View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_79 (Length: 339)
Name: NF17277_low_79
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_79 |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 28272262 - 28272586
Alignment:
| Q |
1 |
tattttattaattcatataataattgctaatactttatgcaccatatcattttattggtcgatgttcttttcaggcactgcattcaatgggagttaaatc |
100 |
Q |
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| T |
28272262 |
tattttattaattcatataataattgctaatactttatgcaccatatcattttattggtcgatgttcttttcaggcactgcattcaatgggagttaaatc |
28272361 |
T |
|
| Q |
101 |
atttgaagcactcgctgaagctgatccgaggaaaatagagctagtgactggtcgaaaatacccatttggcaaccatattaaggattctctcttgtctcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28272362 |
atttgaagcactcgctgaagctgatccgaggaaaatagagctagtgactggtcgaaaatacccatttggcaaccatattaaggattctctcttgtctcta |
28272461 |
T |
|
| Q |
201 |
cctccaaaagttgatgtaaagcttacagaaatcgaaagccatacgcatggaaagtccaagcttgtagtaacattgactaggatatcacagtcagggcagt |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28272462 |
cctccaaaagttgatgtaaagcttacagaaatggaaagccatacacatggaaagtccaagcttgtagtaacattgactaggatatcacagtcagggcagt |
28272561 |
T |
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| Q |
301 |
cagcaaaacgacattatgctgatat |
325 |
Q |
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||||||||||||||||||||||||| |
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| T |
28272562 |
cagcaaaacgacattatgctgatat |
28272586 |
T |
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