View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17277_low_76 (Length: 354)

Name: NF17277_low_76
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17277_low_76
NF17277_low_76
[»] chr3 (16 HSPs)
chr3 (1-154)||(6139208-6139361)
chr3 (8-121)||(13282744-13282857)
chr3 (220-344)||(6139004-6139142)
chr3 (8-125)||(6165051-6165168)
chr3 (220-344)||(6164321-6164457)
chr3 (220-345)||(13282953-13283095)
chr3 (21-138)||(6858586-6858703)
chr3 (22-138)||(6725827-6725943)
chr3 (22-130)||(6412531-6412639)
chr3 (298-344)||(6241896-6241942)
chr3 (81-138)||(6595065-6595122)
chr3 (25-138)||(7747588-7747701)
chr3 (298-341)||(6255127-6255170)
chr3 (298-344)||(6234110-6234156)
chr3 (3-45)||(6234331-6234373)
chr3 (103-138)||(6234298-6234333)
[»] scaffold0425 (1 HSPs)
scaffold0425 (20-138)||(15220-15338)


Alignment Details
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 6139361 - 6139208
Alignment:
Q  1 gattcttagagcaggttaaagatttattttcatatttcaacaaaggtgggagctacaaatgattggacataaataaatgaatattaacatcaacaataat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6139361 gattcttagagcaggttaaagatttattttcatatttcaacaaaggtgggagctacaaatgattggacataaattaatgaatattaacatcaacaataat 6139262  T
Q  101 acaagatggatatgttgttttacttctttgtaacacttcacaaatccagagaac 154  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  6139261 acaagatggataagttgttttacttctttgtaacacttcgcaaatccagagaac 6139208  T

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Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 13282744 - 13282857
Alignment:
Q  8 agagcaggttaaagatttattttcatatttcaacaaaggtgggagctacaaatgattggacataaataaatgaatattaacatcaacaataatacaagat 107  Q
    |||| |||||||| |||||||||||||||||||||||||||  ||||| |||||||||| || |||| ||||||||||||||||||||||||||| ||||    
T  13282744 agagaaggttaaatatttattttcatatttcaacaaaggtgaaagctaaaaatgattggtcagaaatgaatgaatattaacatcaacaataatactagat 13282843  T
Q  108 ggatatgttgtttt 121  Q
    ||||||||||||||    
T  13282844 ggatatgttgtttt 13282857  T

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Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 220 - 344
Target Start/End: Complemental strand, 6139142 - 6139004
Alignment:
Q  220 ccccatccatcttcctgtcttgttgattatttcacttcataaatcttgaaatctatggcctaatactgaaacaactca------------tgatcata-- 305  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||            ||||||||      
T  6139142 ccccatccatcttcctgtcttgttgattatttcaatttataaatcttgaaatctatggcctaataatgaaacaactcaagatatatgcattgatcatatc 6139043  T
Q  306 tctctctcgagccactttacgaaatccctttgacctatg 344  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6139042 tctctctcgagccactttacgaaatccctttgacctatg 6139004  T

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Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 6165168 - 6165051
Alignment:
Q  8 agagcaggttaaagatttattttcatatttcaacaaaggtgggagctacaaatgattggacataaataaatgaatattaacatcaacaataatacaagat 107  Q
    |||| ||||||||||||| |||||||||||||| |||||||||||||| |||| ||| ||||||||| |||||| ||||||||||| |||| ||||||||    
T  6165168 agagtaggttaaagatttgttttcatatttcaataaaggtgggagctaaaaattatttgacataaatgaatgaacattaacatcaataatagtacaagat 6165069  T
Q  108 ggatatgttgttttactt 125  Q
    ||||||  ||||||||||    
T  6165068 ggatataatgttttactt 6165051  T

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Target: chr3; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 220 - 344
Target Start/End: Complemental strand, 6164457 - 6164321
Alignment:
Q  220 ccccatccatcttcctgtcttgttgattatttcacttcataaatcttgaaatctatggcctaatactgaaacaactca------------tgatcatatc 307  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||            ||||||||||    
T  6164457 ccccatccatcctcctgtcttgttgattatttcacttcataaatcttgaaatcaatggcctaataatgaaacaactcaagatatatgcattgatcatatc 6164358  T
Q  308 tctctcgagccactttacgaaatccctttgacctatg 344  Q
    ||||| ||||||| ||||||||||||| |||| ||||    
T  6164357 tctcttgagccacattacgaaatccctctgacttatg 6164321  T

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Target: chr3; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 220 - 345
Target Start/End: Original strand, 13282953 - 13283095
Alignment:
Q  220 ccccatccatcttcctgtcttgttgatta-----tttcacttcataaatcttgaaatctatggcctaatactgaaacaactca------------tgatc 302  Q
    |||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||| | ||||||||||            |||||    
T  13282953 ccccatccatcttcctgtcttgttgattactccatttcacttcataaatcttgaaatctatggcctaataataaaacaactcaagatatatgcattgatc 13283052  T
Q  303 atatctctctcgagccactttacgaaatccctttgacctatgc 345  Q
    |||||||||||||||||||||||||||||||| |||| |||||    
T  13283053 atatctctctcgagccactttacgaaatccctctgacttatgc 13283095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 6858586 - 6858703
Alignment:
Q  21 gatttattttcatatttcaacaaaggtgggagctacaaatgattggacataaataaatgaatattaacatcaacaataatacaagatggatatgttgttt 120  Q
    |||| |||||||||||||||||||||||||||||| || | |||  ||| ||||||||  |||||||||| ||||| ||||||| | |||||||||||||    
T  6858586 gattaattttcatatttcaacaaaggtgggagctaaaatttattatacagaaataaattgatattaacattaacaacaatacaataaggatatgttgttt 6858685  T
Q  121 tacttctttgtaacactt 138  Q
    |||||||||| |||||||    
T  6858686 tacttctttgaaacactt 6858703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 6725827 - 6725943
Alignment:
Q  22 atttattttcatatttcaacaaaggtgggagctacaaatgattggacataaataaatgaatattaacatcaacaataatacaagatggatatgttgtttt 121  Q
    |||||||||||||||||||||||||||||||||| |||  |||| ||| |||| |||  |||| ||||| ||||| ||| ||||| ||||||||||||||    
T  6725827 atttattttcatatttcaacaaaggtgggagctaaaaaatattgtacagaaatgaattgatatgaacattaacaacaattcaagaaggatatgttgtttt 6725926  T
Q  122 acttctttgtaacactt 138  Q
    ||||||||| |||||||    
T  6725927 acttctttgaaacactt 6725943  T

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Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 130
Target Start/End: Original strand, 6412531 - 6412639
Alignment:
Q  22 atttattttcatatttcaacaaaggtgggagctacaaatgattggacataaataaatgaatattaacatcaacaataatacaagatggatatgttgtttt 121  Q
    |||||||||||||||||||| ||||||||||||| |||| ||||  || |||| |||  |||||||||| ||||| ||| ||||| |||||||||| |||    
T  6412531 atttattttcatatttcaacgaaggtgggagctaaaaattattgtgcagaaatgaattgatattaacattaacaacaattcaagaaggatatgttggttt 6412630  T
Q  122 acttctttg 130  Q
    |||||||||    
T  6412631 acttctttg 6412639  T

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Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 298 - 344
Target Start/End: Complemental strand, 6241942 - 6241896
Alignment:
Q  298 tgatcatatctctctcgagccactttacgaaatccctttgacctatg 344  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||    
T  6241942 tgatcatatctctctcgagccactttacggaatccctctgacctatg 6241896  T

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Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 6595065 - 6595122
Alignment:
Q  81 atattaacatcaacaataatacaagatggatatgttgttttacttctttgtaacactt 138  Q
    ||||||||||  |||| ||| ||||||||||||||||||||||||||||| |||||||    
T  6595065 atattaacattgacaacaattcaagatggatatgttgttttacttctttgaaacactt 6595122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 138
Target Start/End: Complemental strand, 7747701 - 7747588
Alignment:
Q  25 tattttcatatttcaacaaaggtgggagctacaaatgattggacataaataaatgaatattaacatcaacaataatacaagatggatatgttgttttact 124  Q
    |||||||| |||||||||||||||||||||| |  | |||| ||  |||| | |  |||||||||| ||||| ||||||||| || ||| || |||||||    
T  7747701 tattttcaaatttcaacaaaggtgggagctaaacgttattgaacggaaatgatttgatattaacattaacaacaatacaagaaggttatatttttttact 7747602  T
Q  125 tctttgtaacactt 138  Q
    |||||| |||||||    
T  7747601 tctttgaaacactt 7747588  T

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Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 298 - 341
Target Start/End: Complemental strand, 6255170 - 6255127
Alignment:
Q  298 tgatcatatctctctcgagccactttacgaaatccctttgacct 341  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||    
T  6255170 tgatcatatctctctcgagtcactttacgaaatccctctgacct 6255127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 344
Target Start/End: Complemental strand, 6234156 - 6234110
Alignment:
Q  298 tgatcatatctctctcgagccactttacgaaatccctttgacctatg 344  Q
    ||||||||| ||||||||| ||||||||||||||||| |||||||||    
T  6234156 tgatcatatatctctcgagacactttacgaaatccctctgacctatg 6234110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 6234373 - 6234331
Alignment:
Q  3 ttcttagagcaggttaaagatttattttcatatttcaacaaag 45  Q
    |||| ||||||| ||||||||||||||||||||||||||||||    
T  6234373 ttctgagagcagcttaaagatttattttcatatttcaacaaag 6234331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 138
Target Start/End: Complemental strand, 6234333 - 6234298
Alignment:
Q  103 aagatggatatgttgttttacttctttgtaacactt 138  Q
    ||||||||||||||||||| ||||||||||||||||    
T  6234333 aagatggatatgttgttttccttctttgtaacactt 6234298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 138
Target Start/End: Original strand, 15220 - 15338
Alignment:
Q  20 agatttattttcatatttcaacaaaggtgggagctacaaatgattggacataaataaatgaatattaacatcaacaataatacaagatggatatgttgtt 119  Q
    ||||| |||||||||||||||||||||||||| ||| || | |||| ||| ||||||||  |||||||||| ||||| ||||||| | ||||||||||||    
T  15220 agattaattttcatatttcaacaaaggtgggaactaaaatttattgtacagaaataaattgatattaacattaacaacaatacaataaggatatgttgtt 15319  T
Q  120 ttacttctttgtaacactt 138  Q
    ||||||||||| |||||||    
T  15320 ttacttctttgaaacactt 15338  T

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