View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_74 (Length: 357)
Name: NF17277_low_74
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_74 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 10 - 338
Target Start/End: Complemental strand, 28091992 - 28091664
Alignment:
| Q |
10 |
agatgaaggccacaatacgagcaactataccgtaaaaaatgaggacagctagacaaataggccaatcattgacattataaccgctattcatcagtgaact |
109 |
Q |
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| T |
28091992 |
agatgaaggccacaatacgagcaactataccgtaaaaaatgaggacagctagacaaataggccaatcattgacattataaccgctattcatcagtgaact |
28091893 |
T |
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| Q |
110 |
acaacgagttatcagccatacgccggtgtacctgaagnnnnnnntattagattgaaatagtattatatagctagattagtaaaatgcaattatatcctaa |
209 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28091892 |
acaacgagttatcagccatacgccggtgtacctgaagaaaaaaatattagattgaaatagtattatatagctagattagtaaaatgcaattatatcctaa |
28091793 |
T |
|
| Q |
210 |
catgagcaatgtattttcaagtttatgtttacattttataacagttgtaagatattgtcttttcctaagttgggtatattattacccaaaaatatgttaa |
309 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28091792 |
catgagcaatgtattttcaagtttatatttacattttataacagttgtaagatattgtcttttcctaagttgggtatattattacccaaaaatatgttaa |
28091693 |
T |
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| Q |
310 |
gcaaggtccaaaagtagtagtgaggggtt |
338 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
28091692 |
gcaaggtccaaaagtagtagtgaggggtt |
28091664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 12 - 142
Target Start/End: Original strand, 41039892 - 41040022
Alignment:
| Q |
12 |
atgaaggccacaatacgagcaactataccgtaaaaaatgaggacagctagacaaataggccaatcattgacattataaccgctattcatcagtgaactac |
111 |
Q |
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|||||||| ||||| || |||| ||| || | |||||||| ||| ||||||||| |||| ||||||| || |||||| || |||||||||||||||| |
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| T |
41039892 |
atgaaggctacaattcgggcaattattccattcaaaatgagtacaagtagacaaatgagccattcattgagatcataaccactgttcatcagtgaactac |
41039991 |
T |
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| Q |
112 |
aacgagttatcagccatacgccggtgtacct |
142 |
Q |
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| T |
41039992 |
aacgagttatcaaccatactccagtgtacct |
41040022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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