View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_78 (Length: 343)
Name: NF17277_low_78
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_78 |
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| [»] chr2 (3 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 11 - 343
Target Start/End: Complemental strand, 24214752 - 24214422
Alignment:
| Q |
11 |
catagggaagaataataagtcggaaagaaaatatctcatcattgcatattaagcaattctaaatttcaagaggaca-tttatgaaactgcatggctagtg |
109 |
Q |
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| T |
24214752 |
catacggaagaataataagtcagaaagaaaatatctcatcattgcaaattaagcaattctaagtttcaagaggacagtttgtgaaactgcatggctagtg |
24214653 |
T |
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| Q |
110 |
aaagcagaaaatatgttatataattagccatgcatgtatatatttgtatcacgataaagccaaaaccataacactgtataggatatttgtaaatcttgct |
209 |
Q |
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| T |
24214652 |
aaagcagaaaatatgttatataattagccatgcatgtatatatttgtatcacgataaagccaaaaccataacactatataggatatttgtaaatcttgct |
24214553 |
T |
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| Q |
210 |
ataggggtattcataactacgcataaggtaaccaccattaatgcagaaagaaaaatctttcagaatggggacttccttataccccaaacaaattctataa |
309 |
Q |
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| T |
24214552 |
ataggggtattcataactaagcataaggtaaccaccattaatgcagaaagaaaaatctttcagaat--ggacttccttaaatcccaaac-aattctataa |
24214456 |
T |
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| Q |
310 |
caaccccaaaggacgtcgatcaataaaataccat |
343 |
Q |
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| T |
24214455 |
caaccccaaaggacgtcgatcaataaaataccat |
24214422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 173 - 343
Target Start/End: Complemental strand, 24199855 - 24199684
Alignment:
| Q |
173 |
aaccataacactgtataggatatttgtaaatcttgctataggggta----ttcataactacgcataaggtaaccaccattaatgcagaaagaaaaatctt |
268 |
Q |
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| T |
24199855 |
aaccataacactgtaaaggatatttgtaaatctttctatagggatggatgttcatgactaagcgtaagctaaccgtcattaatgcagaaagaaaa-tatt |
24199757 |
T |
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| Q |
269 |
tcagaatggggacttccttataccccaaacaaattctataacaaccccaaaggacgtcgatcaataaaataccat |
343 |
Q |
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| T |
24199756 |
taagaatgg--acttccttataccccaaacaaattgcataacaaccccaaaggacagcaatcaataaaataccat |
24199684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 24199969 - 24199897
Alignment:
| Q |
42 |
tatctcatcattgcatattaagcaattctaaatttcaagaggacatttatgaaactgcatggctagtgaaagc |
114 |
Q |
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| T |
24199969 |
tatctcattattgcatattaatcaattataaatttcaggaggacaactttgaaactgcgtggctagtgacagc |
24199897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 11 - 343
Target Start/End: Complemental strand, 16844810 - 16844480
Alignment:
| Q |
11 |
catagggaagaataataagtcggaaagaaaatatctcatcattgcatattaagcaattctaaatttcaagaggacatttatgaaactgcatggctagtga |
110 |
Q |
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| T |
16844810 |
catagggaagaataataagtcagaaa-aaaatatctcattattgcatattaagcaattctaagtttcaagaggacagttatgaaactgcatggctagtga |
16844712 |
T |
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| Q |
111 |
aagcagaaaatatgttatataattagccatgcatgtatatatttgtatcacgataaagccaaaaccataacactgtataggatatttgtaaatcttgcta |
210 |
Q |
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| T |
16844711 |
aagcagaaaatatgttatataattagccatgcatgtatatatttgtatcacgataaagccaaaaccataacactgtataggatatttgtaaatcttgcta |
16844612 |
T |
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| Q |
211 |
taggggtattcataactacgcataaggtaaccaccattaatgcagaaagaaaaatctttcagaatggggacttccttataccc-caaacaaattctataa |
309 |
Q |
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| T |
16844611 |
tagggatatccataactaagcataaggtaaccatcattaatgcagaaagaaaaatctttcagaat--ggacttccttatgccctaaaaaaaattgtataa |
16844514 |
T |
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| Q |
310 |
caaccccaaaggacgtcgatcaataaaataccat |
343 |
Q |
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| T |
16844513 |
caaccccaaaggatgtcgatcaataaaataccat |
16844480 |
T |
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