32398319)
chr5 (121-198)||(8032893-8032968)
chr5 (113-231)||(15409153-15409269)
chr5 (166-200)||(8571827-8571861)
chr5 (127-216)||(31478693-31478780)
[»] scaffold0166 (1 HSPs)
scaffold0166 (113-218)||(35871-35974)
[»] chr8 (9 HSPs)
chr8 (113-231)||(42445755-42445871)
chr8 (123-227)||(28300092-28300194)
chr8 (113-231)||(12959708-12959824)
chr8 (121-200)||(15837171-15837248)
chr8 (113-231)||(13147735-13147850)
chr8 (166-200)||(40393352-40393386)
chr8 (121-154)||(19756427-19756460)
chr8 (114-154)||(24182628-24182668)
chr8 (156-192)||(44923317-44923353)
[»] chr3 (15 HSPs)
chr3 (113-231)||(38745284-38745400)
chr3 (121-201)||(41259952-41260030)
chr3 (113-231)||(21892514-21892629)
chr3 (121-200)||(32594596-32594670)
chr3 (121-218)||(9737575-9737670)
chr3 (116-216)||(36786566-36786666)
chr3 (116-230)||(33439978-33440090)
chr3 (113-231)||(51829548-51829663)
chr3 (127-237)||(21177040-21177147)
chr3 (113-231)||(54240605-54240721)
chr3 (130-231)||(17002900-17002996)
chr3 (112-231)||(55009523-55009640)
chr3 (116-154)||(11988925-11988963)
chr3 (154-231)||(34875652-34875729)
chr3 (185-218)||(49284975-49285008)
[»] chr7 (21 HSPs)
chr7 (113-231)||(9667222-9667338)
chr7 (121-230)||(23198524-23198630)
chr7 (121-229)||(23982018-23982124)
chr7 (113-231)||(27227255-27227371)
chr7 (153-235)||(36877001-36877083)
chr7 (116-231)||(27744580-27744692)
chr7 (121-224)||(37307667-37307768)
chr7 (113-231)||(32958490-32958606)
chr7 (113-201)||(47684478-47684564)
chr7 (171-231)||(38524880-38524940)
chr7 (121-228)||(41780464-41780568)
chr7 (121-204)||(45725122-45725203)
chr7 (126-216)||(13054611-13054699)
chr7 (113-218)||(25091175-25091277)
chr7 (113-231)||(44165878-44165994)
chr7 (113-154)||(7683454-7683495)
chr7 (120-154)||(39584252-39584286)
chr7 (113-154)||(40097907-40097948)
chr7 (170-230)||(30746009-30746068)
chr7 (168-200)||(45284823-45284855)
chr7 (172-236)||(45664673-45664737)
[»] chr2 (18 HSPs)
chr2 (113-231)||(34319806-34319922)
chr2 (116-219)||(14368410-14368511)
chr2 (121-218)||(8915578-8915673)
chr2 (113-218)||(37123570-37123673)
chr2 (116-231)||(31068887-31069000)
chr2 (123-231)||(9198932-9199037)
chr2 (170-231)||(3108168-3108229)
chr2 (124-198)||(44287825-44287897)
chr2 (131-231)||(9294131-9294228)
chr2 (113-154)||(20156980-20157021)
chr2 (116-225)||(13874446-13874554)
chr2 (116-225)||(14014571-14014679)
chr2 (113-231)||(34028098-34028206)
chr2 (128-221)||(9932020-9932111)
chr2 (161-231)||(32087372-32087442)
chr2 (153-198)||(21297422-21297467)
chr2 (168-200)||(3596284-3596316)
chr2 (152-192)||(33816404-33816444)
[»] chr1 (9 HSPs)
chr1 (120-230)||(35996980-35997088)
chr1 (121-228)||(8757273-8757378)
chr1 (120-154)||(2661631-2661665)
chr1 (153-231)||(7550013-7550091)
chr1 (181-231)||(50462183-50462233)
chr1 (163-231)||(48977437-48977505)
chr1 (113-154)||(1927613-1927654)
chr1 (168-200)||(10632728-10632760)
chr1 (152-192)||(14396481-14396521)
[»] chr6 (9 HSPs)
chr6 (113-218)||(7326322-7326425)
chr6 (121-231)||(6922633-6922741)
chr6 (121-231)||(7339497-7339604)
chr6 (117-231)||(12606651-12606763)
chr6 (121-231)||(5925580-5925690)
chr6 (121-218)||(8176925-8177020)
chr6 (153-231)||(20599421-20599499)
chr6 (194-231)||(11063320-11063357)
chr6 (113-150)||(12654488-12654525)
[»] scaffold0040 (1 HSPs)
scaffold0040 (116-231)||(58639-58750)
[»] scaffold0291 (1 HSPs)
scaffold0291 (113-201)||(7212-7298)
[»] scaffold0178 (1 HSPs)
scaffold0178 (122-174)||(9703-9753)


Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 339
Target Start/End: Original strand, 31351568 - 31351889
Alignment:
Q  17 taggtaactgtctatatattcatatcatatatggcacaattaaagacttgtgattaaatatatacctttgcatgtgaannnnnnnnnnnnnnnnngaagt 116  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||                    ||||    
T  31351568 taggtaactgtctatatattcatatcatatatagcacaattaaagacttgtgattaaatatatacctttgcatgtgttttttttttttttttgatcaagt 31351667  T
Q  117 agtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctaccaa 216  Q
    ||| ||||||||||||||||||||||||||||||||||  |||||| ||| ||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  31351668 agtctagtggctagattcacacatattatgtgtggaga--aatgggaaatccggagttcgaaccccgacccctgcacaaattatctctggtagctaccaa 31351765  T
Q  217 ctaagttacacttactggatcctttgcatgtgaaatttaatttgctttgagatgatattcaatgatgaaagtaatt-aactcaaatgaatcaaaagaaca 315  Q
    || || ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31351766 ctgagctacacttacggaatcctttgcatgtgaaatttaatttgctttgagatgatattcaatgatgaaagtaattaaactcaaatgaatcaaaagaaca 31351865  T
Q  316 aaaatagacaatgctggtaacaga 339  Q
    ||||||||||||||||||||||||    
T  31351866 aaaatagacaatgctggtaacaga 31351889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 113 - 231
Target Start/End: Complemental strand, 9460278 - 9460163
Alignment:
Q  113 aagtagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagcta 212  Q
    ||||||||||||||||| ||||||||| ||||||||||||||  ||||||||||  ||| || |||||||||||| | ||||||||||||||||||||||    
T  9460278 aagtagtttagtggctatattcacacacattatgtgtggaga--aatggggaatatgggatttgaaccccgaccc-tacacaaattatctctgatagcta 9460182  T
Q  213 ccaactaagttacacttac 231  Q
    |||||||||||||| ||||    
T  9460181 ccaactaagttacatttac 9460163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 113 - 231
Target Start/End: Original strand, 13538246 - 13538362
Alignment:
Q  113 aagtagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagcta 212  Q
    ||||||| ||||||||||||||||||| ||||||| ||||||  | |||| |||| ||||||||||| ||  ||||| ||||||||||||||||||||||    
T  13538246 aagtagtctagtggctagattcacacacattatgtatggaga--agtgggaaatttggggttcgaactccagcccctacacaaattatctctgatagcta 13538343  T
Q  213 ccaactaagttacacttac 231  Q
    |||||| || |||||||||    
T  13538344 ccaactgagctacacttac 13538362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 121 - 231
Target Start/End: Original strand, 35010382 - 35010490
Alignment:
Q  121 tagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctaccaactaa 220  Q
    ||||||||||||||| ||| ||||||||||||||  | |||| ||| ||| |||||||||||||| |||||||||||||||||||||||||||||||| |    
T  35010382 tagtggctagattcatacacattatgtgtggaga--agtgggaaatccggagttcgaaccccgactcctgcacaaattatctctgatagctaccaactga 35010479  T
Q  221 gttacacttac 231  Q
    | || ||||||    
T  35010480 gctaaacttac 35010490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 121 - 231
Target Start/End: Original strand, 50263989 - 50264096
Alignment:
Q  121 tagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctaccaactaa 220  Q
    ||||||||||||||||||| || |||||||||||  | |||||||| |||| ||||| ||||| ||||||||||||||||| ||| |||||||||||| |    
T  50263989 tagtggctagattcacacacatcatgtgtggaga--agtggggaatccgggtttcgagccccggcccctgcacaaattatccctg-tagctaccaactga 50264085  T
Q  221 gttacacttac 231  Q
    |||||||||||    
T  50264086 gttacacttac 50264096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 123 - 231
Target Start/End: Original strand, 35130612 - 35130718
Alignment:
Q  123 gtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctaccaactaagt 222  Q
    ||||||||||||||||| || ||||||| |||  | |||| ||| |||||||||||||||| ||||||||||||||||||||| |||||||||||| |      
T  35130612 gtggctagattcacacacataatgtgtgaaga--agtgggaaatccggggttcgaaccccggcccctgcacaaattatctctggtagctaccaactgaac 35130709  T
Q  223 tacacttac 231  Q
    |||||||||    
T  35130710 tacacttac 35130718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 121 - 231
Target Start/End: Original strand, 38415494 - 38415602
Alignment:
Q  121 tagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctaccaactaa 220  Q
    ||||||||||||||||||| ||||||| || |||  ||||| ||||| |||||||||| || |||| ||||||||||||||  ||||||||||||||| |    
T  38415494 tagtggctagattcacacacattatgtatgaaga--aatggagaatttggggttcgaatcctgacctctgcacaaattatccttgatagctaccaactga 38415591  T
Q  221 gttacacttac 231  Q
    | |||||||||    
T  38415592 gctacacttac 38415602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 113 - 231
Target Start/End: Complemental strand, 42657619 - 42657503
Alignment:
Q  113 aagtagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagcta 212  Q
    |||||||||||||| || ||||||||| |||||||||| |||  | ||| ||||  ||||||||||| |||||||||  | |||||||||||||||||||    
T  42657619 aagtagtttagtggttaaattcacacacattatgtgtgaaga--agtggagaatgtggggttcgaactccgacccctatataaattatctctgatagcta 42657522  T
Q  213 ccaactaagttacacttac 231  Q
    |||||| || |||||||||    
T  42657521 ccaactgagctacacttac 42657503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 113 - 230
Target Start/End: Original strand, 28091320 - 28091435
Alignment:
Q  113 aagtagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagcta 212  Q
    ||||||| || | |||||||||||||| ||||||||||||||  | ||||||||| || ||||||||| | | ||||||| |||||||| ||||||||||    
T  28091320 aagtagtctaattgctagattcacacacattatgtgtggaga--agtggggaatttggagttcgaacctcaatccctgcataaattatcactgatagcta 28091417  T
Q  213 ccaactaagttacactta 230  Q
    |||||| || ||||||||    
T  28091418 ccaactgagctacactta 28091435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 113 - 218
Target Start/End: Complemental strand, 49479573 - 49479470
Alignment:
Q  113 aagtagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagcta 212  Q
    ||||||| |||||| |||||||||||| ||||||||||||||  | | || |||||||| |||||||||| |||||| || ||||||| |||||||||||    
T  49479573 aagtagtctagtggttagattcacacacattatgtgtggaga--agttggaaattcgggattcgaacccctacccctacataaattatttctgatagcta 49479476  T
Q  213 ccaact 218  Q
    ||||||    
T  49479475 ccaact 49479470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 121 - 230
Target Start/End: Original strand, 45333451 - 45333560
Alignment:
Q  121 tagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctaccaactaa 220  Q
    ||||||||||||||||||| ||||| ||||  ||||| |||||||||||||||| ||||||| ||| ||||| || ||||| ||||||| |||||||  |    
T  45333451 tagtggctagattcacacacattatatgtgtggagaagtggggaattcggggtttgaaccccaacctctgcagaagttatccctgatagttaccaacaga 45333550  T
Q  221 gttacactta 230  Q
    | ||||||||    
T  45333551 gctacactta 45333560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 121 - 230
Target Start/End: Original strand, 45341141 - 45341250
Alignment:
Q  121 tagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctaccaactaa 220  Q
    ||||||||||||||||||| ||||| ||||  ||||| |||||||||||||||| ||||||| ||| ||||| || ||||| ||||||| |||||||  |    
T  45341141 tagtggctagattcacacacattatatgtgtggagaagtggggaattcggggtttgaaccccaacctctgcagaagttatccctgatagttaccaacaga 45341240  T
Q  221 gttacactta 230  Q
    | ||||||||    
T  45341241 gctacactta 45341250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 117 - 231
Target Start/End: Original strand, 54733272 - 54733383
Alignment:
Q  117 agtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctaccaa 216  Q
    ||||||||||||||||||||||| |||||||||||||||   || ||||| ||   |||||||||| ||| |||||||||| ||| ||| ||||||||||    
T  54733272 agtttagtggctagattcacacacattatgtgtggagag--gtgaggaatccgtaattcgaaccccaaccactgcacaaatgatc-ctggtagctaccaa 54733368  T
Q  217 ctaagttacacttac 231  Q
    || ||||| ||||||    
T  54733369 ctgagttatacttac 54733383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 121 - 230
Target Start/End: Original strand, 26336848 - 26336957
Alignment:
Q  121 tagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctaccaactaa 220  Q
    ||||||||||||||||||| ||||| ||||  ||||| |||||||||||||||| |||| || ||| ||||| || ||||| ||| ||| |||||||  |    
T  26336848 tagtggctagattcacacacattatatgtgtggagaactggggaattcggggtttgaactccaacctctgcagaagttatccctggtagttaccaacaga 26336947  T
Q  221 gttacactta 230  Q
    | ||||||||    
T  26336948 gctacactta 26336957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 121 - 200
Target Start/End: Complemental strand, 10601975 - 10601898
Alignment:
Q  121 tagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattat 200  Q
    ||||||| | |||||||||||||||||||  |||||| ||||||||  ||||||| ||||||||||| |||| |||||||    
T  10601975 tagtggccatattcacacatattatgtgt--agagaagtggggaatctggggttcaaaccccgacccttgcaaaaattat 10601898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 214
Target Start/End: Complemental strand, 7921701 - 7921602
Alignment:
Q  113 aagtagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagcta 212  Q
    ||||||| ||||||||| ||||||||| || |||||||  ||||| || ||||| ||| ||| |||||||||||  || |||||||||| |||| |||||    
T  7921701 aagtagtctagtggctaaattcacacacatgatgtgtg--gagaagtgaggaatccggcgtttgaaccccgacctttgtacaaattatccctgacagcta 7921604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 55967859 - 55967781
Alignment:
Q  153 gagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctaccaactaagttacacttac 231  Q
    ||||| |||||||| |||||||||||||||| ||||| |||||||||||  || ||| |||||| | || |||||||||    
T  55967859 gagaagtggggaatccggggttcgaaccccggcccctacacaaattatccttggtagttaccaattgagctacacttac 55967781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 3746390 - 3746479
Alignment:
Q  125 ggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctaccaac 217  Q
    ||||||||| ||||| ||||| ||||||||  |||||| ||| ||||||||||||| | |||||| |||| | |||||||| |||||||||||    
T  3746390 ggctagatttacacacattatatgtggaga--aatgggaaatccggggttcgaacctc-acccctacacataatatctctggtagctaccaac 3746479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 200
Target Start/End: Complemental strand, 2629660 - 2629613
Alignment:
Q  153 gagaaatggggaattcggggttcgaaccccgacccctgcacaaattat 200  Q
    ||||| |||||  ||||||||||||||||||||||||||| |||||||    
T  2629660 gagaagtggggtgttcggggttcgaaccccgacccctgcataaattat 2629613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 11128795 - 11128751
Alignment:
Q  156 aaatggggaattcggggttcgaaccccgacccctgcacaaattat 200  Q
    ||||||| | ||||||||||||||||| ||||||||| |||||||    
T  11128795 aaatgggaagttcggggttcgaacccctacccctgcataaattat 11128751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 194
Target Start/End: Complemental strand, 16556516 - 16556488
Alignment:
Q  166 ttcggggttcgaaccccgacccctgcaca 194  Q
    |||||||||||||||||||||||||||||    
T  16556516 ttcggggttcgaaccccgacccctgcaca 16556488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 113 - 230
Target Start/End: Complemental strand, 30327772 - 30327657
Alignment:
Q  113 aagtagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagcta 212  Q
    ||||||||||||||||||||||||||||||||||||||||||  | ||| ||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  30327772 aagtagtttagtggctagattcacacatattatgtgtggaga--agtggcgaattcggggttcgaaccccggcccctgcataaattatctctgatagcta 30327675  T
Q  213 ccaactaagttacactta 230  Q
    |||||| || ||||||||    
T  30327674 ccaactgagctacactta 30327657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 113 - 218
Target Start/End: Complemental strand, 24793591 - 24793488
Alignment:
Q  113 aagtagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagcta 212  Q
    ||||||| ||||||||||||||||| | |||||||||  ||||||||||| |||  |||||||| |||||||||||||||||||||||||||||||||||    
T  24793591 aagtagtctagtggctagattcacatacattatgtgt--agagaaatgggaaatctggggttcggaccccgacccctgcacaaattatctctgatagcta 24793494  T
Q  213 ccaact 218  Q
    ||||||    
T  24793493 ccaact 24793488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 113 - 218
Target Start/End: Complemental strand, 28282452 - 28282349
Alignment:
Q  113 aagtagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagcta 212  Q
    ||||||| |||||| |||||||||||||||||||||||  ||||| || ||||| || |||| ||| | |||||||| ||||||||||||||  ||||||    
T  28282452 aagtagtctagtggttagattcacacatattatgtgtg--gagaagtgaggaatacgaggtttgaatctcgacccctccacaaattatctctagtagcta 28282355  T
Q  213 ccaact 218  Q
    ||||||    
T  28282354 ccaact 28282349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 113 - 231
Target Start/End: Original strand, 43549066 - 43549182
Alignment:
Q  113 aagtagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagcta 212  Q
    |||||| ||||||||||||||||||||||| |||||||| ||||| || || |||||||||| ||||| |  | ||| |||||||||||||||||| |||    
T  43549066 aagtagcttagtggctagattcacacatatcatgtgtgg-gagaagtgagg-attcggggtttgaacctctgctcctacacaaattatctctgataacta 43549163  T
Q  213 ccaactaagttacacttac 231  Q
    |||| | || |||||||||    
T  43549164 ccaattgagctacacttac 43549182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 231
Target Start/End: Original strand, 43405998 - 43406111
Alignment:
Q  116 tagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctacca 215  Q
    |||| |||||| |||| ||||||| ||||||||||||||  | ||| ||||  | ||||||||| |||  || ||||||||||||||||| |||||||||    
T  43405998 tagtctagtggttagactcacacacattatgtgtggaga--agtggagaatctgaggttcgaactccggtccttgcacaaattatctctggtagctacca 43406095  T
Q  216 actaagttacacttac 231  Q
    ||| || |||||||||    
T  43406096 actgagctacacttac 43406111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 229
Target Start/End: Complemental strand, 32398319 - 32398219
Alignment:
Q  127 ctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctaccaactaagttaca 226  Q
    ||||||||||| | ||||||||||||||  | |||||||| ||  |||||||||||||| |||||||| | |||| |||||| |||| |||  |||||||    
T  32398319 ctagattcacatacattatgtgtggaga--agtggggaatacgttgttcgaaccccgactcctgcacataatatccctgataactacaaaccgagttaca 32398222  T
Q  227 ctt 229  Q
    |||    
T  32398221 ctt 32398219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 198
Target Start/End: Complemental strand, 8032968 - 8032893
Alignment:
Q  121 tagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaatt 198  Q
    ||||||||| ||||||||| ||||||||||  ||||  ||| ||||| |||||||||| ||| |||||||||||||||    
T  8032968 tagtggctaaattcacacacattatgtgtg--gagatgtggagaatttggggttcgaatcccaacccctgcacaaatt 8032893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 231
Target Start/End: Complemental strand, 15409269 - 15409153
Alignment:
Q  113 aagtagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctga-tagct 211  Q
    ||||||| ||||||||| ||||||||| |||||||||  | |||| ||||||||  ||| ||| ||||||| ||| | ||||||||||| || | |||||    
T  15409269 aagtagtctagtggctaaattcacacacattatgtgt--aaagaagtggggaatctgggattcaaaccccggccc-tacacaaattatcccttaatagct 15409173  T
Q  212 accaactaagttacacttac 231  Q
    ||||||| || |||||||||    
T  15409172 accaactgagctacacttac 15409153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 200
Target Start/End: Complemental strand, 8571861 - 8571827
Alignment:
Q  166 ttcggggttcgaaccccgacccctgcacaaattat 200  Q
    ||||||||||||||||||||||||||| |||||||    
T  8571861 ttcggggttcgaaccccgacccctgcataaattat 8571827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 216
Target Start/End: Original strand, 31478693 - 31478780
Alignment:
Q  127 ctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctaccaa 216  Q
    ||||||||||||| |||||||||  |||||| ||| |||| ||  |||||||| ||| ||| ||||||||||||||| | | ||||||||    
T  31478693 ctagattcacacacattatgtgt--agagaagtggagaatccgaagttcgaactccggcccttgcacaaattatctccggtggctaccaa 31478780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 113 - 218
Target Start/End: Complemental strand, 35974 - 35871
Alignment:
Q  113 aagtagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagcta 212  Q
    ||||||| ||||||||||||||||| | |||||||||  ||||||||||| |||  |||||||| |||||||||||||||||||||||||||||||||||    
T  35974 aagtagtctagtggctagattcacatacattatgtgt--agagaaatgggaaatctggggttcggaccccgacccctgcacaaattatctctgatagcta 35877  T
Q  213 ccaact 218  Q
    ||||||    
T  35876 ccaact 35871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 113 - 231
Target Start/End: Complemental strand, 42445871 - 42445755
Alignment:
Q  113 aagtagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagcta 212  Q
    ||||||||||||||||||||||||||| |||||||||  ||| || |||  ||||| | |||||||||| |||| |||||||||||||||||||||||||    
T  42445871 aagtagtttagtggctagattcacacacattatgtgt--agaaaagtggataattcagagttcgaaccctgaccgctgcacaaattatctctgatagcta 42445774  T
Q  213 ccaactaagttacacttac 231  Q
    |||| ||| ||||||||||    
T  42445773 ccaattaaattacacttac 42445755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 123 - 227
Target Start/End: Complemental strand, 28300194 - 28300092
Alignment:
Q  123 gtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctaccaactaagt 222  Q
    ||||||||||||||||| ||||||| ||||||  | |||||||| |||||||||||||||| |||||||||||||||||  || |||||||||||| ||     
T  28300194 gtggctagattcacacacattatgtatggaga--agtggggaatccggggttcgaaccccggcccctgcacaaattatcattggtagctaccaactgagc 28300097  T
Q  223 tacac 227  Q
    |||||    
T  28300096 tacac 28300092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 231
Target Start/End: Complemental strand, 12959824 - 12959708
Alignment:
Q  113 aagtagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagcta 212  Q
    |||||| || ||||||||||||||||| ||||| || | | |  | ||||||||  |||||||||||||| |||||||||||| ||||| ||||||||||    
T  12959824 aagtagcttcgtggctagattcacacacattatatgcgaata--agtggggaatctggggttcgaaccccaacccctgcacaagttatccctgatagcta 12959727  T
Q  213 ccaactaagttacacttac 231  Q
    |||||| || |||||||||    
T  12959726 ccaactgagctacacttac 12959708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 121 - 200
Target Start/End: Complemental strand, 15837248 - 15837171
Alignment:
Q  121 tagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattat 200  Q
    |||||||| |||||||||| |||||||||||| |  |||||||||| | | |||||||||||||||||||||||||||||    
T  15837248 tagtggctggattcacacacattatgtgtggaaa--aatggggaatccagagttcgaaccccgacccctgcacaaattat 15837171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 231
Target Start/End: Original strand, 13147735 - 13147850
Alignment:
Q  113 aagtagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagcta 212  Q
    ||||||| ||||||||||||||||||| |||||||||| |||  | || | |||| |||||||||||  ||   | ||||||||||||| ||| ||||||    
T  13147735 aagtagtctagtggctagattcacacacattatgtgtgaaga--agtgtgaaatttggggttcgaacttcggttc-tgcacaaattatcactggtagcta 13147831  T
Q  213 ccaactaagttacacttac 231  Q
    |||||| ||||||||||||    
T  13147832 ccaactgagttacacttac 13147850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 200
Target Start/End: Complemental strand, 40393386 - 40393352
Alignment:
Q  166 ttcggggttcgaaccccgacccctgcacaaattat 200  Q
    ||||||||||||||||||||||||||| |||||||    
T  40393386 ttcggggttcgaaccccgacccctgcataaattat 40393352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 154
Target Start/End: Original strand, 19756427 - 19756460
Alignment:
Q  121 tagtggctagattcacacatattatgtgtggaga 154  Q
    ||||||||||||||||||| ||||||||||||||    
T  19756427 tagtggctagattcacacacattatgtgtggaga 19756460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 24182628 - 24182668
Alignment:
Q  114 agtagtttagtggctagattcacacatattatgtgtggaga 154  Q
    ||||| |||||| ||||||||||| ||||||||||||||||    
T  24182628 agtagcttagtgactagattcacagatattatgtgtggaga 24182668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 44923317 - 44923353
Alignment:
Q  156 aaatggggaattcggggttcgaaccccgacccctgca 192  Q
    ||||||||| | |||||||||||||||||||||||||    
T  44923317 aaatggggagtccggggttcgaaccccgacccctgca 44923353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 113 - 231
Target Start/End: Original strand, 38745284 - 38745400
Alignment:
Q  113 aagtagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagcta 212  Q
    ||||||| ||||||||||||||||||| ||| ||||||||||  | |||||||||||||||||||| |||||||||||||||||||||| ||| || | |    
T  38745284 aagtagtctagtggctagattcacacacattttgtgtggaga--agtggggaattcggggttcgaatcccgacccctgcacaaattatccctggtaacca 38745381  T
Q  213 ccaactaagttacacttac 231  Q
    ||||||||| |||| ||||    
T  38745382 ccaactaagctacatttac 38745400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 121 - 201
Target Start/End: Original strand, 41259952 - 41260030
Alignment:
Q  121 tagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatc 201  Q
    ||||||||||||||||||| ||||||||||||||  | |||||||||||||| |||||||||| ||||| |||||||||||    
T  41259952 tagtggctagattcacacacattatgtgtggaga--agtggggaattcgggggtcgaaccccggcccctacacaaattatc 41260030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 113 - 231
Target Start/End: Original strand, 21892514 - 21892629
Alignment:
Q  113 aagtagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagcta 212  Q
    |||||||||||  |||||||||||||||| || |||||||||  | ||||||||| ||| |||||||||||| |||| || |||||||||||| ||| ||    
T  21892514 aagtagtttagcagctagattcacacataataagtgtggaga--agtggggaatttggg-ttcgaaccccgatccctccataaattatctctggtagtta 21892610  T
Q  213 ccaactaagttacacttac 231  Q
     ||||| || |||||||||    
T  21892611 tcaactgagctacacttac 21892629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 121 - 200
Target Start/End: Complemental strand, 32594670 - 32594596
Alignment:
Q  121 tagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattat 200  Q
    ||||||||||||||||||||||||||| |||||     |||| ||||||||||||||||||||||| || ||||||||||    
T  32594670 tagtggctagattcacacatattatgtatggag-----tgggaaattcggggttcgaaccccgaccactacacaaattat 32594596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 218
Target Start/End: Original strand, 9737575 - 9737670
Alignment:
Q  121 tagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctaccaact 218  Q
    |||||| || ||||||||| |||||||||  |||||||| |  |||||| ||||||||||| |||||||||||| | |||||||| ||||||||||||    
T  9737575 tagtggttatattcacacacattatgtgt--agagaaatagaaaattcgaggttcgaaccctgacccctgcacataatatctctggtagctaccaact 9737670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 116 - 216
Target Start/End: Original strand, 36786566 - 36786666
Alignment:
Q  116 tagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaa-ccccgacccctgcacaaattatctctgatagctacc 214  Q
    ||||| ||||||||||||||||||||||||||||||||| |  |||||||| || |||||||| |||| |||||| || |||||||| ||  ||||||||    
T  36786566 tagttcagtggctagattcacacatattatgtgtggaga-agttggggaatccgaggttcgaacccccaacccctacaaaaattatccctattagctacc 36786664  T
Q  215 aa 216  Q
    ||    
T  36786665 aa 36786666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 230
Target Start/End: Complemental strand, 33440090 - 33439978
Alignment:
Q  116 tagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctacca 215  Q
    |||| |||||| |||||||||||| |||||||||| | ||   |||  |||||||  ||| ||||||||||||| |||||||||| ||||||||||||||    
T  33440090 tagtctagtggttagattcacacacattatgtgtgaaaagg--tggaaaattcggaattcaaaccccgacccctacacaaattatttctgatagctacca 33439993  T
Q  216 actaagttacactta 230  Q
    | | || ||||||||    
T  33439992 agtgagctacactta 33439978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 231
Target Start/End: Original strand, 51829548 - 51829663
Alignment:
Q  113 aagtagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagcta 212  Q
    ||||||| ||||||||||||||||| | ||||||||||  ||||| || |||||  ||||||||||| ||  | ||||||||||| ||| ||| ||||||    
T  51829548 aagtagtatagtggctagattcacatacattatgtgtg--gagaagtgaggaatctggggttcgaacaccagctcctgcacaaatgatc-ctggtagcta 51829644  T
Q  213 ccaactaagttacacttac 231  Q
    |||||| || |||||||||    
T  51829645 ccaactgagctacacttac 51829663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 237
Target Start/End: Original strand, 21177040 - 21177147
Alignment:
Q  127 ctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctaccaactaagttaca 226  Q
    ||||||| ||||| ||||||||||||||  | ||||||||||| |||||||||   ||||| || ||||||| |||||| |||||||||||| || || |    
T  21177040 ctagatttacacacattatgtgtggaga--agtggggaattcgaggttcgaactttgaccc-tgtacaaattgtctctggtagctaccaactgaggtata 21177136  T
Q  227 cttactggatc 237  Q
    ||||| |||||    
T  21177137 cttacgggatc 21177147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 231
Target Start/End: Complemental strand, 54240721 - 54240605
Alignment:
Q  113 aagtagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagcta 212  Q
    ||||||| |||||| |||||||||||| |||||| |||  ||||| |||  ||| || |||||||||||||||||||||||| ||| ||  || |||||     
T  54240721 aagtagtctagtggttagattcacacacattatgcgtg--gagaagtggaaaatccgaggttcgaaccccgacccctgcacatattgtccttggtagctg 54240624  T
Q  213 ccaactaagttacacttac 231  Q
    |||||| || |||| ||||    
T  54240623 ccaactgagctacatttac 54240605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 231
Target Start/End: Complemental strand, 17002996 - 17002900
Alignment:
Q  130 gattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctaccaactaagttacactt 229  Q
    |||||||||| ||||||||||||||  | |||||||| ||   ||||||||||  |||||| |||||||||| ||| |||||||||||| || ||| |||    
T  17002996 gattcacacacattatgtgtggaga--agtggggaatccg---ttcgaaccccagcccctgtacaaattatccctggtagctaccaactgagctacgctt 17002902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 231
Target Start/End: Complemental strand, 55009640 - 55009523
Alignment:
Q  112 gaagtagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagct 211  Q
    |||||||| ||||| |  |||||||||| ||||||| ||||||  | || | ||| ||||||||||||||||  | || ||||||||||| || ||||||    
T  55009640 gaagtagtctagtgacacgattcacacacattatgtatggaga--agtgagaaatccggggttcgaaccccggtctctacacaaattatccctaatagct 55009543  T
Q  212 accaactaagttacacttac 231  Q
    ||||| | || |||||||||    
T  55009542 accaattgagctacacttac 55009523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 154
Target Start/End: Original strand, 11988925 - 11988963
Alignment:
Q  116 tagtttagtggctagattcacacatattatgtgtggaga 154  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  11988925 tagtctagtggctagattcacacacattatgtgtggaga 11988963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 34875652 - 34875729
Alignment:
Q  154 agaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctaccaactaagttacacttac 231  Q
    |||| ||| ||||| |||||||||||  || || ||||| | ||||||| |||||| |||||||| ||||||||||||    
T  34875652 agaagtggagaatttggggttcgaacttcggcctctgcaaatattatctttgatagttaccaactgagttacacttac 34875729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 218
Target Start/End: Complemental strand, 49285008 - 49284975
Alignment:
Q  185 cccctgcacaaattatctctgatagctaccaact 218  Q
    ||||||||||||||||||||| ||||||||||||    
T  49285008 cccctgcacaaattatctctggtagctaccaact 49284975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 113 - 231
Target Start/End: Original strand, 9667222 - 9667338
Alignment:
Q  113 aagtagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagcta 212  Q
    ||||||| |||||||| |||||||||| ||||||| ||||||  | |||| |||| ||||||||||| ||  ||||| ||||||||||||||||||||||    
T  9667222 aagtagtctagtggctggattcacacacattatgtatggaga--agtgggaaatttggggttcgaactccagcccctacacaaattatctctgatagcta 9667319  T
Q  213 ccaactaagttacacttac 231  Q
    |||||| || |||||||||    
T  9667320 ccaactgagctacacttac 9667338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 121 - 230
Target Start/End: Original strand, 23198524 - 23198630
Alignment:
Q  121 tagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctaccaactaa 220  Q
    ||||||||||||| ||||| ||||||||||||||  | |||||||| ||||||| ||||||| ||||||||||||||||||  ||||||||| ||||| |    
T  23198524 tagtggctagatttacacacattatgtgtggaga--agtggggaat-cggggtttgaaccccaacccctgcacaaattatccttgatagctatcaactga 23198620  T
Q  221 gttacactta 230  Q
    | ||||||||    
T  23198621 gctacactta 23198630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 121 - 229
Target Start/End: Complemental strand, 23982124 - 23982018
Alignment:
Q  121 tagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctaccaactaa 220  Q
    ||||||||||||||||||| ||||||||   |||||||||| |||| ||| |||||||| |  ||| |||||||||||||| ||| |||||||||||| |    
T  23982124 tagtggctagattcacacacattatgtgc--agagaaatggagaatccggagttcgaactctaacctctgcacaaattatccctggtagctaccaactga 23982027  T
Q  221 gttacactt 229  Q
    |||| ||||    
T  23982026 gttatactt 23982018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 113 - 231
Target Start/End: Original strand, 27227255 - 27227371
Alignment:
Q  113 aagtagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagcta 212  Q
    ||||||| ||||||||||||||| ||| ||||||||||  ||||| ||||||||  ||| |||||| | | ||||||  |||||||||||||| ||| ||    
T  27227255 aagtagtctagtggctagattcaaacacattatgtgtg--gagaagtggggaatctgggattcgaaacacaacccctatacaaattatctctggtaggta 27227352  T
Q  213 ccaactaagttacacttac 231  Q
    |||||| || |||||||||    
T  27227353 ccaactgagctacacttac 27227371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 235
Target Start/End: Original strand, 36877001 - 36877083
Alignment:
Q  153 gagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctaccaactaagttacacttactgga 235  Q
    ||||| |||| ||| ||||||||||||||||||||||||||||||||||  || |||||||||||| ||   |||||||||||    
T  36877001 gagaagtgggaaatccggggttcgaaccccgacccctgcacaaattatccatgttagctaccaactgagcatcacttactgga 36877083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 231
Target Start/End: Complemental strand, 27744692 - 27744580
Alignment:
Q  116 tagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctacca 215  Q
    ||||||||||| || ||||||||| ||||||||||||||  | |||||||| ||  |||||||| |  |||| |||||||||||||||||||||||| ||    
T  27744692 tagtttagtggttaaattcacacacattatgtgtggaga--agtggggaatccgatgttcgaactctaaccc-tgcacaaattatctctgatagctatca 27744596  T
Q  216 actaagttacacttac 231  Q
    |||  | |||||||||    
T  27744595 actgcgctacacttac 27744580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 121 - 224
Target Start/End: Complemental strand, 37307768 - 37307667
Alignment:
Q  121 tagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctaccaactaa 220  Q
    ||||||||||||||| ||| ||||| ||||||||  | |||||||| ||| |||||||||||||||||  |||| | |||||||  |||||| |||||||    
T  37307768 tagtggctagattcaaacacattatttgtggaga--agtggggaatccggagttcgaaccccgaccccgacacataatatctcttgtagctatcaactaa 37307671  T
Q  221 gtta 224  Q
    ||||    
T  37307670 gtta 37307667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 231
Target Start/End: Complemental strand, 32958606 - 32958490
Alignment:
Q  113 aagtagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagcta 212  Q
    ||||||| || |||||||||||||||| |||| ||||||| |  | ||| |||| |||||||||||| | ||| |||||||||||||| | || ||||||    
T  32958606 aagtagtgtaatggctagattcacacacattaagtgtggata--agtggagaatccggggttcgaactctgactcctgcacaaattatttttggtagcta 32958509  T
Q  213 ccaactaagttacacttac 231  Q
    |||||  || |||||||||    
T  32958508 ccaaccgagctacacttac 32958490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 47684478 - 47684564
Alignment:
Q  113 aagtagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatc 201  Q
    ||||||| || |||||||||||||||| ||||||| ||  ||||| | || ||| |||||||| |||||| ||||||||||||||||||    
T  47684478 aagtagtctattggctagattcacacacattatgtatg--gagaagtaggaaatccggggttcaaaccccaacccctgcacaaattatc 47684564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 38524880 - 38524940
Alignment:
Q  171 ggttcgaaccccgacccctgcacaaattatctctgatagctaccaactaagttacacttac 231  Q
    |||||||| |||||| |||||||||||||| |||| || |||||||||||| |||||||||    
T  38524880 ggttcgaagcccgactcctgcacaaattatatctggtaactaccaactaagctacacttac 38524940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 121 - 228
Target Start/End: Complemental strand, 41780568 - 41780464
Alignment:
Q  121 tagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctaccaactaa 220  Q
    |||||| |||||||||||| |||||||||| |||  | || |||||||  | ||||||||| |||||| ||||||||||||  ||||||||||||||  |    
T  41780568 tagtggttagattcacacacattatgtgtgtaga--agtgaggaattcttg-ttcgaaccctgaccccggcacaaattatccatgatagctaccaaccga 41780472  T
Q  221 gttacact 228  Q
    ||||||||    
T  41780471 gttacact 41780464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 121 - 204
Target Start/End: Original strand, 45725122 - 45725203
Alignment:
Q  121 tagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctct 204  Q
    ||||||||||||| ||| | |||||||||  |||||| || | |||||| | |||||| |||||||||||||||||||||||||    
T  45725122 tagtggctagatttacatacattatgtgt--agagaagtgagtaattcgagattcgaatcccgacccctgcacaaattatctct 45725203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 216
Target Start/End: Complemental strand, 13054699 - 13054611
Alignment:
Q  126 gctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctaccaa 216  Q
    ||||||||| |||| ||||||||||||||  | |||| |||  ||||||||||||||| |||||||||| ||| || ||| ||||||||||    
T  13054699 gctagattcgcacacattatgtgtggaga--agtgggaaatctggggttcgaaccccggcccctgcacatattttccctggtagctaccaa 13054611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 218
Target Start/End: Complemental strand, 25091277 - 25091175
Alignment:
Q  113 aagtagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagcta 212  Q
    ||||||| ||||||||||||||||||| |||||||||| |||   |  |  |||  || ||| ||||| |||||||||||||||||||| ||| ||||||    
T  25091277 aagtagtctagtggctagattcacacacattatgtgtgaaga---agtgaaaatctggagtttgaacctcgacccctgcacaaattatccctggtagcta 25091181  T
Q  213 ccaact 218  Q
    ||||||    
T  25091180 ccaact 25091175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 231
Target Start/End: Original strand, 44165878 - 44165994
Alignment:
Q  113 aagtagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagcta 212  Q
    |||||| |||||||| ||||||||||| |||||||||||||| |   |||||||||  |||||||| ||||| |  |||| |||||||| ||| ||||||    
T  44165878 aagtaggttagtggc-agattcacacacattatgtgtggaga-agtgggggaattcaaggttcgaatcccgatctttgcataaattatccctggtagcta 44165975  T
Q  213 ccaactaagttacacttac 231  Q
    |||||| || | |||||||    
T  44165976 ccaactgagctgcacttac 44165994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 7683495 - 7683454
Alignment:
Q  113 aagtagtttagtggctagattcacacatattatgtgtggaga 154  Q
    |||||||||||||| |||||||||||| ||||||||||||||    
T  7683495 aagtagtttagtggttagattcacacacattatgtgtggaga 7683454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 154
Target Start/End: Original strand, 39584252 - 39584286
Alignment:
Q  120 ttagtggctagattcacacatattatgtgtggaga 154  Q
    |||||||||||| ||||||||||||||||||||||    
T  39584252 ttagtggctagactcacacatattatgtgtggaga 39584286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 154
Target Start/End: Original strand, 40097907 - 40097948
Alignment:
Q  113 aagtagtttagtggctagattcacacatattatgtgtggaga 154  Q
    ||||||||||||| ||| ||||||||| ||||||||||||||    
T  40097907 aagtagtttagtgtctaaattcacacacattatgtgtggaga 40097948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 30746009 - 30746068
Alignment:
Q  170 gggttcgaaccccgacccctgcacaaattatctctgatagctaccaactaagttacactta 230  Q
    |||||| ||||||| ||||||||||||||||  ||||||| |||||||| ||||| |||||    
T  30746009 gggttcaaaccccg-cccctgcacaaattattcctgatagttaccaactgagttatactta 30746068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 200
Target Start/End: Original strand, 45284823 - 45284855
Alignment:
Q  168 cggggttcgaaccccgacccctgcacaaattat 200  Q
    ||||||||||||||||||||||||| |||||||    
T  45284823 cggggttcgaaccccgacccctgcataaattat 45284855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 45664737 - 45664673
Alignment:
Q  172 gttcgaaccccgacccctgcacaaattatctctgatagctaccaactaagttacacttactggat 236  Q
    ||||||||||| |||||| || | |||||||||  |||||||||||| || ||||||||| ||||    
T  45664737 gttcgaaccccaacccctacaaacattatctctagtagctaccaactgagctacacttacgggat 45664673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 113 - 231
Target Start/End: Original strand, 34319806 - 34319922
Alignment:
Q  113 aagtagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagcta 212  Q
    ||||||| ||||||||||||||||||| |||||||||  |||||| || ||||| | ||||| ||| || | ||||||||||||||||| ||||||||||    
T  34319806 aagtagtctagtggctagattcacacacattatgtgt--agagaagtgaggaatccagggttagaatcctggcccctgcacaaattatccctgatagcta 34319903  T
Q  213 ccaactaagttacacttac 231  Q
    |||||| || |||||||||    
T  34319904 ccaactgaggtacacttac 34319922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 116 - 219
Target Start/End: Original strand, 14368410 - 14368511
Alignment:
Q  116 tagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctacca 215  Q
    |||||||||||||||||||||||| ||||||||||  ||||| |||||||| || |||||||||||| ||||||  | ||||||||  || |||||||||    
T  14368410 tagtttagtggctagattcacacacattatgtgtg--gagaagtggggaatccgtggttcgaaccccaacccctatataaattatccatggtagctacca 14368507  T
Q  216 acta 219  Q
    ||||    
T  14368508 acta 14368511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 121 - 218
Target Start/End: Complemental strand, 8915673 - 8915578
Alignment:
Q  121 tagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctaccaact 218  Q
    ||||||||||||||||||| ||||| | ||||||  | |||||||| |||||| |||||||| |||| | |||||||||| |||||||||||||||||    
T  8915673 tagtggctagattcacacacattatttatggaga--agtggggaatccggggtacgaaccccaacccattcacaaattatttctgatagctaccaact 8915578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 113 - 218
Target Start/End: Complemental strand, 37123673 - 37123570
Alignment:
Q  113 aagtagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagcta 212  Q
    ||||||| ||||||||||||||||||| ||||||||||  ||||| || | |||| |||||||||| ||||| |||| ||||||||||| |||||| |||    
T  37123673 aagtagtctagtggctagattcacacacattatgtgtg--gagaagtgagaaatttggggttcgaatcccgaaccctacacaaattatccctgataacta 37123576  T
Q  213 ccaact 218  Q
    | ||||    
T  37123575 ctaact 37123570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 231
Target Start/End: Original strand, 31068887 - 31069000
Alignment:
Q  116 tagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctacca 215  Q
    |||| |||||| |||||||||||| |||| |||||||||  | |||||||| ||| |||| ||| ||||||||| |||||||||||  || |||||||||    
T  31068887 tagtctagtggttagattcacacacattaagtgtggaga--agtggggaatccggagttcaaactccgacccctacacaaattatcaatgttagctacca 31068984  T
Q  216 actaagttacacttac 231  Q
    ||| || |||||||||    
T  31068985 actgagctacacttac 31069000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 123 - 231
Target Start/End: Original strand, 9198932 - 9199037
Alignment:
Q  123 gtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgaccc-ctgcacaaattatctctgatagctaccaactaag 221  Q
    ||||||| ||||||||||  ||||||||||||  | |||| |||||| ||||||||||||  ||| |||||||||||||||||| |||||||||||| ||    
T  9198932 gtggctaaattcacacat--tatgtgtggaga--agtgggaaattcgaggttcgaaccccagcccgctgcacaaattatctctggtagctaccaactgag 9199027  T
Q  222 ttacacttac 231  Q
     |||||||||    
T  9199028 ctacacttac 9199037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 3108229 - 3108168
Alignment:
Q  170 gggttcgaaccccgacccctgcacaaattatctctgatagctaccaactaagttacacttac 231  Q
    |||||||||| |||| |||||||| |||||||||||||||||||||||| | ||| ||||||    
T  3108229 gggttcgaacaccgatccctgcaccaattatctctgatagctaccaactgaattatacttac 3108168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 198
Target Start/End: Complemental strand, 44287897 - 44287825
Alignment:
Q  124 tggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaatt 198  Q
    |||||||||||||||| ||||||||||  ||||| |||||||| ||| ||||||| ||| ||| |||||||||||    
T  44287897 tggctagattcacacacattatgtgtg--gagaagtggggaatccggagttcgaatcccaacctctgcacaaatt 44287825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 231
Target Start/End: Original strand, 9294131 - 9294228
Alignment:
Q  131 attcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctaccaactaagttacactta 230  Q
    ||||||||| ||||||||||||||  | ||| |||||| || ||| ||| |||||||||||| |||||||||||||| ||||| |||| |  ||||||||    
T  9294131 attcacacacattatgtgtggaga--agtggtgaattcagg-ttcaaactccgacccctgcagaaattatctctgatggctacaaactgaactacactta 9294227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 20157021 - 20156980
Alignment:
Q  113 aagtagtttagtggctagattcacacatattatgtgtggaga 154  Q
    ||||||||||||| ||||||||||||| ||||||||||||||    
T  20157021 aagtagtttagtgtctagattcacacacattatgtgtggaga 20156980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 116 - 225
Target Start/End: Complemental strand, 13874554 - 13874446
Alignment:
Q  116 tagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgac-ccctgcacaaattatctctgatagctacc 214  Q
    ||||||||||| || ||||| ||| || || ||||||||  |||| ||||||||  ||||||||||| |  ||||||||| | | |||||||||||||||    
T  13874554 tagtttagtggttaaattcatacacataatatgtggaga--aatgaggaattcgatgttcgaacccccaatccctgcacataatgtctctgatagctacc 13874457  T
Q  215 aactaagttac 225  Q
    |||| ||||||    
T  13874456 aactgagttac 13874446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 116 - 225
Target Start/End: Complemental strand, 14014679 - 14014571
Alignment:
Q  116 tagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgac-ccctgcacaaattatctctgatagctacc 214  Q
    ||||||||||| || ||||| ||| || || ||||||||  |||| ||||||||  ||||||||||| |  ||||||||| | | |||||||||||||||    
T  14014679 tagtttagtggttaaattcatacacataatatgtggaga--aatgaggaattcgatgttcgaacccccaatccctgcacataatgtctctgatagctacc 14014582  T
Q  215 aactaagttac 225  Q
    |||| ||||||    
T  14014581 aactgagttac 14014571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 231
Target Start/End: Complemental strand, 34028206 - 34028098
Alignment:
Q  113 aagtagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagcta 212  Q
    |||||||||| ||| |||||||||||| ||||||||||||          |||| ||| |||| ||| |||||||||||| |||||||| ||| ||||||    
T  34028206 aagtagtttaatggttagattcacacacattatgtgtgga----------gaatccggagttcaaactccgacccctgcaaaaattatccctggtagcta 34028117  T
Q  213 ccaactaagttacacttac 231  Q
    | |||| || |||||||||    
T  34028116 ctaactgagctacacttac 34028098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 221
Target Start/End: Original strand, 9932020 - 9932111
Alignment:
Q  128 tagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctaccaactaag 221  Q
    |||||||||||| ||||| ||||||||  | |||||||| |||||||||||  ||| || ||| |||||||||| ||  ||||||||| |||||    
T  9932020 tagattcacacacattatatgtggaga--agtggggaatccggggttcgaattccggccactgtacaaattatcccttgtagctaccacctaag 9932111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 32087372 - 32087442
Alignment:
Q  161 gggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctaccaactaagttacacttac 231  Q
    |||||||||| ||||||||||||| | || ||||||||||| ||| |||||| ||||| |  |||||||||    
T  32087372 gggaattcggagttcgaaccccgatctctacacaaattatccctggtagctatcaactgaactacacttac 32087442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 21297467 - 21297422
Alignment:
Q  153 gagaaatggggaattcggggttcgaaccccgacccctgcacaaatt 198  Q
    ||||| |||||||| || ||||||||||||| ||||||||||||||    
T  21297467 gagaagtggggaatccgaggttcgaaccccggcccctgcacaaatt 21297422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 200
Target Start/End: Complemental strand, 3596316 - 3596284
Alignment:
Q  168 cggggttcgaaccccgacccctgcacaaattat 200  Q
    ||||||||||||||||||||||||| |||||||    
T  3596316 cggggttcgaaccccgacccctgcataaattat 3596284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 33816404 - 33816444
Alignment:
Q  152 agagaaatggggaattcggggttcgaaccccgacccctgca 192  Q
    ||||||||||||  ||||||||||||| |||||||||||||    
T  33816404 agagaaatggggtgttcggggttcgaaacccgacccctgca 33816444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 120 - 230
Target Start/End: Complemental strand, 35997088 - 35996980
Alignment:
Q  120 ttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctaccaacta 219  Q
    |||||||||||| ||||||| |||||||||| |||  | ||| ||||||||  || ||||||| ||| |||||||||||||||||||||||||||||||     
T  35997088 ttagtggctagagtcacacacattatgtgtgaaga--agtggagaattcggaatttgaaccccaaccactgcacaaattatctctgatagctaccaactg 35996991  T
Q  220 agttacactta 230  Q
    || ||||||||    
T  35996990 agctacactta 35996980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 121 - 228
Target Start/End: Original strand, 8757273 - 8757378
Alignment:
Q  121 tagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctaccaactaa 220  Q
    |||||| |||||||||||| ||||||||||||||    |||||||| | |||||||||||||| |||||||||| | | |||||| ||||||||||||||    
T  8757273 tagtggttagattcacacacattatgtgtggagacg--tggggaatccagggttcgaaccccggcccctgcacataatgtctctggtagctaccaactaa 8757370  T
Q  221 gttacact 228  Q
    | ||||||    
T  8757371 gctacact 8757378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 154
Target Start/End: Original strand, 2661631 - 2661665
Alignment:
Q  120 ttagtggctagattcacacatattatgtgtggaga 154  Q
    |||||||||||||||||||||||||||||||||||    
T  2661631 ttagtggctagattcacacatattatgtgtggaga 2661665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 7550091 - 7550013
Alignment:
Q  153 gagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctaccaactaagttacacttac 231  Q
    ||||| |||||||| |||||||||||||||| |||||||| | | | |||||| |||||| ||||| || |||||||||    
T  7550091 gagaagtggggaatccggggttcgaaccccggcccctgcaaataatgtctctggtagctatcaactgagctacacttac 7550013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 50462183 - 50462233
Alignment:
Q  181 ccgacccctgcacaaattatctctgatagctaccaactaagttacacttac 231  Q
    ||||||||| |||||||||||| ||||| ||||||||| ||||||||||||    
T  50462183 ccgacccctacacaaattatctttgatatctaccaactgagttacacttac 50462233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 48977437 - 48977505
Alignment:
Q  163 gaattcggggttcgaaccccgacccctgcacaaattatctctgatagctaccaactaagttacacttac 231  Q
    ||||| |||||||||||||||||| | |||||||||||||  ||||| |||||| |||| |||| ||||    
T  48977437 gaatttggggttcgaaccccgaccaccgcacaaattatcttggatagataccaattaagctacagttac 48977505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 1927654 - 1927613
Alignment:
Q  113 aagtagtttagtggctagattcacacatattatgtgtggaga 154  Q
    ||||||||| ||| ||||||||||||| ||||||||||||||    
T  1927654 aagtagtttggtgactagattcacacacattatgtgtggaga 1927613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 200
Target Start/End: Complemental strand, 10632760 - 10632728
Alignment:
Q  168 cggggttcgaaccccgacccctgcacaaattat 200  Q
    ||||||||||||||||||||||||| |||||||    
T  10632760 cggggttcgaaccccgacccctgcataaattat 10632728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 14396521 - 14396481
Alignment:
Q  152 agagaaatggggaattcggggttcgaaccccgacccctgca 192  Q
    |||||||||| |  |||||||||||||||||||||||||||    
T  14396521 agagaaatggagtgttcggggttcgaaccccgacccctgca 14396481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 113 - 218
Target Start/End: Original strand, 7326322 - 7326425
Alignment:
Q  113 aagtagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagcta 212  Q
    ||||||| ||||||||| ||||||||| ||||||||||||||  | ||||||||   ||||||||| |||||||||||| ||||||||| ||| ||||||    
T  7326322 aagtagtctagtggctaaattcacacacattatgtgtggaga--agtggggaatctagggttcgaaacccgacccctgctcaaattatccctggtagcta 7326419  T
Q  213 ccaact 218  Q
    ||||||    
T  7326420 ccaact 7326425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 121 - 231
Target Start/End: Original strand, 6922633 - 6922741
Alignment:
Q  121 tagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctaccaactaa 220  Q
    ||||||||||||||||||| ||||| ||||||||  | ||||||||  || ||| |||||||||||||||||||||||||   || |||||||||||| |    
T  6922633 tagtggctagattcacacacattatatgtggaga--agtggggaatctggagtttgaaccccgacccctgcacaaattattcatggtagctaccaactga 6922730  T
Q  221 gttacacttac 231  Q
      |||||||||    
T  6922731 actacacttac 6922741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 121 - 231
Target Start/End: Complemental strand, 7339604 - 7339497
Alignment:
Q  121 tagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctaccaactaa 220  Q
    ||||||||||||||||||| |||||||||| |||  | ||  ||||| ||||||| ||  | |||||||||| ||||||| ||||||||| |||||||||    
T  7339604 tagtggctagattcacacacattatgtgtgaaga--agtgaagaatt-ggggttcaaattctgacccctgcagaaattatttctgatagccaccaactaa 7339508  T
Q  221 gttacacttac 231  Q
    |||||||||||    
T  7339507 gttacacttac 7339497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 117 - 231
Target Start/End: Complemental strand, 12606763 - 12606651
Alignment:
Q  117 agtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctaccaa 216  Q
    ||||||||||||||||||||||| ||||| |||| |||  | ||||||||  |||||||||||| |||  ||| ||||||||||| ||  ||||||||||    
T  12606763 agtttagtggctagattcacacacattatatgtgaaga--agtggggaatctggggttcgaacctcgattcctacacaaattatccctagtagctaccaa 12606666  T
Q  217 ctaagttacacttac 231  Q
    || || |||||||||    
T  12606665 ctgagctacacttac 12606651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 121 - 231
Target Start/End: Complemental strand, 5925690 - 5925580
Alignment:
Q  121 tagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgata--gctaccaact 218  Q
    ||||||||||||||||||| ||||||||||   |||| |||||||| | || || |||||||  ||||||||||||| ||||||| ||  || |||||||    
T  5925690 tagtggctagattcacacacattatgtgtg--aagaagtggggaatccaggatttgaaccccagcccctgcacaaatgatctctggtagcgccaccaact 5925593  T
Q  219 aagttacacttac 231  Q
     ||||||||||||    
T  5925592 gagttacacttac 5925580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 121 - 218
Target Start/End: Complemental strand, 8177020 - 8176925
Alignment:
Q  121 tagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctaccaact 218  Q
    ||||||||| ||||| ||| ||||||||||||||  | ||| ||||||| ||||| |||  ||| ||||||| ||||||||||||||| |||||||||    
T  8177020 tagtggctaaattcatacacattatgtgtggaga--agtggagaattcgaggttcaaacatcgatccctgcataaattatctctgataactaccaact 8176925  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 231
Target Start/End: Original strand, 20599421 - 20599499
Alignment:
Q  153 gagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctaccaactaagttacacttac 231  Q
    ||||| |||||||| |||||||| ||||||||||| |||||| | |||| ||| |||||||||||| || |||||||||    
T  20599421 gagaagtggggaatccggggttcaaaccccgacccttgcacataatatccctggtagctaccaactgagctacacttac 20599499  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 11063320 - 11063357
Alignment:
Q  194 aaattatctctgatagctaccaactaagttacacttac 231  Q
    |||||||||||||||||| |||||| ||||||||||||    
T  11063320 aaattatctctgatagctgccaactgagttacacttac 11063357  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 12654488 - 12654525
Alignment:
Q  113 aagtagtttagtggctagattcacacatattatgtgtg 150  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  12654488 aagtagtttattggctagattcacacacattatgtgtg 12654525  T

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Target: scaffold0040 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 231
Target Start/End: Original strand, 58639 - 58750
Alignment:
Q  116 tagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatctctgatagctacca 215  Q
    |||| ||||||||||| |||||||||| |||||||  ||||| |||| ||| ||||||||||||  || |||  |||||| || ||| ||||||||||||    
T  58639 tagtctagtggctagaatcacacatataatgtgtg--gagaagtgggaaatccggggttcgaacttcggccc--gcacaatttttctttgatagctacca 58734  T
Q  216 actaagttacacttac 231  Q
    ||| || |||| ||||    
T  58735 actgagctacatttac 58750  T

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Target: scaffold0291 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 7212 - 7298
Alignment:
Q  113 aagtagtttagtggctagattcacacatattatgtgtggagagaaatggggaattcggggttcgaaccccgacccctgcacaaattatc 201  Q
    ||||| |||| |||||| ||| ||||||||||||| |  |||||| ||| |||||||  |||||| ||| ||||||| |||||||||||    
T  7212 aagtaatttattggctaaatttacacatattatgtat--agagaagtggagaattcgatgttcgatccctgacccctacacaaattatc 7298  T

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Target: scaffold0178 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 9703 - 9753
Alignment:
Q  122 agtggctagattcacacatattatgtgtggagagaaatggggaattcggggtt 174  Q
    |||||||||||||||||| ||||||||||  ||||| |||||||| |||||||    
T  9703 agtggctagattcacacacattatgtgtg--gagaagtggggaatccggggtt 9753  T

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