View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17277_low_8 (Length: 661)

Name: NF17277_low_8
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17277_low_8
NF17277_low_8
[»] chr4 (39 HSPs)
chr4 (90-261)||(37728493-37728666)
chr4 (539-643)||(37729963-37730067)
chr4 (268-383)||(37729634-37729749)
chr4 (382-501)||(37729807-37729926)
chr4 (90-238)||(37727721-37727869)
chr4 (93-242)||(13509290-13509440)
chr4 (93-257)||(31600917-31601083)
chr4 (100-257)||(26421561-26421719)
chr4 (90-257)||(1290126-1290296)
chr4 (125-271)||(49306764-49306911)
chr4 (90-258)||(12129625-12129796)
chr4 (98-257)||(1835038-1835200)
chr4 (186-257)||(1963199-1963272)
chr4 (133-255)||(31599794-31599919)
chr4 (133-257)||(50909643-50909771)
chr4 (125-257)||(49307991-49308124)
chr4 (98-243)||(10448197-10448342)
chr4 (125-257)||(19750538-19750672)
chr4 (125-257)||(19789134-19789268)
chr4 (168-262)||(27257966-27258062)
chr4 (90-259)||(8155739-8155910)
chr4 (133-257)||(8757678-8757804)
chr4 (181-247)||(50909287-50909353)
chr4 (122-238)||(46638685-46638802)
chr4 (122-262)||(10470544-10470687)
chr4 (102-261)||(1289096-1289258)
chr4 (185-257)||(1964465-1964539)
chr4 (169-262)||(8758844-8758940)
chr4 (185-257)||(17382996-17383069)
chr4 (133-257)||(35934347-35934472)
chr4 (133-258)||(35935504-35935632)
chr4 (186-262)||(54110653-54110728)
chr4 (215-261)||(55603585-55603632)
chr4 (133-242)||(21178016-21178126)
chr4 (154-257)||(10447009-10447116)
chr4 (213-257)||(2193505-2193549)
chr4 (93-157)||(2412850-2412914)
chr4 (185-262)||(3927664-3927743)
chr4 (182-234)||(21539092-21539144)
[»] chr8 (40 HSPs)
chr8 (122-261)||(11282007-11282149)
chr8 (93-238)||(30335663-30335809)
chr8 (93-257)||(30336432-30336599)
chr8 (98-262)||(24359807-24359972)
chr8 (93-238)||(43661754-43661900)
chr8 (154-257)||(5514263-5514367)
chr8 (139-262)||(32207302-32207426)
chr8 (185-262)||(8388462-8388539)
chr8 (122-238)||(11283169-11283286)
chr8 (98-249)||(2379860-2380010)
chr8 (98-262)||(22221300-22221467)
chr8 (98-262)||(22227642-22227809)
chr8 (101-257)||(43661268-43661427)
chr8 (90-257)||(10006347-10006517)
chr8 (90-257)||(10007691-10007861)
chr8 (93-261)||(2378863-2379030)
chr8 (133-238)||(24123869-24123975)
chr8 (133-262)||(30570227-30570358)
chr8 (188-259)||(29968364-29968436)
chr8 (187-262)||(1823550-1823627)
chr8 (187-262)||(1857995-1858072)
chr8 (133-257)||(5513985-5514111)
chr8 (133-242)||(24122902-24123012)
chr8 (168-259)||(24361199-24361292)
chr8 (133-242)||(45114488-45114597)
chr8 (133-257)||(29043401-29043528)
chr8 (133-239)||(1824049-1824156)
chr8 (133-239)||(1858494-1858601)
chr8 (185-257)||(11287779-11287853)
chr8 (98-257)||(22220391-22220553)
chr8 (115-262)||(40471100-40471249)
chr8 (133-242)||(18978039-18978149)
chr8 (94-246)||(40469356-40469509)
chr8 (186-261)||(8389714-8389791)
chr8 (197-262)||(12353396-12353462)
chr8 (133-242)||(18970930-18971040)
chr8 (190-257)||(36249555-36249624)
chr8 (185-242)||(3208206-3208263)
chr8 (166-238)||(12351945-12352018)
chr8 (132-257)||(18979090-18979218)
[»] chr5 (30 HSPs)
chr5 (102-257)||(22940563-22940720)
chr5 (98-258)||(42195136-42195297)
chr5 (93-204)||(16650050-16650162)
chr5 (98-262)||(24332911-24333077)
chr5 (93-257)||(16650786-16650953)
chr5 (90-257)||(25523072-25523242)
chr5 (133-257)||(2186774-2186900)
chr5 (90-262)||(19752910-19753084)
chr5 (122-242)||(42196160-42196281)
chr5 (133-262)||(28539791-28539922)
chr5 (133-255)||(36486459-36486584)
chr5 (183-261)||(1016885-1016965)
chr5 (90-257)||(18486830-18487000)
chr5 (185-257)||(20214199-20214272)
chr5 (90-221)||(25524026-25524158)
chr5 (133-257)||(28538679-28538806)
chr5 (141-262)||(21835039-21835162)
chr5 (90-262)||(18485136-18485318)
chr5 (186-243)||(1015503-1015560)
chr5 (186-260)||(38834087-38834162)
chr5 (186-257)||(21834944-21835016)
chr5 (98-240)||(25056316-25056460)
chr5 (90-261)||(2686329-2686505)
chr5 (182-262)||(33158096-33158178)
chr5 (184-242)||(1796074-1796132)
chr5 (133-242)||(36485320-36485430)
chr5 (185-242)||(19754154-19754211)
chr5 (188-241)||(34893686-34893739)
chr5 (186-242)||(7311610-7311666)
chr5 (133-257)||(33160258-33160384)
[»] chr1 (38 HSPs)
chr1 (95-262)||(43378646-43378815)
chr1 (93-262)||(52274966-52275138)
chr1 (93-257)||(24422803-24422970)
chr1 (98-262)||(39153053-39153219)
chr1 (122-257)||(51684369-51684507)
chr1 (133-261)||(39151930-39152061)
chr1 (133-262)||(45157180-45157311)
chr1 (122-257)||(51685725-51685863)
chr1 (133-261)||(43058785-43058915)
chr1 (93-234)||(43377748-43377890)
chr1 (90-257)||(36613832-36614002)
chr1 (133-258)||(45156051-45156179)
chr1 (122-255)||(46066530-46066663)
chr1 (90-262)||(11436040-11436215)
chr1 (98-262)||(35594215-35594380)
chr1 (93-262)||(24426007-24426178)
chr1 (122-238)||(30249450-30249567)
chr1 (133-260)||(40384724-40384855)
chr1 (133-261)||(45149941-45150072)
chr1 (102-257)||(11437139-11437297)
chr1 (90-261)||(50680331-50680504)
chr1 (98-257)||(35595128-35595291)
chr1 (133-262)||(39698561-39698692)
chr1 (90-262)||(37526806-37526980)
chr1 (133-257)||(31194058-31194183)
chr1 (90-257)||(39222401-39222572)
chr1 (93-242)||(14999304-14999450)
chr1 (93-261)||(52276094-52276265)
chr1 (154-238)||(7675451-7675536)
chr1 (90-175)||(39221402-39221487)
chr1 (133-257)||(45148584-45148710)
chr1 (183-242)||(7674547-7674605)
chr1 (211-257)||(41364832-41364879)
chr1 (133-239)||(43059977-43060084)
chr1 (133-257)||(39699738-39699864)
chr1 (185-261)||(7983049-7983126)
chr1 (133-206)||(30248168-30248241)
chr1 (98-179)||(46525737-46525817)
[»] chr3 (40 HSPs)
chr3 (93-257)||(8456481-8456647)
chr3 (93-238)||(23769881-23770026)
chr3 (90-257)||(12700178-12700346)
chr3 (133-257)||(19984852-19984979)
chr3 (133-262)||(54986978-54987108)
chr3 (94-260)||(23770339-23770508)
chr3 (122-262)||(46721180-46721323)
chr3 (102-257)||(7758405-7758563)
chr3 (122-257)||(46719944-46720082)
chr3 (133-261)||(7267643-7267773)
chr3 (128-257)||(534502-534634)
chr3 (90-257)||(47614188-47614358)
chr3 (133-262)||(54540761-54540893)
chr3 (186-257)||(51037539-51037611)
chr3 (185-257)||(22776836-22776910)
chr3 (169-262)||(49398125-49398220)
chr3 (98-261)||(51347267-51347433)
chr3 (185-262)||(12703524-12703602)
chr3 (98-257)||(19986007-19986170)
chr3 (185-262)||(52104479-52104554)
chr3 (185-261)||(7268851-7268928)
chr3 (93-257)||(40426709-40426877)
chr3 (93-257)||(29931229-29931396)
chr3 (170-262)||(29932707-29932801)
chr3 (93-257)||(29980383-29980550)
chr3 (170-262)||(29981861-29981955)
chr3 (112-200)||(46492967-46493055)
chr3 (133-240)||(49216269-49216377)
chr3 (185-259)||(34940211-34940286)
chr3 (185-257)||(51038814-51038888)
chr3 (185-238)||(55192019-55192072)
chr3 (186-230)||(54654331-54654375)
chr3 (169-256)||(24516464-24516554)
chr3 (214-257)||(53901441-53901484)
chr3 (133-230)||(8875938-8876036)
chr3 (215-261)||(39844251-39844299)
chr3 (211-261)||(47610630-47610682)
chr3 (90-179)||(47615505-47615594)
chr3 (93-262)||(54539753-54539924)
chr3 (215-260)||(39843051-39843098)
[»] chr2 (30 HSPs)
chr2 (93-257)||(26545452-26545619)
chr2 (90-257)||(13030295-13030462)
chr2 (93-262)||(11257620-11257791)
chr2 (99-262)||(22587892-22588056)
chr2 (125-257)||(18300688-18300820)
chr2 (90-239)||(18869090-18869242)
chr2 (93-257)||(26544152-26544318)
chr2 (93-239)||(11258742-11258889)
chr2 (90-257)||(18905916-18906085)
chr2 (90-262)||(22848189-22848364)
chr2 (182-254)||(24476865-24476937)
chr2 (211-262)||(21837305-21837356)
chr2 (185-247)||(32739638-32739700)
chr2 (122-230)||(11996739-11996848)
chr2 (98-242)||(18797267-18797412)
chr2 (133-241)||(22587522-22587630)
chr2 (125-257)||(18299376-18299511)
chr2 (90-257)||(28617926-28618094)
chr2 (185-257)||(36449781-36449855)
chr2 (134-262)||(802563-802693)
chr2 (184-242)||(18868944-18869002)
chr2 (211-257)||(21837073-21837119)
chr2 (214-271)||(8535709-8535766)
chr2 (133-257)||(7899853-7899980)
chr2 (187-261)||(36450947-36451022)
chr2 (185-261)||(7898690-7898768)
chr2 (184-263)||(13567969-13568050)
chr2 (195-257)||(11938822-11938886)
chr2 (182-230)||(810802-810850)
chr2 (133-224)||(41878132-41878224)
[»] chr7 (17 HSPs)
chr7 (93-242)||(31659643-31659793)
chr7 (135-257)||(21505419-21505542)
chr7 (90-262)||(7500453-7500627)
chr7 (90-247)||(47369796-47369954)
chr7 (90-243)||(22629505-22629659)
chr7 (90-242)||(18372385-18372538)
chr7 (90-257)||(18371427-18371597)
chr7 (133-261)||(42886257-42886388)
chr7 (98-261)||(6618208-6618372)
chr7 (90-257)||(7501780-7501950)
chr7 (98-257)||(22630388-22630550)
chr7 (98-257)||(43899451-43899610)
chr7 (185-262)||(11662575-11662654)
chr7 (122-257)||(3227554-3227692)
chr7 (133-255)||(14999126-14999249)
chr7 (185-242)||(5111637-5111694)
chr7 (190-242)||(20163585-20163637)
[»] scaffold0019 (2 HSPs)
scaffold0019 (125-257)||(60093-60228)
scaffold0019 (125-257)||(61422-61557)
[»] chr6 (13 HSPs)
chr6 (134-257)||(16704469-16704595)
chr6 (133-260)||(1829574-1829704)
chr6 (99-257)||(27437831-27437992)
chr6 (125-257)||(6842246-6842381)
chr6 (90-257)||(7314883-7315052)
chr6 (133-239)||(26574642-26574748)
chr6 (141-262)||(3333005-3333129)
chr6 (185-257)||(30495722-30495794)
chr6 (133-259)||(5658757-5658886)
chr6 (133-242)||(10785884-10785994)
chr6 (90-257)||(7316222-7316392)
chr6 (185-262)||(1828737-1828816)
chr6 (185-262)||(29473075-29473154)
[»] scaffold0003 (1 HSPs)
scaffold0003 (99-257)||(49370-49531)
[»] scaffold0321 (1 HSPs)
scaffold0321 (181-257)||(18731-18809)
[»] scaffold0302 (2 HSPs)
scaffold0302 (185-257)||(17473-17547)
scaffold0302 (133-257)||(18747-18874)
[»] scaffold0586 (2 HSPs)
scaffold0586 (133-257)||(8998-9123)
scaffold0586 (154-261)||(6342-6452)
[»] scaffold1303 (1 HSPs)
scaffold1303 (125-257)||(1442-1577)
[»] scaffold0369 (1 HSPs)
scaffold0369 (186-262)||(13191-13267)
[»] scaffold2034 (2 HSPs)
scaffold2034 (98-257)||(236-397)
scaffold2034 (185-238)||(1002-1055)
[»] scaffold0320 (1 HSPs)
scaffold0320 (90-224)||(19526-19661)
[»] scaffold0186 (1 HSPs)
scaffold0186 (196-257)||(23084-23145)
[»] scaffold0049 (1 HSPs)
scaffold0049 (141-262)||(7394-7518)
[»] scaffold0059 (2 HSPs)
scaffold0059 (133-247)||(3690-3805)
scaffold0059 (182-257)||(4751-4827)
[»] scaffold0112 (1 HSPs)
scaffold0112 (185-257)||(37151-37224)
[»] scaffold0294 (1 HSPs)
scaffold0294 (125-257)||(5401-5536)
[»] scaffold0045 (1 HSPs)
scaffold0045 (186-238)||(49109-49161)


Alignment Details
Target: chr4 (Bit Score: 118; Significance: 7e-60; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 90 - 261
Target Start/End: Original strand, 37728493 - 37728666
Alignment:
Q  90 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaa-ggtcaaa 188  Q
    ||||||||||||  ||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||| ||||||||||||| |||||||    
T  37728493 ttaattatttacggacatgacatgccacacatgcgttgacttggtcaaaattgactaaaaggatcaaagatgcaaagaagctaaatcttaaagggtcaaa 37728592  T
Q  189 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagg-ggaaaaagtgcactttaacct 261  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  37728593 attgtagtttttgtacataggaggccaaaattgcaactttttaaaagttaggaggaaaaaatgcactttaacct 37728666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 539 - 643
Target Start/End: Original strand, 37729963 - 37730067
Alignment:
Q  539 atgaaattgataataatcagttaaatatcctcgttatccattaataacttttatcttctccataggaaataatggcagataatcaactcaacaatgctta 638  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37729963 atgaaattgataataatcagttaaatatcctcgttatccattaataacttttatcttctccatagaaaataatggcagataatcaactcaacaatgctta 37730062  T
Q  639 ctatg 643  Q
    |||||    
T  37730063 ctatg 37730067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 268 - 383
Target Start/End: Original strand, 37729634 - 37729749
Alignment:
Q  268 tactgatttttattaagaaacgttattttgaaataaaataaaataaatagttcaccaaaagggactcttactctatcaaattatactcatattaatcatt 367  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||    
T  37729634 tactgatttttatttaaaaacgttattttgaaataaaataaaataaatagttcaccaaaagggactcttactctatcaatttatattcatattagtcatt 37729733  T
Q  368 catatttttcatatat 383  Q
    ||||||||||||||||    
T  37729734 catatttttcatatat 37729749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 382 - 501
Target Start/End: Original strand, 37729807 - 37729926
Alignment:
Q  382 attaataacatgtgataaatatagagaccatattgtttannnnnnnngaaagaagagaccatattgttagtaggtagctaaaatacagtgaactaattta 481  Q
    |||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37729807 attaataacatgtgataaatatagagaccatattgtttattttttttgaaagaagagaccatattgttagtaggtagctaaaatacagtgaactaattta 37729906  T
Q  482 tacaaagtgggctgcaccaa 501  Q
    ||||||||||||||||||||    
T  37729907 tacaaagtgggctgcaccaa 37729926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 90 - 238
Target Start/End: Complemental strand, 37727869 - 37727721
Alignment:
Q  90 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaa-aggtcaaa 188  Q
    |||||||||||||||  |||||||| ||||||||||||| || ||||||||||||||||| || ||||||| || |||| |||||||||||  ||| |||    
T  37727869 ttaattatttacacatgtggcatgcaacacatgcgttgatttggtcaaaattgactaaaatgaccaaagatacaaagagactaaatcttaaggggttaaa 37727770  T
Q  189 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta 238  Q
    |||||| |||||||| ||| |  ||||||||| |||||||||||||||||    
T  37727769 attgtagtttttgtatata-agagccaaaattacaactttttaaaagtta 37727721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 93 - 242
Target Start/End: Original strand, 13509290 - 13509440
Alignment:
Q  93 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaatt 191  Q
    ||||||||||||  ||||||||||||||||||||||||| |||||||||| | |||| || ||||| |||| || ||||||||||||  || ||||||||    
T  13509290 attatttacacatgtggcatgccacacatgcgttgacttggtcaaaattggccaaaaggagcaaaggtgcaaaggggctaaatcttaggggatcaaaatt 13509389  T
Q  192 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggg 242  Q
    ||| ||||  ||| | |  |||||||||||||| |||||||||||||||||    
T  13509390 gtagttttcatacttggggggccaaaattgcaattttttaaaagttagggg 13509440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 93 - 257
Target Start/End: Original strand, 31600917 - 31601083
Alignment:
Q  93 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaatt 191  Q
    |||| |||||||| |||||||||||| | || |||||   |||||||||||| |||| |||||||| |||| |  ||||||||||||| || ||||||||    
T  31600917 attaattacacacgtggcatgccacataggcattgaccg-gtcaaaattgacaaaaaggatcaaagttgcaaatgggctaaatcttaaggggtcaaaatt 31601015  T
Q  192 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt--aggggaaaaagtgcacttta 257  Q
    ||| ||||||||| |||  || ||||||||||| ||||||||||||  ||||||||||||||||||||    
T  31601016 gtagtttttgtacttagggggtcaaaattgcaagtttttaaaagttagaggggaaaaagtgcacttta 31601083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 100 - 257
Target Start/End: Original strand, 26421561 - 26421719
Alignment:
Q  100 acacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaattt 198  Q
    |||||| ||||||||||| || ||||||||| | | |||||||||||||| |||||||  ||||  | ||||||||||||| || ||||||||||| |||    
T  26421561 acacacgtggcatgccacgcaggcgttgactattttaaaattgactaaaatgatcaaatttgcaatg-ggctaaatcttaaggggtcaaaattgtagttt 26421659  T
Q  199 ttgtacatagaaggccaaaattgcaactttttaaaagttag-gggaaaaagtgcacttta 257  Q
    |||||| ||| ||| ||||||||||| ||||| |||||||| ||| ||||||||||||||    
T  26421660 ttgtacttaggaggtcaaaattgcaagtttttgaaagttagaggggaaaagtgcacttta 26421719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 90 - 257
Target Start/End: Original strand, 1290126 - 1290296
Alignment:
Q  90 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaa 188  Q
    ||||||| |||||||  |||||||||||  | |||||||||  |||||||||||| |||| || |||||||||| || || |||||||||  || | |||    
T  1290126 ttaattaattacacatgtggcatgccacttaggcgttgactcggtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttagggggctaaa 1290225  T
Q  189 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 257  Q
    |||||| ||||||||| |||| ||||||||||||||  |||| |||||||  |||| ||||||||||||||    
T  1290226 attgtagtttttgtacttagagggccaaaattgcaagattttgaaagttaaggggggaaaagtgcacttta 1290296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 125 - 271
Target Start/End: Complemental strand, 49306911 - 49306764
Alignment:
Q  125 ttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtcaaaattgtaatttttgtacatagaaggccaaaattgcaa 224  Q
    |||||||||||||||||||  |||| || |||||||||| |  | ||||||| ||  || |||||||||| ||||||||| || | ||||||||||||||    
T  49306911 ttgactttgtcaaaattgataaaaaggaccaaagatgcaaaatgactaaatcatattgggcaaaattgtagtttttgtacttaaatggccaaaattgcaa 49306812  T
Q  225 ctttttaaaagttagggg-aaaaagtgcactttaaccttcaaagtact 271  Q
     ||||| |||||| |||| ||||||||||||||| |||  ||||||||    
T  49306811 gtttttgaaagttgggggaaaaaagtgcactttagcctaaaaagtact 49306764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 90 - 258
Target Start/End: Complemental strand, 12129796 - 12129625
Alignment:
Q  90 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaa 188  Q
    ||||||| |||||||| |||| ||||||  | ||||||| |  |||||||||||  |||| || |||||||||| |  ||||||||||||| || |||||    
T  12129796 ttaattaattacacacgtggcctgccacgtaggcgttgaataagtcaaaattgatcaaaatgaccaaagatgcaaatgggctaaatcttaaggggtcaaa 12129697  T
Q  189 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcactttaa 258  Q
    |||||| ||||||||| ||   |||||||||||||| ||||| |||||||   ||| |||||||||||||||    
T  12129696 attgtagtttttgtacttacggggccaaaattgcaagtttttgaaagttaagaggggaaaagtgcactttaa 12129625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 98 - 257
Target Start/End: Original strand, 1835038 - 1835200
Alignment:
Q  98 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaattgtaat 196  Q
    |||||||| |||||||||| | | ||||||||   |||||||||| |||||| || |||||||||| || ||||||||||||   ||||||||||||| |    
T  1835038 ttacacacgtggcatgccaaataagcgttgaccaagtcaaaattggctaaaaggaccaaagatgcaaaggggctaaatcttagggggtcaaaattgtagt 1835137  T
Q  197 ttttgtacatagaaggccaaaattgcaactttttaaaagttaggg--gaaaaagtgcacttta 257  Q
    |||  ||| |||  || ||||||||||| ||||| ||||||||||  | ||||||||||||||    
T  1835138 tttaatacttagggggtcaaaattgcaagtttttgaaagttagggatggaaaagtgcacttta 1835200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 186 - 257
Target Start/End: Complemental strand, 1963272 - 1963199
Alignment:
Q  186 aaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 257  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||| |||||||  |||| ||||||||||||||    
T  1963272 aaaattgtagtttttgtacataggaggccaaaattgcaactttttgaaagttaaggggggaaaagtgcacttta 1963199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 133 - 255
Target Start/End: Complemental strand, 31599919 - 31599794
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||| | |||| |||||||| |||| || ||||||||||||  || | ||||||||| ||||||||| |||  || ||||||||||| ||||||    
T  31599919 gtcaaaattggcaaaaaggatcaaagttgcaaaggggctaaatcttaggggaccaaaattgtagtttttgtacttagggggtcaaaattgcaagttttta 31599820  T
Q  232 aaagtta--ggggaaaaagtgcactt 255  Q
    |||||||  |||||||||||||||||    
T  31599819 aaagttaggggggaaaaagtgcactt 31599794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 133 - 257
Target Start/End: Original strand, 50909643 - 50909771
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg--tcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttt 230  Q
    |||||||||||  |||| || |||||||||| || ||||||||||||| ||  ||||||||||| ||||| |||||||   | |||||| ||||||||||    
T  50909643 gtcaaaattgatcaaaaggaccaaagatgcaaaggggctaaatcttaagggggtcaaaattgtagtttttatacatagggagtcaaaatcgcaacttttt 50909742  T
Q  231 aaaagttagg--ggaaaaagtgcacttta 257  Q
    |||| |||||  |||||||||||||||||    
T  50909743 aaaacttagggtggaaaaagtgcacttta 50909771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 125 - 257
Target Start/End: Original strand, 49307991 - 49308124
Alignment:
Q  125 ttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtcaaaattgtaatttttgtacatagaaggccaaaattgcaa 224  Q
    ||||||| ||||||||||||  ||| || |||||||||  || ||| ||||| ||  || |||||||||| ||||||||| |||  ||||||||||||||    
T  49307991 ttgacttggtcaaaattgacccaaaggaccaaagatgcgcaggggcaaaatcatagggggcaaaattgtagtttttgtacttagggggccaaaattgcaa 49308090  T
Q  225 ctttttaaaagtta-ggggaaaaagtgcacttta 257  Q
     ||||| ||||||| |||| ||||||||||||||    
T  49308091 gtttttgaaagttaggggggaaaagtgcacttta 49308124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 98 - 243
Target Start/End: Original strand, 10448197 - 10448342
Alignment:
Q  98 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaat 196  Q
    |||||||| |||||||||||  | || ||||||  |||||||||| | |||| || |||||||||| || ||||| |||||| ||| | ||||||||| |    
T  10448197 ttacacacgtggcatgccacgtaggcattgactg-gtcaaaattggccaaaaggaccaaagatgcaaaggggctatatcttagagggccaaaattgtagt 10448295  T
Q  197 ttttgtacatagaaggccaaaattgcaactttttaaaagttagggga 243  Q
    ||||||||||||  ||| ||||| |||||||||| ||| ||||||||    
T  10448296 ttttgtacatagggggctaaaatcgcaactttttgaaacttagggga 10448342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 125 - 257
Target Start/End: Original strand, 19750538 - 19750672
Alignment:
Q  125 ttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgca 223  Q
    ||||||| ||||||| |||| |||| |||||||  ||||  | ||||||||||||  ||   ||||||||| ||||||||| |||  |||||||||||||    
T  19750538 ttgacttggtcaaaagtgaccaaaaggatcaaatttgcaatggggctaaatcttaggggggtaaaattgtagtttttgtacttagggggccaaaattgca 19750637  T
Q  224 actttttaaaagtta-ggggaaaaagtgcacttta 257  Q
    | ||||||||||||| |||| ||||||||||||||    
T  19750638 agtttttaaaagttaggggggaaaagtgcacttta 19750672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 125 - 257
Target Start/End: Complemental strand, 19789268 - 19789134
Alignment:
Q  125 ttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgca 223  Q
    ||||||| ||||||| |||| |||| |||||||  ||||  | ||||||||||||  ||   ||||||||| ||||||||| |||  |||||||||||||    
T  19789268 ttgacttggtcaaaagtgaccaaaaggatcaaatttgcaatggggctaaatcttaggggggtaaaattgtagtttttgtacttagggggccaaaattgca 19789169  T
Q  224 actttttaaaagtta-ggggaaaaagtgcacttta 257  Q
    | ||||||||||||| |||| ||||||||||||||    
T  19789168 agtttttaaaagttaggggggaaaagtgcacttta 19789134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 168 - 262
Target Start/End: Original strand, 27257966 - 27258062
Alignment:
Q  168 ggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt-aggggaaaaagtgcactttaacctt 262  Q
    ||||||||||||| || | ||||||| | |||||||| ||||| || |||||||||||||||||||||||| |||||| |||||||| |||| ||||    
T  27257966 ggctaaatcttaaggggttaaaattggagtttttgtatatagagggtcaaaattgcaactttttaaaagttaaggggagaaagtgcattttatcctt 27258062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 259
Target Start/End: Complemental strand, 8155910 - 8155739
Alignment:
Q  90 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaa 188  Q
    ||||||| |||||||| |||| ||| ||  | ||||||| |  |||||| ||||| |||| ||  ||||||||| || ||||||||||||  || | |||    
T  8155910 ttaattaattacacacgtggcctgctacgtaggcgttgaataagtcaaagttgaccaaaatgactaaagatgcaaagcggctaaatcttagggggccaaa 8155811  T
Q  189 attgtaatttttgtacatagaag-gccaaaattgcaactttttaaaagttaggggaaaaagtgcactttaac 259  Q
    |||||| |||||| || |||  | || |||||||||| ||||| ||||||||||| ||||||||||||||||    
T  8155810 attgtagtttttgaacttaggggagctaaaattgcaagtttttgaaagttagggggaaaagtgcactttaac 8155739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 257
Target Start/End: Complemental strand, 8757804 - 8757678
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||||| |||| ||| |||  ||||  | ||||||||||||| |||| ||||||||| ||| ||||| |||  ||| ||||||| || |||||     
T  8757804 gtcaaaattgaccaaaaggattaaaattgcaatggggctaaatcttaagggtccaaaattgtagtttctgtacttagggggctaaaattgtaagtttttg 8757705  T
Q  232 aaagtta-ggggaaaaagtgcacttta 257  Q
    ||||||| |||||||||||||||||||    
T  8757704 aaagttaaggggaaaaagtgcacttta 8757678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 247
Target Start/End: Complemental strand, 50909353 - 50909287
Alignment:
Q  181 aggtcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttaggggaaaaa 247  Q
    |||| ||||||||| ||||| || |||| ||| ||||||||||||||||||||| ||||||||||||    
T  50909353 aggttaaaattgtagtttttatatataggaggtcaaaattgcaactttttaaaacttaggggaaaaa 50909287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 122 - 238
Target Start/End: Original strand, 46638685 - 46638802
Alignment:
Q  122 gcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaatt 220  Q
    ||||||||||||||||||||||  |||||||  |||| |||| || | ||||||||||  || | ||||||||||||||||| |||||  |  |||||||    
T  46638685 gcgttgactttgtcaaaattgatcaaaaagactaaagttgcaaagggactaaatcttagggggctaaaattgtaatttttgttcataggggatcaaaatt 46638784  T
Q  221 gcaactttttaaaagtta 238  Q
     ||||||||| |||||||    
T  46638785 ccaactttttgaaagtta 46638802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 262
Target Start/End: Complemental strand, 10470687 - 10470544
Alignment:
Q  122 gcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggt-caaaattgtaatttttgtacatagaaggccaaaatt 220  Q
    |||||||||| |||||||||||  |||| || ||||| ||||  | ||||||||||||  ||  | ||||||| ||||| |||| |||| || |||||||    
T  10470687 gcgttgacttggtcaaaattgatcaaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgtgattttggtacttagagggtcaaaatt 10470588  T
Q  221 gcaactttttaaaagtta--ggggaaaaagtgcactttaacctt 262  Q
    |||| ||||| |||||||  |||| |||||||||||||| ||||    
T  10470587 gcaagtttttgaaagttaaggggggaaaagtgcactttagcctt 10470544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 102 - 261
Target Start/End: Complemental strand, 1289258 - 1289096
Alignment:
Q  102 acacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaa-aggtcaaaattgtaattttt 200  Q
    |||| |||||||||||  | |||||||||  |||||||||||| |||| || ||||||||||  | || |||||||||| |||  ||||||||| |||||    
T  1289258 acacgtggcatgccacttaagcgttgactcggtcaaaattgaccaaaaggaccaaagatgcaagggggttaaatcttaagaggctaaaattgtagttttt 1289159  T
Q  201 gtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcactttaacct 261  Q
     ||| |||| |  ||||||| ||| | ||| |||||||  |||| |||||| |||||||||||    
T  1289158 atacttagaggatcaaaattacaaatatttgaaagttaaggggggaaaagttcactttaacct 1289096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 185 - 257
Target Start/End: Original strand, 1964465 - 1964539
Alignment:
Q  185 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 257  Q
    |||||||||| ||||||| |||||  ||||||||||| ||||||||||||||||  || | ||||||||||||||    
T  1964465 caaaattgtagtttttgttcatagggggccaaaattgtaactttttaaaagttaagggtggaaaagtgcacttta 1964539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 262
Target Start/End: Original strand, 8758844 - 8758940
Alignment:
Q  169 gctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcactttaacctt 262  Q
    |||||||||||| || | ||||||||| ||| ||||| |||  |||||||||||||| ||||| |||||||  |||| ||||||||| |||||||||    
T  8758844 gctaaatcttaaggggccaaaattgtagtttctgtacttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcattttaacctt 8758940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 257
Target Start/End: Complemental strand, 17383069 - 17382996
Alignment:
Q  185 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggga-aaaagtgcacttta 257  Q
    |||||||||| ||||||||| ||   | |||||||||||| ||||| |||||||||||| ||||||||||||||    
T  17383069 caaaattgtagtttttgtacttaagggaccaaaattgcaagtttttgaaagttaggggagaaaagtgcacttta 17382996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 257
Target Start/End: Complemental strand, 35934472 - 35934347
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||||| ||||  || |||| ||||  | ||||||||||||| || | |||||| |||||| | ||| |||  | |||||||| ||| |||||     
T  35934472 gtcaaaattgaccaaaagaattaaagttgcaatggggctaaatcttaaggggccaaaattataatttctttacttaggggaccaaaattacaagtttttg 35934373  T
Q  232 aaagttaggggaaaaagtgcacttta 257  Q
    ||||||||||| ||||||||||||||    
T  35934372 aaagttagggggaaaagtgcacttta 35934347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 258
Target Start/End: Original strand, 35935504 - 35935632
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||| | |||| ||| |||| ||||  ||||||||||||||  || | ||||||||| ||| ||||| |||  ||| |||||||||| ||||||    
T  35935504 gtcaaaattggccaaaaggattaaagttgcaatgaggctaaatcttagggggccaaaattgtagtttatgtacttagggggctaaaattgcaaattttta 35935603  T
Q  232 aaagtta--ggggaaaaagtgcactttaa 258  Q
    |||||||  ||||  ||||||||||||||    
T  35935604 aaagttaagggggggaaagtgcactttaa 35935632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 186 - 262
Target Start/End: Original strand, 54110653 - 54110728
Alignment:
Q  186 aaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttaggggaaaaagtgcactttaacctt 262  Q
    |||||| |||||||||||||| | ||| ||||||||||| ||||| ||||||| ||  |||||| ||||||||||||    
T  54110653 aaaattataatttttgtacattggaggtcaaaattgcaaattttttaaagtta-ggataaaagtacactttaacctt 54110728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 261
Target Start/End: Original strand, 55603585 - 55603632
Alignment:
Q  215 aaaattgcaactttttaaaagtta-ggggaaaaagtgcactttaacct 261  Q
    |||||||||| ||||| ||||||| |||||||||||||||||||||||    
T  55603585 aaaattgcaagtttttgaaagttaaggggaaaaagtgcactttaacct 55603632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 133 - 242
Target Start/End: Complemental strand, 21178126 - 21178016
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||| | |||| |||||||| |||| |  |||||||| |||  || ||||||||||| ||||||| |||||  |  ||||||||||||||| |     
T  21178126 gtcaaaattggcaaaaatgatcaaagttgcaaaagggctaaattttagggggtcaaaattgtagtttttgttcataggggatcaaaattgcaactttatg 21178027  T
Q  232 aaagttagggg 242  Q
    |||||||||||    
T  21178026 aaagttagggg 21178016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 257
Target Start/End: Complemental strand, 10447116 - 10447009
Alignment:
Q  154 caaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt---aggggaaaaagt 249  Q
    |||||||||| || ||||||||||||  ||   ||||||||  |||||||||||||  ||| |||||||||||||||| ||| ||   ||||| ||||||    
T  10447116 caaagatgcaaaggggctaaatcttaggggggtaaaattgtggtttttgtacatagggggctaaaattgcaactttttgaaacttaagagggggaaaagt 10447017  T
Q  250 gcacttta 257  Q
    ||||||||    
T  10447016 gcacttta 10447009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 2193505 - 2193549
Alignment:
Q  213 ccaaaattgcaactttttaaaagttaggggaaaaagtgcacttta 257  Q
    |||||||||||||||||| ||| ||| |||||||| |||||||||    
T  2193505 ccaaaattgcaacttttttaaacttaagggaaaaattgcacttta 2193549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 93 - 157
Target Start/End: Original strand, 2412850 - 2412914
Alignment:
Q  93 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaa 157  Q
    ||||||||||| | ||||||||||| || | ||||| |  ||||||||||||||||| |||||||    
T  2412850 attatttacacgcgtggcatgccacgcaggtgttgattaagtcaaaattgactaaaaggatcaaa 2412914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 185 - 262
Target Start/End: Complemental strand, 3927743 - 3927664
Alignment:
Q  185 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt--aggggaaaaagtgcactttaacctt 262  Q
    |||||||||| ||||  ||||| |  ||||||||| ||||| |||||||||||  ||||| |||||||||||||| ||||    
T  3927743 caaaattgtagttttcatacatggggggccaaaatcgcaacattttaaaagttagagggggaaaagtgcactttagcctt 3927664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 21539092 - 21539144
Alignment:
Q  182 ggtcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaa 234  Q
    ||||||||||||| |||||  || ||| ||||||||||||||| |||||||||    
T  21539092 ggtcaaaattgtagtttttacacttaggaggccaaaattgcaagtttttaaaa 21539144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 40)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 122 - 261
Target Start/End: Complemental strand, 11282149 - 11282007
Alignment:
Q  122 gcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaatt 220  Q
    ||||||||||||||||||||||  ||||||||||||  |||| || || |||||||||  || |||||||||| ||||||||| ||||  ||||||||||    
T  11282149 gcgttgactttgtcaaaattgatcaaaaagatcaaaattgcaaaggggttaaatcttagggggtcaaaattgtcatttttgtatatagggggccaaaatt 11282050  T
Q  221 gcaactttttaaaagtta--ggggaaaaagtgcactttaacct 261  Q
    ||||||||||||||||||  |||||||||||||||||||||||    
T  11282049 gcaactttttaaaagttaagggggaaaaagtgcactttaacct 11282007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 93 - 238
Target Start/End: Complemental strand, 30335809 - 30335663
Alignment:
Q  93 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaatt 191  Q
    ||||||||||||  ||||||||||||||||||||||||| |||||||||||  |||| || |||||||||| || ||||||||||||   ||| ||||||    
T  30335809 attatttacacatgtggcatgccacacatgcgttgacttggtcaaaattgaacaaaaggaccaaagatgcaaaggggctaaatcttagggggttaaaatt 30335710  T
Q  192 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta 238  Q
    ||||||||||||| |||   ||||||||||||| |||||||||||||    
T  30335709 gtaatttttgtacttagcgagccaaaattgcaagtttttaaaagtta 30335663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 93 - 257
Target Start/End: Original strand, 30336432 - 30336599
Alignment:
Q  93 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaatt 191  Q
    |||||||||| || ||||||||||||||||| ||||||| |||||||||||| |||| || |||||||||| |  |||||||||||| | ||| ||||||    
T  30336432 attatttacatacgtggcatgccacacatgcattgacttggtcaaaattgaccaaaaggaccaaagatgcaaaatggctaaatcttagagggttaaaatt 30336531  T
Q  192 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 257  Q
    ||| ||||||||| ||| |||| ||||||  || ||||| |||||||  |||||| ||||||||||||    
T  30336532 gtagtttttgtacttaggaggctaaaattataagtttttgaaagttaggggggaagaagtgcacttta 30336599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 98 - 262
Target Start/End: Complemental strand, 24359972 - 24359807
Alignment:
Q  98 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaattgtaat 196  Q
    ||||||||||| ||||||| | | ||||||| || |||||||||||| |||  ||  ||||||||| | |||||||||||||   ||||||||||||| |    
T  24359972 ttacacacatgacatgccaaataagcgttgatttggtcaaaattgaccaaagtgactaaagatgcaaataggctaaatcttagggggtcaaaattgtagt 24359873  T
Q  197 ttttgtacatagaaggccaaaattgcaactttttaaaagttag-gggaaaaagtgcactttaacctt 262  Q
    ||||||| |||| |||| ||||| ||||||||||||||||||| ||||||||| |||||||| ||||    
T  24359872 ttttgtatatag-aggcaaaaatcgcaactttttaaaagttagagggaaaaagagcactttagcctt 24359807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 93 - 238
Target Start/End: Original strand, 43661754 - 43661900
Alignment:
Q  93 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaatt 191  Q
    ||||||||||||  ||||||||||||||||||||||||| |||||||||||  |||| || ||||||||||    ||| ||||||||   || |||||||    
T  43661754 attatttacacatgtggcatgccacacatgcgttgacttggtcaaaattgatcaaaaggaccaaagatgcaattgggcgaaatcttagggggccaaaatt 43661853  T
Q  192 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta 238  Q
     || |||||||||||||| |   |||||||||||||||| |||||||    
T  43661854 ttagtttttgtacatagaggattaaaattgcaactttttgaaagtta 43661900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 154 - 257
Target Start/End: Original strand, 5514263 - 5514367
Alignment:
Q  154 caaagatgcagagaggctaaatcttaaaggtcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggga-aaaagtgca 252  Q
    |||||||||| |  |||||||| ||| |||||||||||||| ||||||||  |||||||| |||||||||| ||||| ||| |||||||| |||||||||    
T  5514263 caaagatgcaaatgggctaaattttagaggtcaaaattgtagtttttgtatttagaaggctaaaattgcaagttttttaaaattaggggataaaagtgca 5514362  T
Q  253 cttta 257  Q
    |||||    
T  5514363 cttta 5514367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 139 - 262
Target Start/End: Original strand, 32207302 - 32207426
Alignment:
Q  139 attgactaaaaagatcaaagatgcagagaggctaaatcttaa-aggtcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt 237  Q
    |||||| |||| || |||||||||| |||||||||||||||| ||| |||||||||| ||||||||| |||   | ||||||||||| ||||| || |||    
T  32207302 attgaccaaaaggaccaaagatgcaaagaggctaaatcttaagaggccaaaattgtagtttttgtacttagggcgtcaaaattgcaagtttttgaaggtt 32207401  T
Q  238 aggggaaaaagtgcactttaacctt 262  Q
    |||||  ||||||||||||| ||||    
T  32207402 aggggggaaagtgcactttagcctt 32207426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 185 - 262
Target Start/End: Complemental strand, 8388539 - 8388462
Alignment:
Q  185 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttaggggaaaaagtgcactttaacctt 262  Q
    ||||||| || |||||||||||||  ||| ||||||||||||||||||||||||||||  ||||||||||||| ||||    
T  8388539 caaaattatagtttttgtacatagggggctaaaattgcaactttttaaaagttaggggggaaagtgcactttagcctt 8388462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 122 - 238
Target Start/End: Original strand, 11283169 - 11283286
Alignment:
Q  122 gcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaatt 220  Q
    |||||||||||||||||||||||||||| |||||||  |||| || |||||||| |||  ||  ||||||||| |||||| |||||||  ||| ||||||    
T  11283169 gcgttgactttgtcaaaattgactaaaatgatcaaaattgcaaaggggctaaattttaggggaccaaaattgtcatttttatacatagggggctaaaatt 11283268  T
Q  221 gcaactttttaaaagtta 238  Q
     ||||||||| |||||||    
T  11283269 acaactttttgaaagtta 11283286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 98 - 249
Target Start/End: Original strand, 2379860 - 2380010
Alignment:
Q  98 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaa-aggtcaaaattgtaat 196  Q
    |||||||||||||||| || | | |||||||||| |||||||||||| ||||  | |||||||||| |   ||||||||||||  || ||||||||| |     
T  2379860 ttacacacatggcatgtcaaataagcgttgacttggtcaaaattgaccaaaagaaccaaagatgcaaatgagctaaatcttaaggggccaaaattgt-ag 2379958  T
Q  197 ttttgtacatagaaggccaaaattgcaactttttaaaagttaggggaaaaagt 249  Q
    ||| ||||||||  |||||||||| ||||||||| ||||||||||| ||||||    
T  2379959 tttcgtacatag-gggccaaaattacaactttttgaaagttagggggaaaagt 2380010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 98 - 262
Target Start/End: Original strand, 22221300 - 22221467
Alignment:
Q  98 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaattgtaat 196  Q
    |||||||| |||||| ||| | | ||||||||   |||||||||| |||||| ||||||||||| | || ||||||||||||   ||||||||||||| |    
T  22221300 ttacacacgtggcataccaaataagcgttgaccaagtcaaaattggctaaaaggatcaaagatgtaaaggggctaaatcttagggggtcaaaattgtagt 22221399  T
Q  197 ttttgtacatagaaggccaaaattgcaactttttaaaagttaggg--gaaaaagtgcactttaacctt 262  Q
    |||  ||| |||  || ||||||||||| ||||| ||||||||||  | |||||||||||||| ||||    
T  22221400 tttaatacttagggggtcaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcctt 22221467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 98 - 262
Target Start/End: Original strand, 22227642 - 22227809
Alignment:
Q  98 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaattgtaat 196  Q
    |||||||| |||||| ||| | | ||||||||   |||||||||| |||||| ||||||||||| | || ||||||||||||   ||||||||||||| |    
T  22227642 ttacacacgtggcataccaaataagcgttgaccaagtcaaaattggctaaaaggatcaaagatgtaaaggggctaaatcttagggggtcaaaattgtagt 22227741  T
Q  197 ttttgtacatagaaggccaaaattgcaactttttaaaagttaggg--gaaaaagtgcactttaacctt 262  Q
    |||  ||| |||  || ||||||||||| ||||| ||||||||||  | |||||||||||||| ||||    
T  22227742 tttaatacttagggggtcaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcctt 22227809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 101 - 257
Target Start/End: Complemental strand, 43661427 - 43661268
Alignment:
Q  101 cacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaattgtaatttt 199  Q
    ||||| |||||||||||| |||||||||||| |||||| ||||| ||||  | |||||||||| || ||||||||||||   || ||||||| || ||||    
T  43661427 cacacgtggcatgccacatatgcgttgacttggtcaaagttgaccaaaagaaccaaagatgcaaaggggctaaatcttagggggccaaaattatagtttt 43661328  T
Q  200 tgtacatagaaggccaaaattgcaactttttaaaagttagggg--aaaaagtgcacttta 257  Q
    ||||||||   | ||||||||| |||||||| ||| ||| |||   ||||||||||||||    
T  43661327 tgtacataagggaccaaaattgtaacttttttaaaattaagggtagaaaagtgcacttta 43661268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 257
Target Start/End: Complemental strand, 10006517 - 10006347
Alignment:
Q  90 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaa 188  Q
    ||||||| |||||||| |||| ||||||  | ||||||| |  |||||||||||| |||| || |||||||||| || ||||||||||||   || ||||    
T  10006517 ttaattaattacacacgtggcctgccacgtaggcgttgaataagtcaaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttagggggccaaa 10006418  T
Q  189 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt--aggggaaaaagtgcacttta 257  Q
    |||||  ||||  ||| |||  |||||||||||||| ||||| ||||||  ||||| ||||||||||||||    
T  10006417 attgttgttttgatacttagggggccaaaattgcaagtttttgaaagttagagggggaaaagtgcacttta 10006347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 257
Target Start/End: Original strand, 10007691 - 10007861
Alignment:
Q  90 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaa 188  Q
    ||||||| |||||||| |||| ||||||  | ||||||| |  |||||||||||| |||| || |||||||||| || ||||||||||||  ||  ||||    
T  10007691 ttaattaattacacacgtggcctgccacgtaggcgttgaataagtcaaaattgacgaaaaggaccaaagatgcaaaggggctaaatcttaggggaccaaa 10007790  T
Q  189 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 257  Q
    |||||  ||| | ||| |||  |||||||||||||| ||||| |||||||  |||| ||||||||||||||    
T  10007791 attgtggtttctatacttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcacttta 10007861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 93 - 261
Target Start/End: Complemental strand, 2379030 - 2378863
Alignment:
Q  93 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaa-aggtcaaaatt 191  Q
    |||| |||||||| || ||||||| | | || |||| || |||||||||||  |||| || |||||||||| | |||||| |||||||  ||||||||||    
T  2379030 attaattacacacgtgacatgccaaataagcattgatttggtcaaaattgatcaaaaggaccaaagatgcaaataggctagatcttaaggggtcaaaatt 2378931  T
Q  192 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagttaggggaaaaagtgcactttaacct 261  Q
     |  |||||||| ||||  |  |||||| | ||||||||||||||||  |||||||||||||||||||||    
T  2378930 atggtttttgtatataggggatcaaaatcgtaactttttaaaagtta--ggaaaaagtgcactttaacct 2378863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 133 - 238
Target Start/End: Original strand, 24123869 - 24123975
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaa-aggtcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||||| |||| || |||||||||| || ||||||||||||  |||  |||||||||||||| |||| ||  ||||||||||||||| |||||     
T  24123869 gtcaaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttaggaggctaaaattgtaattttagtacttaagaggccaaaattgcaagtttttg 24123968  T
Q  232 aaagtta 238  Q
    |||||||    
T  24123969 aaagtta 24123975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 262
Target Start/End: Original strand, 30570227 - 30570358
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||| | |||| || |||||||||| |  ||||||||||||  || | |||||| ||||||||||||||| | |  ||||||||||||||||||    
T  30570227 gtcaaaattggccaaaaggaccaaagatgcaaaagggctaaatcttagggggccaaaattctaatttttgtacata-aggatcaaaattgcaacttttta 30570325  T
Q  232 aaagtt--aggggaaaaagtgcactttaacctt 262  Q
    ||| ||  ||||||||| |||||||||||||||    
T  30570326 aaacttagaggggaaaaggtgcactttaacctt 30570358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 29968364 - 29968436
Alignment:
Q  188 aattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt-aggggaaaaagtgcactttaac 259  Q
    ||||||| ||||||||| |||  |||||||||||||| |||||||||||| ||||| ||||||||||||||||    
T  29968364 aattgtagtttttgtacttagggggccaaaattgcaagtttttaaaagttaagggggaaaagtgcactttaac 29968436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 262
Target Start/End: Complemental strand, 1823627 - 1823550
Alignment:
Q  187 aaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcactttaacctt 262  Q
    |||||||| ||||||||| |||| || ||||||||||| |||||||||||||  ||||||||||| ||||||| ||||    
T  1823627 aaattgtagtttttgtacttagagggtcaaaattgcaagtttttaaaagttaagggggaaaaagtacactttagcctt 1823550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 262
Target Start/End: Complemental strand, 1858072 - 1857995
Alignment:
Q  187 aaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcactttaacctt 262  Q
    |||||||| ||||||||| |||| || ||||||||||| |||||||||||||  ||||||||||| ||||||| ||||    
T  1858072 aaattgtagtttttgtacttagagggtcaaaattgcaagtttttaaaagttaagggggaaaaagtacactttagcctt 1857995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 257
Target Start/End: Complemental strand, 5514111 - 5513985
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggt-caaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||||  |||| || |||||||||| || |||||||| |||  ||  |||||||||| ||||||||| |||  ||||||||||| || |||||     
T  5514111 gtcaaaattgatcaaaaggaccaaagatgcaaaggggctaaattttaggggggcaaaattgtagtttttgtacttagggggccaaaattggaagtttttg 5514012  T
Q  232 aaagtta-ggggaaaaagtgcacttta 257  Q
    ||||||| |||| ||||||||||||||    
T  5514011 aaagttagggggtaaaagtgcacttta 5513985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 242
Target Start/End: Complemental strand, 24123012 - 24122902
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||||| |||| || |||||||||| ||| |||||||||||  || | |||||| || ||||||||| |||  || ||||||||||| |||||     
T  24123012 gtcaaaattgaccaaaaggaccaaagatgcaaagaagctaaatcttaggggactaaaattatagtttttgtacttagggggtcaaaattgcaaatttttt 24122913  T
Q  232 aaagttagggg 242  Q
    |||||||||||    
T  24122912 aaagttagggg 24122902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 168 - 259
Target Start/End: Original strand, 24361199 - 24361292
Alignment:
Q  168 ggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggga-aaaagtgcactttaac 259  Q
    |||||||||||||||| | |||||||||||||||||||||||| | ||||||| | || ||||||||| | | || | ||||||||||||||||    
T  24361199 ggctaaatcttaaaggattaaaattgtaatttttgtacatagaggaccaaaatcgaaattttttaaaaataaaggaagaaaagtgcactttaac 24361292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 133 - 242
Target Start/End: Original strand, 45114488 - 45114597
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaa 232  Q
    ||||||||| || |||| ||| |||| ||||  |||| ||||||||| ||| |||||||||| ||| |||||||||    |||||||||||| ||||| |    
T  45114488 gtcaaaattaaccaaaatgattaaagttgcaatgaggttaaatcttagaggccaaaattgtagtttgtgtacatagtgaaccaaaattgcaagtttttga 45114587  T
Q  233 aagttagggg 242  Q
    ||||||||||    
T  45114588 aagttagggg 45114597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 257
Target Start/End: Complemental strand, 29043528 - 29043401
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||| |||||| |||||||||| || || |||||||||||| | ||  ||||||||| |||||||||||||  || |||||| || |||||||     
T  29043528 gtcaaaattgtctaaaaggatcaaagatacaaaggggctaaatcttagagggaaaaaattgtagtttttgtacatagggggtcaaaatcgcgactttttg 29043429  T
Q  232 aaagttagggga--aaaagtgcacttta 257  Q
    || |||| ||||  ||||||| ||||||    
T  29043428 aaggttaagggaggaaaagtgaacttta 29043401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 133 - 239
Target Start/End: Original strand, 1824049 - 1824156
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||||| |||| || |||||||||| |  ||||||||||||  || | ||||||||| ||||||||| |||  | |||||||||||| |||||     
T  1824049 gtcaaaattgaccaaaaggaccaaagatgcaaaatggctaaatcttagggggccaaaattgtagtttttgtacttaggggaccaaaattgcaagtttttg 1824148  T
Q  232 aaagttag 239  Q
    ||||||||    
T  1824149 aaagttag 1824156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 133 - 239
Target Start/End: Original strand, 1858494 - 1858601
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||||| |||| || |||||||||| |  ||||||||||||  || | ||||||||| ||||||||| |||  | |||||||||||| |||||     
T  1858494 gtcaaaattgaccaaaaggaccaaagatgcaaaatggctaaatcttagggggccaaaattgtagtttttgtacttaggggaccaaaattgcaagtttttg 1858593  T
Q  232 aaagttag 239  Q
    ||||||||    
T  1858594 aaagttag 1858601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 185 - 257
Target Start/End: Complemental strand, 11287853 - 11287779
Alignment:
Q  185 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttaggg--gaaaaagtgcacttta 257  Q
    |||||||||| ||| ||||| |||  |||||||||||||| ||||| ||||||||||  ||||||||||||||||    
T  11287853 caaaattgtagtttctgtacttagtgggccaaaattgcaagttttttaaagttaggggtgaaaaagtgcacttta 11287779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 98 - 257
Target Start/End: Complemental strand, 22220553 - 22220391
Alignment:
Q  98 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaat 196  Q
    |||||||| |||||||||| |   || |||||||  ||||||||||  |||| || |||||||||| |  ||||||||||||  || | ||||||||| |    
T  22220553 ttacacacgtggcatgccaaatcagcattgacttgctcaaaattgatcaaaaggaccaaagatgcaaatgggctaaatcttagggggccaaaattgtagt 22220454  T
Q  197 ttttgtacatagaaggccaaaattgcaactttttaaaagtt--aggggaaaaagtgcacttta 257  Q
    |||| |||||||  || ||||||||||| | ||| ||||||  ||||| ||||||||||||||    
T  22220453 ttttatacatagggggtcaaaattgcaagtattttaaagttagagggggaaaagtgcacttta 22220391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 115 - 262
Target Start/End: Original strand, 40471100 - 40471249
Alignment:
Q  115 cacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggc 213  Q
    ||||| ||| ||||||  |||||||||||| |||| || ||||||| || ||||| |||||||||| || | ||||||||| ||||||||  ||   | |    
T  40471100 cacacgtgcattgactcggtcaaaattgaccaaaatgaccaaagatacaaagaggttaaatcttaaggggctaaaattgtagtttttgtattta-tggac 40471198  T
Q  214 caaaattgcaactttttaaaagtt--aggggaaaaagtgcactttaacctt 262  Q
    |||||||| || ||||| ||||||  ||||| |||||||||||||||||||    
T  40471199 caaaattgtaagttttttaaagttaaagggggaaaagtgcactttaacctt 40471249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 242
Target Start/End: Complemental strand, 18978149 - 18978039
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    ||||||||||   |||| |||||||| |||| || ||||||||||||| || | ||||||||| ||||||||| |||  ||||||||||| ||  ||||     
T  18978149 gtcaaaattggaaaaaaggatcaaagttgcaaaggggctaaatcttaaggggccaaaattgtagtttttgtacttagggggccaaaattgaaagattttg 18978050  T
Q  232 aaagttagggg 242  Q
    |||||||||||    
T  18978049 aaagttagggg 18978039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 246
Target Start/End: Complemental strand, 40469509 - 40469356
Alignment:
Q  94 ttatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaattg 192  Q
    |||||||||||  || ||||||||||||| ||| |||| |||||||||||  ||||  | ||||||| || || | ||||||||||   ||| |||||||    
T  40469509 ttatttacacatgtgacatgccacacatgtgtttacttggtcaaaattgatcaaaagaaccaaagatacaaagggactaaatcttatgtggttaaaattg 40469410  T
Q  193 taatttttgtacatagaaggccaaaattgcaactttttaaaagttaggggaaaa 246  Q
    |||||||||||  |||| |   |||||| ||| ||||| ||||||| |||||||    
T  40469409 taatttttgtatttagaggatgaaaattacaaatttttgaaagttaagggaaaa 40469356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 186 - 261
Target Start/End: Original strand, 8389714 - 8389791
Alignment:
Q  186 aaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcactttaacct 261  Q
    ||||||||| ||||||||||||   | |||||||||||||||||| ||| |||   ||| ||||||||||||||||||    
T  8389714 aaaattgtagtttttgtacataagggaccaaaattgcaactttttgaaacttaagaggggaaaagtgcactttaacct 8389791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 12353396 - 12353462
Alignment:
Q  197 ttttgtacatagaaggccaaaattgcaactttttaaaagtt-aggggaaaaagtgcactttaacctt 262  Q
    |||||||| |||  |||||||||||||| ||||| |||||| ||||| |||||||||||||| ||||    
T  12353396 ttttgtacttagggggccaaaattgcaagtttttgaaagttaagggggaaaagtgcactttagcctt 12353462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 133 - 242
Target Start/End: Complemental strand, 18971040 - 18970930
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||| | |||| || ||||| |||| || || |||||||| | || ||||||||||| ||||||||| |||  ||||||||||| ||  ||||     
T  18971040 gtcaaaattggcaaaaaggaccaaagttgcaaaggggttaaatcttcaggggtcaaaattgtagtttttgtacttagggggccaaaattgaaagattttg 18970941  T
Q  232 aaagttagggg 242  Q
    |||||||||||    
T  18970940 aaagttagggg 18970930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 190 - 257
Target Start/End: Complemental strand, 36249624 - 36249555
Alignment:
Q  190 ttgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 257  Q
    |||| |||||| | ||||| ||||||||||||||||||||| ||| |||  |||| ||||||||||||||    
T  36249624 ttgtcatttttattcataggaggccaaaattgcaactttttgaaacttaaggggggaaaagtgcacttta 36249555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 3208206 - 3208263
Alignment:
Q  185 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggg 242  Q
    ||||||||| |||||| || |||| |||| ||||| |||||||||||||| |||||||    
T  3208206 caaaattgttatttttttaaataggaggctaaaatcgcaactttttaaaacttagggg 3208263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 12352018 - 12351945
Alignment:
Q  166 gaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta 238  Q
    ||||||||||||||  || ||||||||||| ||||||||| |||  || ||||||||||| ||||| |||||||    
T  12352018 gaggctaaatcttagggggtcaaaattgtagtttttgtacttagggggtcaaaattgcaaatttttgaaagtta 12351945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 257
Target Start/End: Original strand, 18979090 - 18979218
Alignment:
Q  132 tgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttt 230  Q
    ||||||||||| | |||| |||||||| |||| |  ||||||||| ||| || | ||||||||| ||||| ||  |||  |||||||||||||| || ||    
T  18979090 tgtcaaaattggcaaaaaggatcaaagttgcaaatgggctaaatcataaggggccaaaattgtagtttttatatttagggggccaaaattgcaagttgtt 18979189  T
Q  231 aaaagtta--ggggaaaaagtgcacttta 257  Q
     |||||||  |||| ||||||||||||||    
T  18979190 gaaagttagggggggaaaagtgcacttta 18979218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 102 - 257
Target Start/End: Original strand, 22940563 - 22940720
Alignment:
Q  102 acacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtcaaaattgtaatttttg 201  Q
    |||| |||||||||||  | |||||||||| |||||||||||| |||| ||| ||||||| | || |||||||| |||  ||||||||||||||||||||    
T  22940563 acacgtggcatgccacttaggcgttgacttggtcaaaattgaccaaaaggataaaagatgaaaaggggctaaattttaggggtcaaaattgtaatttttg 22940662  T
Q  202 tacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 257  Q
    ||| |||  |||||||||||||| ||||| |||||||  |||| ||||||||||||||    
T  22940663 tacttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcacttta 22940720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 98 - 258
Target Start/End: Complemental strand, 42195297 - 42195136
Alignment:
Q  98 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaat 196  Q
    |||||||| |||||||||| |   |||||||||| |||||||||||| |||| || |||||||||| || ||||||||||||  || | |||||||||      
T  42195297 ttacacacgtggcatgccaaatcagcgttgacttggtcaaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttaggggaccaaaattgtaga 42195198  T
Q  197 ttttgtacatagaaggccaaaattgcaactttttaaaagttaggggaaaaagtgcactttaa 258  Q
    ||||||||||||  ||||||||| |||||||||||||  | ||||| |||||||||||||||    
T  42195197 ttttgtacatagggggccaaaatcgcaactttttaaagttaagggggaaaagtgcactttaa 42195136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 93 - 204
Target Start/End: Complemental strand, 16650162 - 16650050
Alignment:
Q  93 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaatt 191  Q
    ||||||||||||| ||||||||||||||||| ||||||| |||||||||||| |||| || |||||||||| || || ||||||||| | ||||||||||    
T  16650162 attatttacacacgtggcatgccacacatgcattgacttggtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttagagggtcaaaatt 16650063  T
Q  192 gtaatttttgtac 204  Q
    ||| |||||||||    
T  16650062 gtagtttttgtac 16650050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 98 - 262
Target Start/End: Complemental strand, 24333077 - 24332911
Alignment:
Q  98 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaat 196  Q
    |||||||| |||||||||||  | || ||||||  |||||||||||| |||| || |||||||||| || || ||||||||| ||| ||||||||||| |    
T  24333077 ttacacacgtggcatgccacgtaggcattgactg-gtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttagagggtcaaaattgtagt 24332979  T
Q  197 ttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcactttaacctt 262  Q
    |||||||||||   |||||||||||||| ||||| ||| |||  ||||||||||||||||||||||||    
T  24332978 ttttgtacataaggggccaaaattgcaagtttttgaaacttaagggggaaaaagtgcactttaacctt 24332911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 93 - 257
Target Start/End: Original strand, 16650786 - 16650953
Alignment:
Q  93 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaatt 191  Q
    |||| |||||||| |||||||||||||||||||||||||  ||||||||||| |||| || |||||||||| |  ||||||| ||||  || | ||||||    
T  16650786 attaattacacacgtggcatgccacacatgcgttgacttgatcaaaattgaccaaaaggaccaaagatgcaaatgggctaaaccttagggggctaaaatt 16650885  T
Q  192 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 257  Q
    ||| ||||| ||| |||  || ||||||||||| |||||||||||||  || | ||||||||||||||    
T  16650886 gtagtttttatacttagggggtcaaaattgcaagtttttaaaagttaagggtggaaaagtgcacttta 16650953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 90 - 257
Target Start/End: Complemental strand, 25523242 - 25523072
Alignment:
Q  90 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaa 188  Q
    ||||||| |||||||| ||||| |||||  | ||||||| |   ||||||||||  |||| ||||||||||||| || ||||||||||||  || |||||    
T  25523242 ttaattaattacacacgtggcaggccacgtaggcgttgaataaatcaaaattgatcaaaaggatcaaagatgcaaaggggctaaatcttagggggtcaaa 25523143  T
Q  189 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 257  Q
    |||||| ||||||||| |||  ||| |||||||||| ||||| |||||||  |||| ||||||||||||||    
T  25523142 attgtagtttttgtacttagggggctaaaattgcaagtttttgaaagttaaggggggaaaagtgcacttta 25523072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 133 - 257
Target Start/End: Complemental strand, 2186900 - 2186774
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||||| |||| || |||||||| | |  ||||||||||||  || | ||||||||| |||||||||||||||| ||||||||||||||||||     
T  2186900 gtcaaaattgaccaaaaggaccaaagatgtaaaatggctaaatcttaggggattaaaattgtagtttttgtacatagaagaccaaaattgcaactttttg 2186801  T
Q  232 aaagtta-ggggaaaaagtgcacttta 257  Q
    ||| ||| ||||||||| |||||||||    
T  2186800 aaacttagggggaaaaaatgcacttta 2186774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 90 - 262
Target Start/End: Complemental strand, 19753084 - 19752910
Alignment:
Q  90 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaa 188  Q
    ||||||| |||||||| |||| ||||||  | ||||||| |  |||||||||||| |||| || ||||||||||  | ||||||||| ||  || | |||    
T  19753084 ttaattaattacacacgtggcctgccacgtaggcgttgaataagtcaaaattgaccaaaaggaccaaagatgcaatggggctaaatcatagggggccaaa 19752985  T
Q  189 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta-ggggaaaaagtgcactttaacctt 262  Q
    |||||| ||||||||| |||  |||||||||||||| ||||| ||||||| |||| |||||||||||||| ||||    
T  19752984 attgtagtttttgtacttagggggccaaaattgcaagtttttgaaagttaggggggaaaagtgcactttagcctt 19752910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 122 - 242
Target Start/End: Original strand, 42196160 - 42196281
Alignment:
Q  122 gcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaatt 220  Q
    |||||||||| |||||||||||| |||| || |||||||||| |  ||||||||||||  || | |||| |||| |||||||||||||| ||||||| |     
T  42196160 gcgttgacttggtcaaaattgaccaaaaggaccaaagatgcaaatgggctaaatcttaggggactaaaaatgtagtttttgtacatagagggccaaattc 42196259  T
Q  221 gcaactttttaaaagttagggg 242  Q
     |||||||||||||||||||||    
T  42196260 acaactttttaaaagttagggg 42196281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 133 - 262
Target Start/End: Original strand, 28539791 - 28539922
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||| | |||| |||||||| |||| || | ||||||||||  || | ||||||||| ||||||||| |||| || ||||||||||| ||||||    
T  28539791 gtcaaaattggcaaaaaggatcaaagttgcaaagggactaaatcttaggggaccaaaattgtagtttttgtacttagagggtcaaaattgcaagttttta 28539890  T
Q  232 aaagtta-ggggaaaaagtgcactttaacctt 262  Q
    ||||||| |||| |||| ||||||||||||||    
T  28539891 aaagttaggggggaaaaatgcactttaacctt 28539922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 133 - 255
Target Start/End: Original strand, 36486459 - 36486584
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||||| |||| |||||||| |||| || | ||||||||||  || | ||||||||| ||||||||| |||  || ||||||||||| ||||||    
T  36486459 gtcaaaattgacaaaaaggatcaaagttgcaaagggactaaatcttaggggaccaaaattgtagtttttgtacttagggggtcaaaattgcaagttttta 36486558  T
Q  232 aaagtta--ggggaaaaagtgcactt 255  Q
    |||||||  |||||||||||||||||    
T  36486559 aaagttaggggggaaaaagtgcactt 36486584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 261
Target Start/End: Original strand, 1016885 - 1016965
Alignment:
Q  183 gtcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggg--aaaaagtgcactttaacct 261  Q
    |||||||||||| |||||||||||||||| |||||||| ||| ||||||||| |||||||  ||||| | |||||||||||    
T  1016885 gtcaaaattgtagtttttgtacatagaagaccaaaattacaattttttaaaaattagggggaaaaaaatacactttaacct 1016965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 257
Target Start/End: Original strand, 18486830 - 18487000
Alignment:
Q  90 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaa 188  Q
    ||||||| |||||||| |||| ||||||  | ||||||| |  |||||||||||| |||| || |||||||||| || ||||||||||||   || ||||    
T  18486830 ttaattaattacacacgtggcctgccacgtaggcgttgaataagtcaaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttagggggccaaa 18486929  T
Q  189 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 257  Q
    |||||  ||| | ||| |||  |||||||||||||| ||||| |||||||  ||||  |||||||||||||    
T  18486930 attgtggtttctatacttagggggccaaaattgcaagtttttgaaagttaagggggggaaagtgcacttta 18487000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 185 - 257
Target Start/End: Complemental strand, 20214272 - 20214199
Alignment:
Q  185 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt-aggggaaaaagtgcacttta 257  Q
    |||||||||| ||||||||||||||  || |||||||||| ||||| |||||| ||||| ||||||||||||||    
T  20214272 caaaattgtagtttttgtacatagagtgctaaaattgcaagtttttgaaagttaagggggaaaagtgcacttta 20214199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 221
Target Start/End: Original strand, 25524026 - 25524158
Alignment:
Q  90 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaa 188  Q
    ||||||| |||||||| |||  ||||||  | ||||||| |  |||||||||||| |||| ||  ||||||||| || ||||||||||||   |||||||    
T  25524026 ttaattaattacacacgtggtctgccacgtaggcgttgaataagtcaaaattgaccaaaaggactaaagatgcaaaggggctaaatcttagggggtcaaa 25524125  T
Q  189 attgtaatttttgtacatagaaggccaaaattg 221  Q
    ||| || ||||||||| ||| ||||||||||||    
T  25524126 attatagtttttgtacttaggaggccaaaattg 25524158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 257
Target Start/End: Complemental strand, 28538806 - 28538679
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||||| |||| |||||||| |||| || ||||||||||||  || | ||||||||| ||||||||| ||   || ||||||||||| |||||     
T  28538806 gtcaaaattgacaaaaaggatcaaagttgcaaaggggctaaatcttagggggctaaaattgtagtttttgtacttaaggggtcaaaattgcaagtttttg 28538707  T
Q  232 aaagtta--ggggaaaaagtgcacttta 257  Q
    |||||||  || | ||||||||||||||    
T  28538706 aaagttacgggtggaaaagtgcacttta 28538679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 141 - 262
Target Start/End: Complemental strand, 21835162 - 21835039
Alignment:
Q  141 tgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttag 239  Q
    ||||||||| |||||||| |||| || || |||||||||  || ||||||||||| |||||||||||||  || ||||||  ||||||||| ||| ||||    
T  21835162 tgactaaaaggatcaaagttgcaaaggggttaaatcttagggggtcaaaattgtagtttttgtacatagggggtcaaaatcacaactttttcaaacttag 21835063  T
Q  240 -gggaaaaagtgcactttaacctt 262  Q
     |||  ||||||||||||| ||||    
T  21835062 agggggaaagtgcactttagcctt 21835039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 262
Target Start/End: Complemental strand, 18485318 - 18485136
Alignment:
Q  90 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctt--------aaa 181  Q
    ||||||| |||||||| |||| ||||||  | ||||||| |  ||||||||| || |||| ||||||||||||| || |||||||||||        |||    
T  18485318 ttaattaattacacacgtggcctgccacgtaggcgttgaataagtcaaaattaaccaaaaggatcaaagatgcaaaggggctaaatcttagggggccaaa 18485219  T
Q  182 ggtcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt--aggggaaaaagtgcactttaacctt 262  Q
       |||||||||  ||||  ||| |||  |||||||||||||| ||||| ||||||  |||||||||||||||||||| ||||    
T  18485218 acccaaaattgttgttttgatacttagggggccaaaattgcaagttttttaaagttagaggggaaaaagtgcactttagcctt 18485136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 1015560 - 1015503
Alignment:
Q  186 aaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggga 243  Q
    |||||||||  ||||||||| ||  ||||||||||| |||||||||||||||||||||    
T  1015560 aaaattgtaggttttgtacacagggggccaaaattgtaactttttaaaagttagggga 1015503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 260
Target Start/End: Complemental strand, 38834162 - 38834087
Alignment:
Q  186 aaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcactttaacc 260  Q
    ||||||||| |||||||||||| | || |||||| ||||||||||||||||||  ||| ||||| ||||||||||||    
T  38834162 aaaattgtagtttttgtacata-agggtcaaaatcgcaactttttaaaagttaaggggaaaaaaatgcactttaacc 38834087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 186 - 257
Target Start/End: Original strand, 21834944 - 21835016
Alignment:
Q  186 aaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta-ggggaaaaagtgcacttta 257  Q
    ||||||||| ||||||| ||||||||| |||| |||||||||||| ||| |||  ||| ||||||||||||||    
T  21834944 aaaattgtagtttttgttcatagaaggtcaaatttgcaactttttcaaacttataggggaaaagtgcacttta 21835016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 240
Target Start/End: Original strand, 25056316 - 25056460
Alignment:
Q  98 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcaga-gaggctaaatcttaaagg-tcaaaattgtaa 195  Q
    |||||||| |||||||||| | | ||||||||   |||||||||| ||||||  | |||||||| | | ||||||||||||||  || |||||||||||     
T  25056316 ttacacacgtggcatgccaaataagcgttgaccaagtcaaaattggctaaaacaaccaaagatgtaaatgaggctaaatcttagggggtcaaaattgtag 25056415  T
Q  196 tttttgtacatagaaggccaaaattgcaactttttaaaagttagg 240  Q
    ||||  ||| |||  || ||||||||||| ||||| |||||||||    
T  25056416 ttttaatacttagggggtcaaaattgcaagtttttgaaagttagg 25056460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 261
Target Start/End: Original strand, 2686329 - 2686505
Alignment:
Q  90 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaa 188  Q
    ||||||| ||||||||||||| ||  ||  | ||||||| |  |||||||||||  |||| || ||||||||||  ||||||||||| ||  || | |||    
T  2686329 ttaattaattacacacatggcctgatacgtaggcgttgaataagtcaaaattgatcaaaaggaccaaagatgcaatgaggctaaatcataggggaccaaa 2686428  T
Q  189 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttag----gggaaaaagtgcactttaacct 261  Q
    ||| || ||||||||| ||  ||  ||||||||||| ||||||||||||||    |||  |||||||||||||||||    
T  2686429 attatagtttttgtacttaagagatcaaaattgcaagtttttaaaagttagaggagggggaaagtgcactttaacct 2686505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 33158178 - 33158096
Alignment:
Q  182 ggtcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggg--aaaaagtgcactttaacctt 262  Q
    ||||||||||||| ||||||||| |||   | ||||||||||| ||||| |||||||||||  ||||| ||||||||| ||||    
T  33158178 ggtcaaaattgtagtttttgtacttagggtgtcaaaattgcaagtttttgaaagttagggggaaaaaaatgcactttagcctt 33158096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 1796132 - 1796074
Alignment:
Q  184 tcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggg 242  Q
    ||||||||||| ||||||||| |||  ||||||| |||||| ||||| |||||||||||    
T  1796132 tcaaaattgtagtttttgtacttaggtggccaaagttgcaagtttttgaaagttagggg 1796074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 133 - 242
Target Start/End: Complemental strand, 36485430 - 36485320
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||||| |||| |||||||| |||| || || |||||||||   || ||||||| || ||||||||| ||  ||| |||||||| || |||||     
T  36485430 gtcaaaattgacaaaaatgatcaaagttgcaaaggggttaaatcttagggggccaaaattatagtttttgtacttaagaggtcaaaattgtaagtttttt 36485331  T
Q  232 aaagttagggg 242  Q
    |||||||||||    
T  36485330 aaagttagggg 36485320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 19754154 - 19754211
Alignment:
Q  185 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggg 242  Q
    |||||||||| ||||||||  |||  |||||||||||||| ||||| |||||||||||    
T  19754154 caaaattgtagtttttgtatttagggggccaaaattgcaagtttttgaaagttagggg 19754211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 34893739 - 34893686
Alignment:
Q  188 aattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttaggg 241  Q
    ||||||| |||||||||||||   ||||||||||||| ||||| ||||||||||    
T  34893739 aattgtagtttttgtacatagggagccaaaattgcaagtttttgaaagttaggg 34893686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 7311666 - 7311610
Alignment:
Q  186 aaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggg 242  Q
    ||||||||| ||||||||| | | ||||||| ||||||| ||||| |||||||||||    
T  7311666 aaaattgtagtttttgtacttgggaggccaatattgcaagtttttgaaagttagggg 7311610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 133 - 257
Target Start/End: Original strand, 33160258 - 33160384
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||| |||||| ||| |||| ||||  | ||||||||||||| || ||||||||||| ||| | ||| |||  ||| |||||||||| |||||     
T  33160258 gtcaaaattggctaaaaggattaaagttgcaatg-ggctaaatcttaaggggtcaaaattgtagtttctatacttagggggctaaaattgcaagtttttg 33160356  T
Q  232 aaagtta--ggggaaaaagtgcacttta 257  Q
    ||| |||  |||| ||||||||||||||    
T  33160357 aaaattaaggggggaaaagtgcacttta 33160384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 8e-29; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 95 - 262
Target Start/End: Original strand, 43378646 - 43378815
Alignment:
Q  95 tatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaattgt 193  Q
    ||||||||||| |||||||||||| |||||||||||| |||||||| ||| |||| ||| ||||||||| ||  |||||||||||   ||||||||||||    
T  43378646 tatttacacacgtggcatgccacatatgcgttgacttggtcaaaatcgaccaaaaggattaaagatgcaaaggtgctaaatcttaggtggtcaaaattgt 43378745  T
Q  194 aatttttgtacatagaaggccaaaattgcaactttttaaaagttagggga-aaaagtgcactttaacctt 262  Q
    ||||||||||| |||  |  |||||||| || ||||| ||||||| | || |||||||||||||||||||    
T  43378746 aatttttgtacttaggggatcaaaattgtaagtttttgaaagttaagagagaaaagtgcactttaacctt 43378815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 93 - 262
Target Start/End: Complemental strand, 52275138 - 52274966
Alignment:
Q  93 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaatt 191  Q
    ||||||||||||| ||||||||||| || ||||||||| ||||||||||||| |||| |||||||  ||||  ||||||||||||||  ||  |||||||    
T  52275138 attatttacacacttggcatgccacgcaggcgttgactatgtcaaaattgaccaaaaggatcaaatttgcaatgaggctaaatcttaggggcccaaaatt 52275039  T
Q  192 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcactttaacctt 262  Q
    ||| ||||||||| |||  || ||||||||||| ||||| |||||||  |||| |||||||||||||| ||||    
T  52275038 gtagtttttgtacttagggggtcaaaattgcaagtttttgaaagttaggggggtaaaagtgcactttagcctt 52274966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 93 - 257
Target Start/End: Complemental strand, 24422970 - 24422803
Alignment:
Q  93 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaatt 191  Q
    ||||||||||||| |||||||||||||| ||||||||| ||||||||||||| |||| |||||||  ||||  | ||||||||||||   || |||||||    
T  24422970 attatttacacacgtggcatgccacacaggcgttgactatgtcaaaattgaccaaaaggatcaaatttgcaatggggctaaatcttagggggccaaaatt 24422871  T
Q  192 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 257  Q
    ||| ||||||||| |||  || ||||||||||| ||||| |||||||  |||| ||||||||||||||    
T  24422870 gtagtttttgtacttagggggtcaaaattgcaagtttttgaaagttaagggggtaaaagtgcacttta 24422803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 98 - 262
Target Start/End: Original strand, 39153053 - 39153219
Alignment:
Q  98 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaat 196  Q
    |||||||| |||||||||||  | || ||||||  |||||||||||| |||| || |||||||||| || || ||||||||| ||| ||||||||||| |    
T  39153053 ttacacacgtggcatgccacgtaggcattgactg-gtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttagagggtcaaaattgtagt 39153151  T
Q  197 ttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcactttaacctt 262  Q
    |||||||||||   |||||||||||||| ||||| ||| |||  ||||||||||||||||||||||||    
T  39153152 ttttgtacataaggggccaaaattgcaagtttttgaaacttaagggggaaaaagtgcactttaacctt 39153219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 122 - 257
Target Start/End: Complemental strand, 51684507 - 51684369
Alignment:
Q  122 gcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaatt 220  Q
    |||||||||| |||||||||| | |||| || |||||||||| || ||||||||||||  || | ||||||||| ||||| |||||||  ||||||||||    
T  51684507 gcgttgacttggtcaaaattggccaaaaggaccaaagatgcaaaggggctaaatcttagggggccaaaattgtagtttttatacatagggggccaaaatt 51684408  T
Q  221 gcaactttttaaaagtta--ggggaaaaagtgcacttta 257  Q
    ||||||||||||||||||  |||| ||||||||||||||    
T  51684407 gcaactttttaaaagttaaggggggaaaagtgcacttta 51684369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 133 - 261
Target Start/End: Complemental strand, 39152061 - 39151930
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaag-gtcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||||| |||| || |||||||||| || || |||||||||||| |||||||||||| |||||||||||||  |||||||||| ||| |||||     
T  39152061 gtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttaaagagtcaaaattgtagtttttgtacatagggggccaaaattacaagtttttg 39151962  T
Q  232 aaagtta--ggggaaaaagtgcactttaacct 261  Q
    ||| |||  ||||||||| |||||||||||||    
T  39151961 aaacttaagggggaaaaaatgcactttaacct 39151930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 133 - 262
Target Start/End: Original strand, 45157180 - 45157311
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||||| |||| || |||||||||| || || ||||||||||||| ||||||||||| |||||||||||||  |||||||||||||| |||||     
T  45157180 gtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttaaagggtcaaaattgtagtttttgtacatagggggccaaaattgcaagtttttg 45157279  T
Q  232 aaagtta-ggggaaaaagtgcactttaacctt 262  Q
    ||| ||| ||||  ||||||||||||| ||||    
T  45157280 aaacttagggggggaaagtgcactttagcctt 45157311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 122 - 257
Target Start/End: Original strand, 51685725 - 51685863
Alignment:
Q  122 gcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaatt 220  Q
    ||||||| || || ||||||| | |||| || |||||||||| || ||||||||||||  || ||||||||||| |||||||||||||| |||||||||     
T  51685725 gcgttgaattggttaaaattggccaaaaggaccaaagatgcaaaggggctaaatcttagggggtcaaaattgtagtttttgtacatagagggccaaaatc 51685824  T
Q  221 gcaactttttaaaagtt--aggggaaaaagtgcacttta 257  Q
    |||||||||| ||||||  ||||| ||||||||||||||    
T  51685825 gcaactttttgaaagttagagggggaaaagtgcacttta 51685863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 133 - 261
Target Start/End: Complemental strand, 43058915 - 43058785
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||||| |||| ||||||||||| | || |||||||||||| ||| | ||||||||| ||||||||| |||  || ||||||||||| |||||     
T  43058915 gtcaaaattgaccaaaaggatcaaagatgtaaaggggctaaatcttagagggctaaaattgtagtttttgtacttagggggtcaaaattgcaagtttttc 43058816  T
Q  232 aaagtta-ggggaaaaagtgcactttaacct 261  Q
    ||||||| |||||||||||| ||||||||||    
T  43058815 aaagttagggggaaaaagtgtactttaacct 43058785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 93 - 234
Target Start/End: Complemental strand, 43377890 - 43377748
Alignment:
Q  93 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaatt 191  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||| |||||||| || | |||| |||||| |||  ||| |||||||    
T  43377890 attatttacacacgtggcatgccacacatgcgttgacttggtcaaaattgaccaaaaggatcaaaggtgtaaagagactaaattttaggaggccaaaatt 43377791  T
Q  192 gtaatttttgtacatagaaggccaaaattgcaactttttaaaa 234  Q
     |||||||| ||| || | | | |||||||||| | |||||||    
T  43377790 ataatttttatacttaaaggactaaaattgcaagtgtttaaaa 43377748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 90 - 257
Target Start/End: Original strand, 36613832 - 36614002
Alignment:
Q  90 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaa 188  Q
    ||||||| |||||||| |||| ||||||  | ||||||| |  |||||||||||  |||| ||  |||| |||| |||||||||||||||  || |||||    
T  36613832 ttaattaattacacacgtggcctgccacgtaggcgttgaataagtcaaaattgatcaaaaggactaaagttgcaaagaggctaaatcttagggggtcaaa 36613931  T
Q  189 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggga--aaaagtgcacttta 257  Q
    |||||| ||||||||| |||  |||||||||| ||| ||||||||||||||||||  |||| |||||||||    
T  36613932 attgtagtttttgtacttagggggccaaaattacaagtttttaaaagttaggggaggaaaaatgcacttta 36614002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 133 - 258
Target Start/End: Complemental strand, 45156179 - 45156051
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||||| ||||||| ||||||| || ||||| ||||||||| ||| | ||||||||| ||||||||||||||||| |||||||| || |||||     
T  45156179 gtcaaaattgaccaaaaagaccaaagatacaaagaggttaaatcttagagggttaaaattgtagtttttgtacatagaaggtcaaaattgtaagtttttg 45156080  T
Q  232 aaagttagggga--aaaagtgcactttaa 258  Q
    ||| ||| ||||  ||||||| |||||||    
T  45156079 aaacttaagggaggaaaagtgaactttaa 45156051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 122 - 255
Target Start/End: Complemental strand, 46066663 - 46066530
Alignment:
Q  122 gcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtcaaaattgtaatttttgtacatagaaggccaaaattg 221  Q
    ||||||| || |||||||||||  |||||||||| ||||||| |  ||||||||||||  ||  ||||||||| ||||||||||||   ||| ||||| |    
T  46066663 gcgttgagttggtcaaaattgatcaaaaagatcagagatgcaaattggctaaatcttaggggctaaaattgtagtttttgtacataaggggctaaaatcg 46066564  T
Q  222 caactttttaaaagttaggggaaaaagtgcactt 255  Q
    ||||||||| ||||||||| | ||||||||||||    
T  46066563 caactttttgaaagttaggaggaaaagtgcactt 46066530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 90 - 262
Target Start/End: Complemental strand, 11436215 - 11436040
Alignment:
Q  90 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaa 188  Q
    ||||||| |||||||  |||||||||||  | |||||||||  |||||||||||| ||||  | |||||||||| |  || |||||||||  || | |||    
T  11436215 ttaattaattacacatgtggcatgccacttaggcgttgactcggtcaaaattgaccaaaagaaccaaagatgcaaatgggttaaatcttagggggccaaa 11436116  T
Q  189 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt--aggggaaaaagtgcactttaacctt 262  Q
    |||||| ||||| ||| || |||||||||||||||| ||||| ||||||  ||||| |||||||||||||| ||||    
T  11436115 attgtagtttttatacttaaaaggccaaaattgcaagtttttgaaagttaaagggggaaaagtgcactttagcctt 11436040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 98 - 262
Target Start/End: Complemental strand, 35594380 - 35594215
Alignment:
Q  98 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtcaaaattgtaatt 197  Q
    |||||||| |||||||||| | | ||||||||   |||||||||| |||||| || |||||||||| || |||||||| |||  ||||||||||||| ||    
T  35594380 ttacacacgtggcatgccaaataagcgttgaccaagtcaaaattggctaaaaggaccaaagatgcaaaggggctaaattttaggggtcaaaattgtagtt 35594281  T
Q  198 tttgtacatagaaggccaaaattgcaactttttaaaagttaggg--gaaaaagtgcactttaacctt 262  Q
    ||  ||| |||  || ||||||||||| ||||| ||||||||||  | |||||||||||||| ||||    
T  35594280 ttaatacttag-gggtcaaaattgcaagtttttgaaagttaggggtggaaaagtgcactttagcctt 35594215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 93 - 262
Target Start/End: Original strand, 24426007 - 24426178
Alignment:
Q  93 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaatt 191  Q
    ||||||||||| | ||||||||||  || |||||||||  |||||||||||| ||||  ||||||  ||||  | ||||||||||||  || | ||||||    
T  24426007 attatttacacgc-tggcatgccatgcaagcgttgactaggtcaaaattgaccaaaagtatcaaatttgcaatggggctaaatcttaggggactaaaatt 24426105  T
Q  192 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt--aggggaaaaagtgcactttaacctt 262  Q
    ||| ||||||||| |||  |||||||||||||| ||||| ||||||  |||||  ||||||||||||||||||    
T  24426106 gtagtttttgtacttagggggccaaaattgcaagtttttgaaagttagaggggggaaagtgcactttaacctt 24426178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 122 - 238
Target Start/End: Original strand, 30249450 - 30249567
Alignment:
Q  122 gcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaatt 220  Q
    |||||||||  |||||||||||  ||||||||||||||| || |   |||||||||||| || ||||||||||| |||||||||||| |||  |||||||    
T  30249450 gcgttgactaagtcaaaattgatcaaaaagatcaaagatacaaatgagctaaatcttaaggggtcaaaattgtagtttttgtacataaaagatcaaaatt 30249549  T
Q  221 gcaactttttaaaagtta 238  Q
     ||||||||| |||||||    
T  30249550 acaactttttgaaagtta 30249567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 133 - 260
Target Start/End: Complemental strand, 40384855 - 40384724
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||| | |||| || |||||||||| ||||||||||| |||  || ||||||||||| ||||||||||||| || | ||||||||||||||||     
T  40384855 gtcaaaattggccaaaaggaccaaagatgcaaagaggctaaattttaggggatcaaaattgtagtttttgtacataggagactaaaattgcaactttttg 40384756  T
Q  232 aaagtta---ggggaaaaagtgcactttaacc 260  Q
    ||| |||    || ||||||||||||||||||    
T  40384755 aaaattaaagaggaaaaaagtgcactttaacc 40384724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 133 - 261
Target Start/End: Original strand, 45149941 - 45150072
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggt--caaaattgtaatttttgtacatagaaggccaaaattgcaacttttt 230  Q
    |||||||||| | |||| ||||||||||||| || ||||||||||||  ||   |||||||||  ||||||||| ||   |||||||||||||| |||||    
T  45149941 gtcaaaattggccaaaaggatcaaagatgcaaaggggctaaatcttagggggggcaaaattgttgtttttgtacttaaggggccaaaattgcaagttttt 45150040  T
Q  231 aaaagtta-ggggaaaaagtgcactttaacct 261  Q
     ||||||| |||| ||||||||||||||||||    
T  45150041 gaaagttaggggggaaaagtgcactttaacct 45150072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 257
Target Start/End: Original strand, 11437139 - 11437297
Alignment:
Q  102 acacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaattgtaattttt 200  Q
    |||| |||||||||||  | |||||||||  |||||||||||| |||| ||||||||||| | |  || |||||||||   || |||||||||| |||||    
T  11437139 acacgtggcatgccacttaagcgttgactcggtcaaaattgaccaaaaggatcaaagatgtaaaagggttaaatcttagggggccaaaattgtagttttt 11437238  T
Q  201 gtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 257  Q
    |||| ||   | |||||||||||| ||||| |||||||  |||||||||||||||||||    
T  11437239 gtacttaagggaccaaaattgcaagtttttgaaagttaagggggaaaaagtgcacttta 11437297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 261
Target Start/End: Complemental strand, 50680504 - 50680331
Alignment:
Q  90 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaa 188  Q
    ||||||| |||||||| |||| ||| ||  | ||||||| |  |||||||||||| |||| ||||||||||||| || || |||||||||  || | |||    
T  50680504 ttaattaattacacacgtggcctgctacgtaggcgttgaataagtcaaaattgaccaaaaggatcaaagatgcaaaggggttaaatcttaggggactaaa 50680405  T
Q  189 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt-aggggaaaaagtgcactttaacct 261  Q
    ||| || ||||| ||| |||  |||||||||||||| |||||  ||||| ||||| |||| |||||||||||||    
T  50680404 attatagtttttatacttagggggccaaaattgcaagtttttggaagttaagggggaaaaatgcactttaacct 50680331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 98 - 257
Target Start/End: Original strand, 35595128 - 35595291
Alignment:
Q  98 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtcaaaattg-taat 196  Q
    |||||||| |||||||||| |   || ||||||| |||||||||||| |||| || |||||||||| || ||||||||||||  || |||||||| || |    
T  35595128 ttacacacgtggcatgccaaatcagcattgacttggtcaaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttaggggccaaaattgttagt 35595227  T
Q  197 ttttgtacatagaaggccaaaattgc-aactttttaaaagtt--aggggaaaaagtgcacttta 257  Q
    |||| |||||||  || ||||||||| || ||||| ||||||  ||||| |||||| |||||||    
T  35595228 ttttatacatagggggtcaaaattgctaagttttttaaagttagagggggaaaagtacacttta 35595291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 133 - 262
Target Start/End: Complemental strand, 39698692 - 39698561
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaa 232  Q
    |||||||||||| |||| ||| |||| ||||  ||||||||||||||  || ||||||| || ||| ||||| |||  ||||||||||| || |||||||    
T  39698692 gtcaaaattgaccaaaaggattaaagttgcaacgaggctaaatcttagtggccaaaattatagtttctgtacttagggggccaaaattgaaagtttttaa 39698593  T
Q  233 aagtta--ggggaaaaagtgcactttaacctt 262  Q
    ||||||  ||||  ||||||||||||| ||||    
T  39698592 aagttaaggggggtaaagtgcactttagcctt 39698561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 262
Target Start/End: Original strand, 37526806 - 37526980
Alignment:
Q  90 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtcaaaa 189  Q
    ||||||| |||||||| |||| | ||||  | ||||||| |  |||||||||||  ||||||| |||||||||| || ||||||||||||  || |||||    
T  37526806 ttaattaattacacacgtggcctaccacgtaggcgttgaataagtcaaaattgatcaaaaagaccaaagatgcaaaggggctaaatcttaggggccaaaa 37526905  T
Q  190 ttgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcactttaacctt 262  Q
    ||||  ||| | ||  |||   ||||||||||||| ||||| |||||||  |||| |||||| ||||||||||||    
T  37526906 ttgtggtttctatatttagggagccaaaattgcaagtttttgaaagttaaggggggaaaagtacactttaacctt 37526980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 133 - 257
Target Start/End: Complemental strand, 31194183 - 31194058
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||| ||||| | |||| || |||||||||| | ||||||||||||||||| | |||||| || |||||||||||    ||||||| | | |||||||||    
T  31194183 gtcagaattggcaaaaaggaccaaagatgcaaaaaggctaaatcttaaagggccaaaattttagtttttgtacatgtggggccaaattcgtaacttttta 31194084  T
Q  232 aaagttaggggaaaaagtgcacttta 257  Q
    ||||||||||  |||||||| |||||    
T  31194083 aaagttagggtgaaaagtgcccttta 31194058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 90 - 257
Target Start/End: Original strand, 39222401 - 39222572
Alignment:
Q  90 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtcaaa- 188  Q
    ||||||| ||| |||| || ||||||||  | ||||||| |  |||||||||| | ||||||| |||||||||| |  ||| |||||||| ||| | ||     
T  39222401 ttaattaattatacacgtgtcatgccacgtaggcgttgaataagtcaaaattgcccaaaaagaccaaagatgcaaatgggcaaaatcttagagggctaac 39222500  T
Q  189 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta---ggggaaaaagtgcacttta 257  Q
    |||||| ||||| ||| |||  |||||||||||||| ||||| |||||||   |||| ||||||||||||||    
T  39222501 attgtagtttttatacttagggggccaaaattgcaagtttttgaaagttaaagggggtaaaagtgcacttta 39222572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 242
Target Start/End: Complemental strand, 14999450 - 14999304
Alignment:
Q  93 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaatt 191  Q
    |||| ||||||||||||||||||||  | || |||||   |||||||||||| |||| |||||||| ||||||   |||||||   | ||| ||||||||    
T  14999450 attagttacacacatggcatgccacgtaggcattgaccg-gtcaaaattgacaaaaaggatcaaagttgcagatgagctaaat---agaggatcaaaatt 14999355  T
Q  192 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggg 242  Q
    ||| ||||||||| |||  || ||||||||||| ||||| |||||||||||    
T  14999354 gtagtttttgtacttagggggtcaaaattgcaagtttttgaaagttagggg 14999304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 261
Target Start/End: Original strand, 52276094 - 52276265
Alignment:
Q  93 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaatt 191  Q
    ||||||||||| | ||||||||||  || |||||||||  |||||||||||  |||| |||||||  ||||  | ||||||||||||  || | ||| ||    
T  52276094 attatttacacgcgtggcatgccatgcaagcgttgactaggtcaaaattgatcaaaaggatcaaatttgcaatggggctaaatcttaggggactaaattt 52276193  T
Q  192 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagttag--gggaaaaagtgcactttaacct 261  Q
     || ||||||||| |||  |||||||||| ||| ||||| ||||||||  |||  |||||||||||||||||    
T  52276194 atagtttttgtacttagggggccaaaattacaaatttttgaaagttagaagggggaaagtgcactttaacct 52276265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 238
Target Start/End: Original strand, 7675451 - 7675536
Alignment:
Q  154 caaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta 238  Q
    |||||||||| || ||||||||||||  || |||||||| |||||||| ||| ||| ||| ||||||||||| ||||| |||||||    
T  7675451 caaagatgcaaaggggctaaatcttagggggtcaaaattataatttttttacttaggagggcaaaattgcaagtttttgaaagtta 7675536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 175
Target Start/End: Complemental strand, 39221487 - 39221402
Alignment:
Q  90 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaat 175  Q
    ||||||| |||||||| |||| ||||||  | ||||||| || |||||||||||| |||| || |||||||||| || ||||||||    
T  39221487 ttaattaattacacacgtggcctgccacgtaggcgttgaattagtcaaaattgaccaaaaggaccaaagatgcaaaggggctaaat 39221402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 133 - 257
Target Start/End: Complemental strand, 45148710 - 45148584
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggt-caaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||| | |||| || |||||||||| || || |||||||||  ||  |||||||||| ||||| ||| |||  |||||||||||||| |||||     
T  45148710 gtcaaaattggccaaaaggaccaaagatgcaaaggggttaaatcttaggggggcaaaattgtagttttt-tacttagggggccaaaattgcaagtttttg 45148612  T
Q  232 aaagtta--ggggaaaaagtgcacttta 257  Q
    |||||||   ||||||||||||||||||    
T  45148611 aaagttaagcgggaaaaagtgcacttta 45148584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 7674605 - 7674547
Alignment:
Q  183 gtcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggg 242  Q
    |||||||||||| ||||||||| |||  | |||||||||||| |||||||||||||||||    
T  7674605 gtcaaaattgtagtttttgtacttagg-gcccaaaattgcaagtttttaaaagttagggg 7674547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 41364879 - 41364832
Alignment:
Q  211 ggccaaaattgcaactttttaaaagttagggga-aaaagtgcacttta 257  Q
    |||||||||||||| ||||| |||||||||||| ||||||||||||||    
T  41364879 ggccaaaattgcaagtttttgaaagttaggggagaaaagtgcacttta 41364832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 239
Target Start/End: Original strand, 43059977 - 43060084
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||||| |||| || |||||||||| |   |||||||||||| || ||||||||||| ||||||||| ||   || ||||||| ||| |||||     
T  43059977 gtcaaaattgaccaaaaggaccaaagatgcaaatgagctaaatcttaaggggtcaaaattgtagtttttgtacttaaggggtcaaaatttcaaatttttg 43060076  T
Q  232 aaagttag 239  Q
    ||||||||    
T  43060077 aaagttag 43060084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 133 - 257
Target Start/End: Original strand, 39699738 - 39699864
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||||| |||| ||| |||| ||||  | ||||||||||||  || | ||||||||| ||| ||||| |||  || ||||||||||| || ||     
T  39699738 gtcaaaattgaccaaaaggattaaagttgcaatggggctaaatcttagggggccaaaattgtagtttctgtacttagggggtcaaaattgcaagttattg 39699837  T
Q  232 aaagtta-ggggaaaaagtgcacttta 257  Q
    ||||||| |||| ||||||||||||||    
T  39699838 aaagttaggggggaaaagtgcacttta 39699864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 261
Target Start/End: Complemental strand, 7983126 - 7983049
Alignment:
Q  185 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggga-aaaagtgcactttaacct 261  Q
    |||||||||  ||||  |||||||  |||||||||||||| || || ||||||| |||| ||||||||||||||||||    
T  7983126 caaaattgtggttttgatacatagggggccaaaattgcaagttgttgaaagttacgggagaaaagtgcactttaacct 7983049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 30248241 - 30248168
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtcaaaattgtaatttttgtacat 206  Q
    |||||||||| | |||| ||||||||||||| ||  | ||||||||| |||  ||||||||| |||||||||||    
T  30248241 gtcaaaattggccaaaatgatcaaagatgcaaaggagttaaatcttagagggtaaaattgtagtttttgtacat 30248168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 179
Target Start/End: Original strand, 46525737 - 46525817
Alignment:
Q  98 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta 179  Q
    |||||||| |||||||||| | | |||||||||| ||||||||||||  ||||||||| |  |||| || ||||||||||||    
T  46525737 ttacacacgtggcatgccaaataagcgttgacttggtcaaaattgac-caaaagatcacaattgcaaaggggctaaatctta 46525817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 5e-27; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 93 - 257
Target Start/End: Complemental strand, 8456647 - 8456481
Alignment:
Q  93 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaatt 191  Q
    ||||||||||||| ||||||||||| || |||||||||  ||||||||||||||||| |||||||  ||||  ||||||||||||||   || |||||||    
T  8456647 attatttacacacgtggcatgccacgcaggcgttgactaggtcaaaattgactaaaaggatcaaatttgcaatgaggctaaatcttagggggccaaaatt 8456548  T
Q  192 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta-ggggaaaaagtgcacttta 257  Q
    ||| ||||||||  |||  | |||||||||||| ||||| ||| ||| |||||||||||||||||||    
T  8456547 gtagtttttgtatttaggggaccaaaattgcaagtttttgaaaattagggggaaaaagtgcacttta 8456481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 93 - 238
Target Start/End: Complemental strand, 23770026 - 23769881
Alignment:
Q  93 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtcaaaattg 192  Q
    ||||||||||||  ||||||||||||||| ||||||||| |||||||||||| |||| || |||||||||| |   || ||||||||  |||||||||||    
T  23770026 attatttacacatgtggcatgccacacatacgttgacttggtcaaaattgaccaaaaggaccaaagatgcaaatgagcgaaatcttaggggtcaaaattg 23769927  T
Q  193 taatttttgtacatagaaggccaaaattgcaactttttaaaagtta 238  Q
    || |||||| ||||||| |   ||||||||||||| || |||||||    
T  23769926 tagtttttgcacatagaggattaaaattgcaacttgttgaaagtta 23769881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 90 - 257
Target Start/End: Complemental strand, 12700346 - 12700178
Alignment:
Q  90 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaa 188  Q
    ||||||| |||||||| |||| ||||||  | ||||||| |  |||||||||||| |||| || ||||||||||  | ||||||||| ||  || |||||    
T  12700346 ttaattaattacacacgtggcctgccacgtaggcgttgaataagtcaaaattgaccaaaaggaccaaagatgcaatgtggctaaatcatagggggtcaaa 12700247  T
Q  189 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttaggggaaaaagtgcacttta 257  Q
    |||||| ||||||||| |||  |||||||||||||| ||||| |||||||||||  |||||||||||||    
T  12700246 attgtagtttttgtacttagggggccaaaattgcaagtttttgaaagttaggggggaaagtgcacttta 12700178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 133 - 257
Target Start/End: Complemental strand, 19984979 - 19984852
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||||| |||| || |||||||||| || || ||||||||||||| ||||||||||| |||||||||||||  |||||||||||||| |||||     
T  19984979 gtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttaaagggtcaaaattgtagtttttgtacatagggggccaaaattgcaagtttttg 19984880  T
Q  232 aaagtta--ggggaaaaagtgcacttta 257  Q
    ||| |||  |||| ||||||||||||||    
T  19984879 aaacttagggggggaaaagtgcacttta 19984852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 133 - 262
Target Start/End: Original strand, 54986978 - 54987108
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||| | |||| ||||||||||||| ||  ||||||||||| ||| |||||||| || ||||| |||||||  | | ||||| ||||||||||     
T  54986978 gtcaaaattggccaaaatgatcaaagatgcaaaggagctaaatcttagagggtcaaaattatagtttttatacataggggactaaaatcgcaactttttg 54987077  T
Q  232 aaagttaggggaaaaagtgcactttaacctt 262  Q
    ||| ||||||| |||||||||||||||||||    
T  54987078 aaacttagggggaaaagtgcactttaacctt 54987108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 94 - 260
Target Start/End: Original strand, 23770339 - 23770508
Alignment:
Q  94 ttatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattg 192  Q
    |||||| ||||| |||||||||||| |||||||||||| |||||| ||||| |||| ||  ||||||||| || || |||||||||  || | |||||||    
T  23770339 ttatttgcacacgtggcatgccacatatgcgttgacttggtcaaagttgaccaaaaggactaaagatgcaaaggggttaaatcttagggggctaaaattg 23770438  T
Q  193 taatttttgtacatagaaggccaaaattgcaac-tttttaaaagttagggga-aaaagtgcactttaacc 260  Q
    || ||||||||||||   | ||||||||| ||| ||||||||| | |||||| |||| ||||||||||||    
T  23770439 tagtttttgtacataagggaccaaaattgtaacttttttaaaattaaggggagaaaattgcactttaacc 23770508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 122 - 262
Target Start/End: Original strand, 46721180 - 46721323
Alignment:
Q  122 gcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaatt 220  Q
    |||||||||| |||||||||||| | || || |||| ||||| || ||||||||||||  || | ||||||||| |||||||||||||  ||  |||||     
T  46721180 gcgttgacttggtcaaaattgaccagaaggaccaaatatgcaaaggggctaaatcttaggggactaaaattgtagtttttgtacatagggggttaaaatc 46721279  T
Q  221 gcaactttttaaaagttagggg--aaaaagtgcactttaacctt 262  Q
    ||||||||||||||||||||||   |||||||||||||| ||||    
T  46721280 gcaactttttaaaagttagggggagaaaagtgcactttagcctt 46721323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 102 - 257
Target Start/End: Complemental strand, 7758563 - 7758405
Alignment:
Q  102 acacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaattttt 200  Q
    |||| |||||||||||  | |||||||||  |||||||||||| |||| || ||||||| || || || |||||||||  || | ||||||||| |||||    
T  7758563 acacgtggcatgccacttaagcgttgactaggtcaaaattgaccaaaaggaccaaagatacaaaggggttaaatcttagggggcaaaaattgtagttttt 7758464  T
Q  201 gtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 257  Q
    |||| |||  || ||||||||||| ||||| |||||||  |||||||||||||||||||    
T  7758463 gtacttagggggtcaaaattgcaagtttttgaaagttaagggggaaaaagtgcacttta 7758405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 122 - 257
Target Start/End: Complemental strand, 46720082 - 46719944
Alignment:
Q  122 gcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaatt 220  Q
    ||||||||||  ||||||||||| |||| || |||| ||||| |  |||||||||||| ||| | ||||||||| ||||| |||||||  |||||||||     
T  46720082 gcgttgacttgatcaaaattgaccaaaaggaccaaatatgcaaatgggctaaatcttagaggactaaaattgtagtttttatacatagggggccaaaatc 46719983  T
Q  221 gcaactttttaaaagtta--ggggaaaaagtgcacttta 257  Q
    ||||||||||||||||||  |||| |||| |||||||||    
T  46719982 gcaactttttaaaagttaaggggggaaaaatgcacttta 46719944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 133 - 261
Target Start/End: Complemental strand, 7267773 - 7267643
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||||| |||| ||| |||| ||||  ||||||||||||||  || | ||||||||| ||| ||||| |||  |||||||||||||| |||||     
T  7267773 gtcaaaattgaccaaaaggattaaagttgcaatgaggctaaatcttagggggccaaaattgtagtttctgtacttagggggccaaaattgcaagtttttg 7267674  T
Q  232 aaagtt-aggggaaaaagtgcactttaacct 261  Q
    |||||| ||||| ||||||||||||||||||    
T  7267673 aaagttaagggggaaaagtgcactttaacct 7267643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 128 - 257
Target Start/End: Complemental strand, 534634 - 534502
Alignment:
Q  128 actttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaact 226  Q
    |||| |||||||||| | |||  || |||||||||| | |||||||||||||  || | ||||||||| ||||||||||||| ||| ||||||||||| |    
T  534634 acttagtcaaaattggccaaatggaccaaagatgcaaataggctaaatcttagggggccaaaattgtagtttttgtacataggaggtcaaaattgcaagt 534535  T
Q  227 ttttaaaagtt--aggggaaaaagtgcacttta 257  Q
    |||| | ||||  ||||||||||||||||||||    
T  534534 ttttgagagttagaggggaaaaagtgcacttta 534502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 257
Target Start/End: Complemental strand, 47614358 - 47614188
Alignment:
Q  90 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaa 188  Q
    ||||||| |||||||| |||| ||||||  | ||||||| |  ||||||||| || ||||  | |||||||||| |||||||||||||||  || | |||    
T  47614358 ttaattaattacacacgtggcctgccacgtaggcgttgaataagtcaaaattaaccaaaagcaccaaagatgcaaagaggctaaatcttagggggccaaa 47614259  T
Q  189 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt--aggggaaaaagtgcacttta 257  Q
    |||||  ||||  ||| |||  |||||||||||||| ||||| ||||||  ||||||||||||||||||||    
T  47614258 attgttgttttgatacttagggggccaaaattgcaagtttttgaaagttagaggggaaaaagtgcacttta 47614188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 262
Target Start/End: Original strand, 54540761 - 54540893
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||||| |||| |||||||| |||| || ||||||||||||   || |||||||||| ||||||||| ||   || ||||||||||| |||||     
T  54540761 gtcaaaattgacaaaaaggatcaaagttgcaaaggggctaaatcttagggggccaaaattgtagtttttgtacttaaggggtcaaaattgcaagtttttg 54540860  T
Q  232 aaagtta--ggggaaaaagtgcactttaacctt 262  Q
    |||||||  |||| |||||||||||||| ||||    
T  54540861 aaagttaaggggggaaaagtgcactttagcctt 54540893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 186 - 257
Target Start/End: Complemental strand, 51037611 - 51037539
Alignment:
Q  186 aaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggga-aaaagtgcacttta 257  Q
    ||||||||| ||||||| |||||| || ||||||||||||||||| ||||||| |||| ||||||||||||||    
T  51037611 aaaattgtagtttttgttcatagagggtcaaaattgcaactttttgaaagttaagggagaaaagtgcacttta 51037539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 185 - 257
Target Start/End: Original strand, 22776836 - 22776910
Alignment:
Q  185 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttaggg--gaaaaagtgcacttta 257  Q
    |||||||||| |||||||||||||  |||||||||||||||||| | ||||||||||  | ||||||||||||||    
T  22776836 caaaattgtagtttttgtacatagggggccaaaattgcaactttctgaaagttaggggtggaaaagtgcacttta 22776910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 262
Target Start/End: Complemental strand, 49398220 - 49398125
Alignment:
Q  169 gctaaatcttaa-aggtcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt-aggggaaaaagtgcactttaacctt 262  Q
    |||||||||||| ||| |||||||||||||||||| |||||||  |||||||   || ||||||||| || ||||| |||||||||||||||||||    
T  49398220 gctaaatcttaagaggccaaaattgtaatttttgttcatagaacaccaaaataataattttttaaaacttaagggggaaaagtgcactttaacctt 49398125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 261
Target Start/End: Complemental strand, 51347433 - 51347267
Alignment:
Q  98 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaat 196  Q
    |||||||| | || ||||||  |||||||||||  ||||| |||||  |||| |||||||| |||| |  || |||||||||  || |||||||||| ||    
T  51347433 ttacacacgtagcctgccacgtatgcgttgactaggtcaacattgatcaaaatgatcaaagttgcaaacgggttaaatcttagggggtcaaaattgtcat 51347334  T
Q  197 ttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcactttaacct 261  Q
    |||||| |||||| | |||||||||||||||||| ||| |||   |||  |||||||||||||||||    
T  51347333 ttttgttcatagaggaccaaaattgcaactttttcaaacttaagagggggaaagtgcactttaacct 51347267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 262
Target Start/End: Original strand, 12703524 - 12703602
Alignment:
Q  185 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttag-gggaaaaagtgcactttaacctt 262  Q
    |||||||||| ||||||||| |||  |||||||||| ||| ||||| |||||||| |||||||||||||||||| ||||    
T  12703524 caaaattgtagtttttgtacttagggggccaaaattacaaatttttgaaagttagagggaaaaagtgcactttagcctt 12703602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 257
Target Start/End: Original strand, 19986007 - 19986170
Alignment:
Q  98 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaattgtaat 196  Q
    |||||||| |||||||||||  | || ||||||  ||||||||||||  ||| || |||||||||| || || ||||||||| | ||||||||||||| |    
T  19986007 ttacacacgtggcatgccacgtaggcattgactg-gtcaaaattgaccgaaatgaccaaagatgcaaaggggttaaatcttagagggtcaaaattgtagt 19986105  T
Q  197 ttttgtacatagaa--ggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 257  Q
    |||| ||||||| |  |||||||||||||| ||||| ||| |||   ||| ||||||||||||||    
T  19986106 ttttatacataggaggggccaaaattgcaagtttttgaaacttaagaggggaaaagtgcacttta 19986170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 262
Target Start/End: Complemental strand, 52104554 - 52104479
Alignment:
Q  185 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttaggggaaaaagtgcactttaacctt 262  Q
    ||||||| || ||||||||||||| |  |||||||| ||||||||| ||||||||||| ||||||||| |||||||||    
T  52104554 caaaattatagtttttgtacatagga--ccaaaattacaactttttgaaagttagggggaaaagtgcattttaacctt 52104479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 185 - 261
Target Start/End: Original strand, 7268851 - 7268928
Alignment:
Q  185 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta-ggggaaaaagtgcactttaacct 261  Q
    |||||||||| ||| | ||| ||| ||||||||||||||| ||||| ||||||| |||| ||||||||||||||||||    
T  7268851 caaaattgtagtttctatacttaggaggccaaaattgcaagtttttgaaagttaggggggaaaagtgcactttaacct 7268928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 93 - 257
Target Start/End: Original strand, 40426709 - 40426877
Alignment:
Q  93 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaatt 191  Q
    ||||||| ||||  || ||||||||| |||||||||||| ||||||||| || |||| || ||||||  || ||  |||||||| ||  || | ||||||    
T  40426709 attatttgcacatgtgacatgccacatatgcgttgacttggtcaaaattaaccaaaaggaccaaagacacaaaggagctaaatcatagggggccaaaatt 40426808  T
Q  192 gtaatttttgtacatagaaggcc-aaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 257  Q
    |||||||||||| |||   |||| ||| |||||||||||| |||||||  |||| ||||||||||||||    
T  40426809 gtaatttttgtatataaggggccgaaatttgcaacttttttaaagttaaggggggaaaagtgcacttta 40426877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 257
Target Start/End: Complemental strand, 29931396 - 29931229
Alignment:
Q  93 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaatt 191  Q
    ||||||||||||| ||| |||||| ||| ||||||||| ||||||||||||| |||| ||  |    |||| || || |||||||||   || |||||||    
T  29931396 attatttacacacgtggaatgccatacaggcgttgactgtgtcaaaattgaccaaaaggactattattgcaaaggggttaaatcttagggggccaaaatt 29931297  T
Q  192 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagttaggg--gaaaaagtgcacttta 257  Q
    ||| ||||||||  |||  ||| |||||||||| ||||| ||||||||||  | ||||||||||||||    
T  29931296 gtagtttttgtatttagggggcaaaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 29931229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 262
Target Start/End: Original strand, 29932707 - 29932801
Alignment:
Q  170 ctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt--aggggaaaaagtgcactttaacctt 262  Q
    ||||||||||| || ||||||||||| ||||||||| |||  |||||||||||||| ||||| ||||||  ||||| |||||||||||||| ||||    
T  29932707 ctaaatcttaaggggtcaaaattgtagtttttgtacttagg-ggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcctt 29932801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 257
Target Start/End: Complemental strand, 29980550 - 29980383
Alignment:
Q  93 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaatt 191  Q
    ||||||||||||| ||| |||||| ||| ||||||||| ||||||||||||| |||| ||  |    |||| || || |||||||||   || |||||||    
T  29980550 attatttacacacgtggaatgccatacaggcgttgactgtgtcaaaattgaccaaaaggactattattgcaaaggggttaaatcttagggggccaaaatt 29980451  T
Q  192 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagttaggg--gaaaaagtgcacttta 257  Q
    ||| ||||||||  |||  ||| |||||||||| ||||| ||||||||||  | ||||||||||||||    
T  29980450 gtagtttttgtatttagggggcaaaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 29980383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 262
Target Start/End: Original strand, 29981861 - 29981955
Alignment:
Q  170 ctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt--aggggaaaaagtgcactttaacctt 262  Q
    ||||||||||| || ||||||||||| ||||||||| |||  |||||||||||||| ||||| ||||||  ||||| |||||||||||||| ||||    
T  29981861 ctaaatcttaaggggtcaaaattgtagtttttgtacttagg-ggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttagcctt 29981955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 200
Target Start/End: Original strand, 46492967 - 46493055
Alignment:
Q  112 tgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtcaaaattgtaattttt 200  Q
    |||||| ||||||||||||  |||||||||||| |||| |||||||| ||||| | ||||||| ||||  ||| |||||||| ||||||    
T  46492967 tgccacgcatgcgttgactaggtcaaaattgaccaaaaggatcaaagttgcaggggggctaaaacttaggggttaaaattgtcattttt 46493055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 240
Target Start/End: Complemental strand, 49216377 - 49216269
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggt-caaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||| | |||| ||||||||||||| |   |||||||||||| ||  || ||||||| |||||||||||||  || |||||||||||||||||     
T  49216377 gtcaaaattggccaaaatgatcaaagatgcaaatgagctaaatcttaaggggacataattgtagtttttgtacatagggggtcaaaattgcaactttttg 49216278  T
Q  232 aaagttagg 240  Q
    ||| |||||    
T  49216277 aaacttagg 49216269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 185 - 259
Target Start/End: Original strand, 34940211 - 34940286
Alignment:
Q  185 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttag-gggaaaaagtgcactttaac 259  Q
    |||||||||||||||| ||||||  ||   |||||||||| ||||||||| |||| ||||||||||||||||||||    
T  34940211 caaaattgtaatttttatacataagagattaaaattgcaagtttttaaaaattagagggaaaaagtgcactttaac 34940286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 185 - 257
Target Start/End: Original strand, 51038814 - 51038888
Alignment:
Q  185 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 257  Q
    |||||||||| ||||||| |||||  || |||||||||||||||||||||||||  || | ||||||||||||||    
T  51038814 caaaattgtagtttttgttcatagggggtcaaaattgcaactttttaaaagttaagggtggaaaagtgcacttta 51038888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 55192019 - 55192072
Alignment:
Q  185 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta 238  Q
    |||||||||| ||||||||| |||| |||||||||||||| ||||| |||||||    
T  55192019 caaaattgtagtttttgtacttagagggccaaaattgcaagtttttgaaagtta 55192072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 54654331 - 54654375
Alignment:
Q  186 aaaattgtaatttttgtacatagaaggccaaaattgcaacttttt 230  Q
    |||||||||||||||||||||||||| ||||||||  ||||||||    
T  54654331 aaaattgtaatttttgtacatagaagaccaaaattataacttttt 54654375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 256
Target Start/End: Complemental strand, 24516554 - 24516464
Alignment:
Q  169 gctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttt 256  Q
    |||||||||||| || | ||||||||| ||||| ||| |||   ||||||||||||| ||||| |||||||  ||||||||||||||||||    
T  24516554 gctaaatcttaaggggccaaaattgtagtttttatacttagggtgccaaaattgcaagttttttaaagttaggggggaaaaagtgcacttt 24516464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 257
Target Start/End: Original strand, 53901441 - 53901484
Alignment:
Q  214 caaaattgcaactttttaaaagttaggggaaaaagtgcacttta 257  Q
    ||||||||||||||||| ||| ||||||| ||||||||||||||    
T  53901441 caaaattgcaacttttttaaacttagggggaaaagtgcacttta 53901484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 133 - 230
Target Start/End: Complemental strand, 8876036 - 8875938
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttt 230  Q
    ||||||||||||||||| || |||| ||||| |  ||||||||||||   || |||||||||| ||||||||||||   ||| ||||||||| ||||||    
T  8876036 gtcaaaattgactaaaaggaccaaatatgcaaattggctaaatcttagggggccaaaattgtagtttttgtacataaggggctaaaattgcagcttttt 8875938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 261
Target Start/End: Original strand, 39844251 - 39844299
Alignment:
Q  215 aaaattgcaactttttaaaagtta--ggggaaaaagtgcactttaacct 261  Q
    |||||||||||||||||||| |||  |||||||| ||||||||||||||    
T  39844251 aaaattgcaactttttaaaacttaagggggaaaaggtgcactttaacct 39844299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 261
Target Start/End: Original strand, 47610630 - 47610682
Alignment:
Q  211 ggccaaaattgcaactttttaaaagtt--aggggaaaaagtgcactttaacct 261  Q
    |||||||||||||| ||||| ||||||  ||||| ||||||||||||||||||    
T  47610630 ggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactttaacct 47610682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 179
Target Start/End: Original strand, 47615505 - 47615594
Alignment:
Q  90 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta 179  Q
    ||||||| |||||||| |||| ||||||  | || |||| |  |||||||||||| |||| || |||||||||| || ||||||||||||    
T  47615505 ttaattaattacacacgtggcctgccacgtaggcattgaataagtcaaaattgaccaaaaggaccaaagatgcaaaggggctaaatctta 47615594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 262
Target Start/End: Complemental strand, 54539924 - 54539753
Alignment:
Q  93 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaatt 191  Q
    |||| |||||||| |||||||||||  |||| |||||   |||||||||| | |||| |||||||| |||| |   |||||||||||  || ||||||||    
T  54539924 attaattacacacgtggcatgccacgtatgctttgac-cagtcaaaattggcaaaaaggatcaaagttgcaaatgagctaaatcttaggggatcaaaatt 54539826  T
Q  192 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcactttaacctt 262  Q
    ||| ||||||||  |||  ||  |||||||||| ||||| |||||||  || | |||||||||||||| ||||    
T  54539825 gtagtttttgtatttagggggttaaaattgcaagtttttgaaagttaagggtggaaaagtgcactttagcctt 54539753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 215 - 260
Target Start/End: Complemental strand, 39843098 - 39843051
Alignment:
Q  215 aaaattgcaactttttaaaagtta--ggggaaaaagtgcactttaacc 260  Q
    |||||||||||||||| ||| |||  ||||||||||||||||||||||    
T  39843098 aaaattgcaactttttcaaacttaagggggaaaaagtgcactttaacc 39843051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 7e-26; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 93 - 257
Target Start/End: Original strand, 26545452 - 26545619
Alignment:
Q  93 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaatt 191  Q
    ||||||||||||| |||||||||||| ||||||||| || |||||||||||  |||| || |||||||||| || |||||||||||| | ||||||||||    
T  26545452 attatttacacacgtggcatgccacatatgcgttgatttggtcaaaattgatcaaaatgaccaaagatgcaaaggggctaaatcttagagggtcaaaatt 26545551  T
Q  192 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagg--ggaaaaagtgcacttta 257  Q
     |||||||||||  ||   || ||||||||||| ||||| ||||| | |  |||||||||||||||||    
T  26545552 ataatttttgtatttaaggggtcaaaattgcaaatttttgaaagtcatgaaggaaaaagtgcacttta 26545619  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 90 - 257
Target Start/End: Complemental strand, 13030462 - 13030295
Alignment:
Q  90 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtcaaaa 189  Q
    ||||||| |||||||  |||| ||||||  | ||||||| |  |||||||||||| |||| || |||||||||| |   |||||||||||  || |||||    
T  13030462 ttaattaattacacatgtggcctgccacgtaggcgttgaataagtcaaaattgaccaaaatgaccaaagatgcaaaagagctaaatcttagggggcaaaa 13030363  T
Q  190 -ttgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttaggggaaaaagtgcacttta 257  Q
     ||||||||||||||| |||  |||||||||| ||| ||||| ||||||||||| ||||||||||||||    
T  13030362 attgtaatttttgtacttagg-ggccaaaattacaagtttttgaaagttagggggaaaagtgcacttta 13030295  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 93 - 262
Target Start/End: Complemental strand, 11257791 - 11257620
Alignment:
Q  93 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaatt 191  Q
    ||||||||||||| ||||||||||| || ||||||||| ||||||||||||  |||| |||||||  ||||  | ||||||||||||  ||| |||||||    
T  11257791 attatttacacacgtggcatgccacgcaggcgttgactatgtcaaaattgatcaaaaggatcaaatttgcaatggggctaaatcttaggaggccaaaatt 11257692  T
Q  192 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggga--aaaagtgcactttaacctt 262  Q
    ||| ||||| ||| |||  |   |||||||||| ||||| |||||||| |||  |||||||||||||| ||||    
T  11257691 gtagtttttatacttag-ggtttaaaattgcaagtttttgaaagttagaggagtaaaagtgcactttagcctt 11257620  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 99 - 262
Target Start/End: Original strand, 22587892 - 22588056
Alignment:
Q  99 tacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaa-aggtcaaaattgtaatt 197  Q
    ||||||| |||||||||||| |  ||||||||  ||| |||||| | |||| || |||||||||| || |||||||||||||  || |||||||||| ||    
T  22587892 tacacacgtggcatgccacatagacgttgactg-gtcgaaattggccaaaaggaccaaagatgcaaaggggctaaatcttaaggggccaaaattgtagtt 22587990  T
Q  198 tttgtacatagaaggccaaaattgcaactttttaaaagtt---aggggaaaaagtgcactttaacctt 262  Q
    |||||||||||  |||||||||||||| ||||| ||||||   |||||||||| ||||||||| ||||    
T  22587991 tttgtacatag-gggccaaaattgcaagtttttgaaagttatgaggggaaaaa-tgcactttagcctt 22588056  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 125 - 257
Target Start/End: Original strand, 18300688 - 18300820
Alignment:
Q  125 ttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtcaaaattgtaatttttgtacatagaaggccaaaattgcaa 224  Q
    |||||||  ||||||||| | |||| || |||||||||| || ||||||||  ||  ||||||||||||| ||||||||| |||  || |||||||||||    
T  18300688 ttgacttgatcaaaattgtccaaaaggaccaaagatgcaaaggggctaaattataggggtcaaaattgtagtttttgtacttagggggtcaaaattgcaa 18300787  T
Q  225 ctttttaaaagttaggggaaaaagtgcacttta 257  Q
     ||| | ||||||||||| ||||||||| ||||    
T  18300788 gtttatgaaagttagggggaaaagtgcaattta 18300820  T

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Target: chr2; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 90 - 239
Target Start/End: Original strand, 18869090 - 18869242
Alignment:
Q  90 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagagg-ctaaatcttaaagg-tcaa 187  Q
    ||||||| |||||||| |||| ||||||| | ||||||| |  |||||||||||  ||||||| |||||||||| |  || ||||||||||  || | ||    
T  18869090 ttaattaattacacacgtggcctgccacataggcgttgaataagtcaaaattgatcaaaaagaccaaagatgcaaaatgggctaaatcttaggggataaa 18869189  T
Q  188 aattgtaatttttgtacatagaaggccaaaattg-caactttttaaaagttag 239  Q
    ||||||| ||||||||| |||||||||||||||| ||| ||||| ||||||||    
T  18869190 aattgtagtttttgtacttagaaggccaaaattgccaaatttttgaaagttag 18869242  T

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Target: chr2; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 93 - 257
Target Start/End: Complemental strand, 26544318 - 26544152
Alignment:
Q  93 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaatt 191  Q
    |||||||||||||  ||||||||||| |||||||||||| |||||||||||  |||| || |||| ||||| ||  |||||||||||  |||  |||| |    
T  26544318 attatttacacacgcggcatgccacatatgcgttgacttggtcaaaattgatcaaaaggaccaaatatgcaaaggtgctaaatcttaggaggctaaaact 26544219  T
Q  192 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggg--aaaaagtgcacttta 257  Q
    ||| ||||||||| ||| |  ||||||||| || ||||||||| |||||||   ||||||||||||||    
T  26544218 gtagtttttgtacttagga-accaaaattgtaaatttttaaaaattaggggtagaaaagtgcacttta 26544152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 239
Target Start/End: Original strand, 11258742 - 11258889
Alignment:
Q  93 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaatt 191  Q
    ||||||| ||| | ||||||||||  || |||||||||  |||||||||||| |||| |||||||  ||||  | ||||||||||||  || | ||||||    
T  11258742 attatttgcacgcgtggcatgccatgcaagcgttgactaggtcaaaattgaccaaaaggatcaaatctgcaatggggctaaatcttaggggactaaaatt 11258841  T
Q  192 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagttag 239  Q
    ||| ||||||||| |||  |||||||||||||| ||||| ||||||||    
T  11258842 gtagtttttgtacttagggggccaaaattgcaagtttttgaaagttag 11258889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 90 - 257
Target Start/End: Original strand, 18905916 - 18906085
Alignment:
Q  90 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtcaaaa 189  Q
    ||||||| |||||||| |||  ||||||  | ||||||| |  |||||||||||  ||||||| |||||||||| |   |||||||||||  ||  ||||    
T  18905916 ttaattaattacacacgtggtctgccacgtaggcgttgaataagtcaaaattgatcaaaaagaccaaagatgcaaatgagctaaatcttaggggctaaaa 18906015  T
Q  190 ttgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttag--gggaaaaagtgcacttta 257  Q
    ||||| ||||||||| |||  ||| |||||||||| ||||| ||||||||  ||| ||||||||||||||    
T  18906016 ttgtagtttttgtacttagggggctaaaattgcaagtttttgaaagttagaaggggaaaagtgcacttta 18906085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 90 - 262
Target Start/End: Complemental strand, 22848364 - 22848189
Alignment:
Q  90 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaag-gtcaaa 188  Q
    ||||||| |||||||| |||| ||||||  | ||||||| |  |||||||||||  |||| || ||||| |||| || ||||||||||||  | | ||||    
T  22848364 ttaattaattacacacgtggcttgccacgtaggcgttgaataagtcaaaattgatcaaaaggaccaaagctgcaaaggggctaaatcttagggagccaaa 22848265  T
Q  189 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcactttaacctt 262  Q
    |||||| ||||||||  |||  | |||||||||||| ||||| |||||||  |||| |||||||||||||| ||||    
T  22848264 attgtagtttttgtatttaggggaccaaaattgcaagtttttgaaagttaggggggtaaaagtgcactttagcctt 22848189  T

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Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 182 - 254
Target Start/End: Original strand, 24476865 - 24476937
Alignment:
Q  182 ggtcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttaggggaaaaagtgcact 254  Q
    ||||||||||||| ||||||||| |||  | |||||||| ||| |||||||||||| ||||||||||||||||    
T  24476865 ggtcaaaattgtagtttttgtacttaggggaccaaaattacaagtttttaaaagttgggggaaaaagtgcact 24476937  T

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Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 211 - 262
Target Start/End: Original strand, 21837305 - 21837356
Alignment:
Q  211 ggccaaaattgcaactttttaaaagttaggggaaaaagtgcactttaacctt 262  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||| ||||    
T  21837305 ggccaaaattgcaagtttttgaaagttaggggaaaaagtgcactttagcctt 21837356  T

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Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 32739700 - 32739638
Alignment:
Q  185 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttaggggaaaaa 247  Q
    |||||||||| ||||||||||||   |||||||||||||| ||||| ||||||||||||||||    
T  32739700 caaaattgtagtttttgtacataaggggccaaaattgcaagtttttgaaagttaggggaaaaa 32739638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 122 - 230
Target Start/End: Complemental strand, 11996848 - 11996739
Alignment:
Q  122 gcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaatt 220  Q
    |||||||||| |||||||||||| |||| || |||||||| | || || ||||||||| ||  | ||||||||| |||||||||||||  || ||||||     
T  11996848 gcgttgacttggtcaaaattgaccaaaaggaccaaagatgtaaaggggttaaatcttagagaactaaaattgtagtttttgtacatagggggtcaaaatc 11996749  T
Q  221 gcaacttttt 230  Q
    ||||||||||    
T  11996748 gcaacttttt 11996739  T

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Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 98 - 242
Target Start/End: Complemental strand, 18797412 - 18797267
Alignment:
Q  98 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaat 196  Q
    |||||||| |||||||||| | | ||||||||   |||||||||| |||||| || |||||||||| || |||||||| |||  || ||||||||||| |    
T  18797412 ttacacacgtggcatgccaaataagcgttgaccaagtcaaaattggctaaaaggaccaaagatgcaaaggggctaaattttagggggtcaaaattgtagt 18797313  T
Q  197 ttttgtacatagaaggccaaaattgcaactttttaaaagttagggg 242  Q
    |||  ||| ||   || ||||||||||| ||||| |||||||||||    
T  18797312 tttaatacttaaggggtcaaaattgcaagtttttgaaagttagggg 18797267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 133 - 241
Target Start/End: Complemental strand, 22587630 - 22587522
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||| | |||| || |||||||||| |||||||||||||||   || |||||||||| |||||||| ||||  | ||||||||| ||||||||     
T  22587630 gtcaaaattggccaaaaggaccaaagatgcaaagaggctaaatcttagggggccaaaattgtagtttttgta-ataggggaccaaaattggaactttttg 22587532  T
Q  232 aaagttaggg 241  Q
    ||||||||||    
T  22587531 aaagttaggg 22587522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 257
Target Start/End: Complemental strand, 18299511 - 18299376
Alignment:
Q  125 ttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaattgtaatttttgtacatagaaggccaaaattgca 223  Q
    ||||||| |||||||||||| |||| ||||||||||||| |  ||||||||| ||   || |||||||||| ||||| ||| |||  ||||||||||| |    
T  18299511 ttgacttggtcaaaattgaccaaaaggatcaaagatgcaaaagggctaaatcatagggggccaaaattgtagtttttatacttaggtggccaaaattgaa 18299412  T
Q  224 actttttaaaagtta--ggggaaaaagtgcacttta 257  Q
    | ||||| |||||||  || | ||||||||||||||    
T  18299411 agtttttgaaagttacgggtggaaaagtgcacttta 18299376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 257
Target Start/End: Complemental strand, 28618094 - 28617926
Alignment:
Q  90 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtcaaaa 189  Q
    ||||||| |||||||| |||  ||||||  | || |||| || |||||||| ||| ||||  | |||||||||| || ||||||||||||  || |||||    
T  28618094 ttaattaattacacacgtggtctgccacgtaggcattgaattagtcaaaatagaccaaaataaccaaagatgcaaaggggctaaatcttagggggcaaaa 28617995  T
Q  190 ttgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttaggg-gaaaaagtgcacttta 257  Q
    ||| | ||||||||| | |  ||||||||||||||  |||| |||||||||| |||||| || ||||||    
T  28617994 ttgaagtttttgtacttggggggccaaaattgcaagattttgaaagttagggagaaaaaatgtacttta 28617926  T

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Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 185 - 257
Target Start/End: Complemental strand, 36449855 - 36449781
Alignment:
Q  185 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 257  Q
    |||||||||| ||||||||| |||  |||||||||||||| ||||| |||||||  |||| ||||||||||||||    
T  36449855 caaaattgtagtttttgtacttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcacttta 36449781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 262
Target Start/End: Original strand, 802563 - 802693
Alignment:
Q  134 tcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaa 232  Q
    |||||||||||  ||| || |||| ||||| || ||  |||||||| ||| ||||||||||| |||||||||| ||  |||||||||||||| ||||| |    
T  802563 tcaaaattgacctaaaggaccaaatatgcaaaggggtaaaatcttagagggtcaaaattgtagtttttgtacacagggggccaaaattgcaagtttttga 802662  T
Q  233 aagtta-ggggaaaaagtgcactttaacctt 262  Q
    || ||| |||| |||||| ||||||| ||||    
T  802663 aacttaggggggaaaagtacactttagcctt 802693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 18869002 - 18868944
Alignment:
Q  184 tcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggg 242  Q
    ||||||||||| ||||||||  ||| ||||||||||||||| ||||| |||||||||||    
T  18869002 tcaaaattgtagtttttgtatttaggaggccaaaattgcaagtttttgaaagttagggg 18868944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 21837119 - 21837073
Alignment:
Q  211 ggccaaaattgcaactttttaaaagttaggggaaaaagtgcacttta 257  Q
    |||||||||||||| ||||| |||||||| |||||||||||||||||    
T  21837119 ggccaaaattgcaagtttttgaaagttagaggaaaaagtgcacttta 21837073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 8535709 - 8535766
Alignment:
Q  214 caaaattgcaactttttaaaagttaggggaaaaagtgcactttaaccttcaaagtact 271  Q
    ||||||| ||| ||||||||||||||| | ||||||| ||||||||||||||| ||||    
T  8535709 caaaattacaagtttttaaaagttaggaggaaaagtgtactttaaccttcaaattact 8535766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 133 - 257
Target Start/End: Original strand, 7899853 - 7899980
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||||| |||||||| |||| | ||  | ||||||||||||  || | ||||||||| ||| ||||| |||  | |||||||||||| |||||     
T  7899853 gtcaaaattgaccaaaaagattaaagttacaatggggctaaatcttagggggctaaaattgtagtttctgtacttaggggaccaaaattgcaagtttttg 7899952  T
Q  232 aaagtta--ggggaaaaagtgcacttta 257  Q
    |||||||  |||| ||||||||||||||    
T  7899953 aaagttaaggggggaaaagtgcacttta 7899980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 261
Target Start/End: Original strand, 36450947 - 36451022
Alignment:
Q  187 aaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt-aggggaaaaagtgcactttaacct 261  Q
    |||||||| ||| ||||| |||  | |||||||||||| ||||| |||||| ||||| ||||||||||||||||||    
T  36450947 aaattgtagtttctgtacttaggggaccaaaattgcaagtttttgaaagttaagggggaaaagtgcactttaacct 36451022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 185 - 261
Target Start/End: Complemental strand, 7898768 - 7898690
Alignment:
Q  185 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta-gggga-aaaagtgcactttaacct 261  Q
    |||||||||| ||| | ||| ||| |||| |||||||||| ||||| ||||||| ||||| ||||||||||||||||||    
T  7898768 caaaattgtagtttctatacttaggaggcaaaaattgcaagtttttgaaagttaaggggagaaaagtgcactttaacct 7898690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 184 - 263
Target Start/End: Complemental strand, 13568050 - 13567969
Alignment:
Q  184 tcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttag--gggaaaaagtgcactttaaccttc 263  Q
    ||||||||||| ||||||||  |||  |||||||||||||| ||||| ||| ||||  ||| |||||| |||||||||||||    
T  13568050 tcaaaattgtagtttttgtatttagggggccaaaattgcaagtttttgaaacttagaaggggaaaagtacactttaaccttc 13567969  T

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Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 257
Target Start/End: Original strand, 11938822 - 11938886
Alignment:
Q  195 atttttgtacatagaaggccaaaattgcaactttttaaaagttaggg--gaaaaagtgcacttta 257  Q
    |||||||||| ||| || |||||||||||| ||||| ||||||||||  | ||||||||||||||    
T  11938822 atttttgtacttaggagaccaaaattgcaagtttttgaaagttaggggtggaaaagtgcacttta 11938886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 810802 - 810850
Alignment:
Q  182 ggtcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttt 230  Q
    ||||||||||||| |||||||||| ||  |||||||||||||| |||||    
T  810802 ggtcaaaattgtagtttttgtacacagggggccaaaattgcaagttttt 810850  T

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Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 133 - 224
Target Start/End: Complemental strand, 41878224 - 41878132
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaa 224  Q
    |||||||||||| |||||||| |||  ||||  | ||||||||||||| || | ||||||||| ||| ||||| |||  ||||||||||||||    
T  41878224 gtcaaaattgaccaaaaagattaaaattgcaatggggctaaatcttaaggggccaaaattgtagtttctgtacttagggggccaaaattgcaa 41878132  T

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Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 93 - 242
Target Start/End: Complemental strand, 31659793 - 31659643
Alignment:
Q  93 attatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaatt 191  Q
    ||||||||||||| ||||||||||| |||||||||||| ||||||||||||| |||| |||||||  ||||  | ||||||||||||   || |||||||    
T  31659793 attatttacacacgtggcatgccacgcatgcgttgactatgtcaaaattgaccaaaaggatcaaatttgcaatggggctaaatcttagggggccaaaatt 31659694  T
Q  192 gtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggg 242  Q
    ||| ||||||||| |||  || |||||||| || ||||| |||||||||||    
T  31659693 gtagtttttgtacttagggggtcaaaattgtaagtttttgaaagttagggg 31659643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 135 - 257
Target Start/End: Complemental strand, 21505542 - 21505419
Alignment:
Q  135 caaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaa 233  Q
    |||||||| | |||| || |||||||||| || ||||||||||||  || ||||||||||| |||||||| || |  ||||||||| |||||||||| ||    
T  21505542 caaaattgtccaaaaggaccaaagatgcaaaggggctaaatcttatggggtcaaaattgtagtttttgtatatcgggggccaaaatcgcaactttttgaa 21505443  T
Q  234 agttaggggaaaaagtgcacttta 257  Q
    ||||||||| ||||||||||||||    
T  21505442 agttagggggaaaagtgcacttta 21505419  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 90 - 262
Target Start/End: Complemental strand, 7500627 - 7500453
Alignment:
Q  90 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaa 188  Q
    ||||||| ||||||||||||| ||||||  | ||||||| |  |||||||||||| |||| ||||||||||||| || ||||||||||||   || ||||    
T  7500627 ttaattaattacacacatggcctgccacgtaggcgttgaataagtcaaaattgaccaaaaggatcaaagatgcaaaggggctaaatcttagggggccaaa 7500528  T
Q  189 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt-aggggaaaaagtgcactttaacctt 262  Q
    |||||  ||| | ||| |||| |  ||||||||||| ||||| |||||| ||||| |||||||||||||| ||||    
T  7500527 attgtggtttctatacttagaggatcaaaattgcaagtttttgaaagttaagggggaaaagtgcactttagcctt 7500453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 90 - 247
Target Start/End: Complemental strand, 47369954 - 47369796
Alignment:
Q  90 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaa 188  Q
    ||||||| |||||||| |||| ||||||| | ||||||| |  |||||||||||| ||||  |  ||||||||| || ||||||||||||| || | |||    
T  47369954 ttaattaattacacacgtggcctgccacataggcgttgaataagtcaaaattgaccaaaataactaaagatgcaaaggggctaaatcttaaggggccaaa 47369855  T
Q  189 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttaggggaaaaa 247  Q
    ||| || ||||||||| ||  |||| |||||||||| ||||| ||||||||||||||||    
T  47369854 attatagtttttgtacttatgaggctaaaattgcaagtttttgaaagttaggggaaaaa 47369796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 90 - 243
Target Start/End: Complemental strand, 22629659 - 22629505
Alignment:
Q  90 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaa 188  Q
    ||||||| |||||||| ||||| |||||  | ||||||| |  |||||||||||| |||| || |||||||||| || ||||||||||||   || ||||    
T  22629659 ttaattaattacacacgtggcaggccacgtaggcgttgaataagtcaaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttagggggccaaa 22629560  T
Q  189 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggga 243  Q
    |||||| ||||||||| ||| ||||||||||| ||| ||||| ||| ||| ||||    
T  22629559 attgtagtttttgtacttaggaggccaaaattacaagtttttgaaaattaaggga 22629505  T

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Target: chr7; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 90 - 242
Target Start/End: Original strand, 18372385 - 18372538
Alignment:
Q  90 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaa 188  Q
    ||||||| |||||||| ||||| |||||| |  |||||| |  |||||||||||| |||| || ||||||| || || ||||||||||||   || ||||    
T  18372385 ttaattaattacacacgtggcaggccacatagacgttgaataagtcaaaattgaccaaaaggaccaaagatacaaaggggctaaatcttagggggccaaa 18372484  T
Q  189 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggg 242  Q
    |||||| ||||||||| |||  |||||||||||||| ||||| ||| |||||||    
T  18372485 attgtagtttttgtacttagggggccaaaattgcaagtttttgaaaattagggg 18372538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 257
Target Start/End: Complemental strand, 18371597 - 18371427
Alignment:
Q  90 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaa 188  Q
    ||||||| ||| |||| |||| ||||||  | ||||||| |  |||||||||||| |||| ||||||||||||| |   |||||||||||  || | |||    
T  18371597 ttaattaattatacacgtggcctgccacgtaggcgttgaataagtcaaaattgaccaaaaggatcaaagatgcaaatgtgctaaatcttagggggccaaa 18371498  T
Q  189 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttag--gggaaaaagtgcacttta 257  Q
    |||||| ||||||||| ||   |||||||||||||| ||||| ||||||||  ||| ||||||||||||||    
T  18371497 attgtagtttttgtacttaaggggccaaaattgcaagtttttgaaagttaggaggggaaaagtgcacttta 18371427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 261
Target Start/End: Original strand, 42886257 - 42886388
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||||| |||| ||||||||||||| |  ||||||||||||  || | ||||||||| ||||||||  |||  || ||||||||||| |||||     
T  42886257 gtcaaaattgaccaaaatgatcaaagatgcaaatgggctaaatcttagggggctaaaattgtagtttttgtatttagggggtcaaaattgcaaatttttg 42886356  T
Q  232 aaagttagg-gga-aaaagtgcactttaacct 261  Q
    ||||||||| ||| ||||||||||||||||||    
T  42886357 aaagttaggaggagaaaagtgcactttaacct 42886388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 98 - 261
Target Start/End: Complemental strand, 6618372 - 6618208
Alignment:
Q  98 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaag-gtcaaaattgtaat 196  Q
    |||||||  |||||||||||| | |||||||||  |||||||||||  |||| |||||||  ||||  ||||| ||||||||  | ||||||||||||||    
T  6618372 ttacacatgtggcatgccacataggcgttgactaggtcaaaattgatcaaaatgatcaaatttgcaatgaggcaaaatcttagggagtcaaaattgtaat 6618273  T
Q  197 ttttgtacatagaaggccaaaattgcaactttttaaaagttaggggaaaaagtgcactttaacct 261  Q
    |||| ||  ||      ||||||||||| |||| ||||||||| ||||||||| |||||||||||    
T  6618272 ttttatatttaaggaatcaaaattgcaagttttgaaaagttagaggaaaaagtacactttaacct 6618208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 257
Target Start/End: Original strand, 7501780 - 7501950
Alignment:
Q  90 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaa-aggtcaaa 188  Q
    ||||||| |||||||| |||| ||||||  | || |||| |  |||||||||||| |||| || |||||||||| || ||||| |||||||  || ||||    
T  7501780 ttaattaattacacacgtggcctgccacgtaggcattgaataagtcaaaattgaccaaaaggaccaaagatgcaaaggggctacatcttaaggggccaaa 7501879  T
Q  189 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt--aggggaaaaagtgcacttta 257  Q
    |||||  ||||  ||| |||  |||||||||||||| ||||| ||||||  ||||| ||||||||||||||    
T  7501880 attgttgttttgatacttagggggccaaaattgcaagtttttgaaagttagagggggaaaagtgcacttta 7501950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 257
Target Start/End: Original strand, 22630388 - 22630550
Alignment:
Q  98 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaat 196  Q
    |||||||| |||| | ||||| | ||||||| |  |||||||||||| |||| || ||||||| || ||||||| |||||||  || | ||||||||| |    
T  22630388 ttacacacgtggcctaccacataagcgttgaataagtcaaaattgaccaaaaggaccaaagatacaaagaggctgaatcttagggggctaaaattgtagt 22630487  T
Q  197 ttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 257  Q
    |||||||  |||  |||||||||||||| ||||| |||||||  | || ||||||||||||||    
T  22630488 ttttgtaattagggggccaaaattgcaagtttttgaaagttatggagggaaaagtgcacttta 22630550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 257
Target Start/End: Complemental strand, 43899610 - 43899451
Alignment:
Q  98 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaag-gtcaaaattgtaat 196  Q
    |||||| | ||||||||||| || || ||||||  |||||||||| | |||||||||||||||| | |   ||||| | ||| || | ||||||||||||    
T  43899610 ttacacgcgtggcatgccactca-gctttgactaagtcaaaattggccaaaaagatcaaagatgtaaatgtgctaatttttagagagccaaaattgtaat 43899512  T
Q  197 ttttgtacatagaaggccaaaattgcaactttttaaaagttaggggaaaaagtgcacttta 257  Q
    |||| ||  ||||||  ||||||||||| ||||| ||||||| |||||||| || ||||||    
T  43899511 ttttatatttagaagatcaaaattgcaagtttttgaaagttaagggaaaaaatgtacttta 43899451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 185 - 262
Target Start/End: Original strand, 11662575 - 11662654
Alignment:
Q  185 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcactttaacctt 262  Q
    ||||||| || ||||||||||||||  || |||||||||| ||||| |||||||  |||| |||| ||||||||||||||    
T  11662575 caaaattatagtttttgtacatagagagctaaaattgcaagtttttgaaagttaaggggggaaaaatgcactttaacctt 11662654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 257
Target Start/End: Original strand, 3227554 - 3227692
Alignment:
Q  122 gcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggt-caaaattgtaatttttgtacatagaaggccaaaatt 220  Q
    |||||||||  |||||||||||  |||| || ||||| ||||  | ||||||||||||  ||| | |||||||  |||| |||| |||  ||||||||||    
T  3227554 gcgttgactaggtcaaaattgatcaaaaggaccaaagttgcaatggggctaaatcttaggggtgctaaattgtggttttggtacttagggggccaaaatt 3227653  T
Q  221 gcaactttttaaaagtta--ggggaaaaagtgcacttta 257  Q
    |||| ||||| |||||||  |||| ||||||||||||||    
T  3227654 gcaagtttttgaaagttagggggggaaaagtgcacttta 3227692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 255
Target Start/End: Original strand, 14999126 - 14999249
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaag-gtcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    ||||||||||||  ||| || |||||||||| || ||||||||||||  | | |||||||||| ||||||||  |||  || ||||||||||| |||| |    
T  14999126 gtcaaaattgacctaaaggaacaaagatgcaaaggggctaaatcttagggcgccaaaattgtagtttttgtatttagggggtcaaaattgcaagttttga 14999225  T
Q  232 aaagttaggggaaaaagtgcactt 255  Q
    ||| |  |||| ||||||||||||    
T  14999226 aaattaggggggaaaagtgcactt 14999249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 5111637 - 5111694
Alignment:
Q  185 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggg 242  Q
    |||||||||||||||| |  ||||| ||| ||||| |||||||||||||| |||||||    
T  5111637 caaaattgtaattttttttaatagagggcaaaaatcgcaactttttaaaacttagggg 5111694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 20163585 - 20163637
Alignment:
Q  190 ttgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttagggg 242  Q
    ||||| |||||||||||||   ||||||||||||| ||||| |||||||||||    
T  20163585 ttgtagtttttgtacatagggagccaaaattgcaagtttttgaaagttagggg 20163637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 125 - 257
Target Start/End: Complemental strand, 60228 - 60093
Alignment:
Q  125 ttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgca 223  Q
    ||||||| |||||||||||| ||||||| |||||||||| || ||||||||| ||  || ||||||||||| ||||| |||||||  || ||||||||||    
T  60228 ttgacttggtcaaaattgaccaaaaagaccaaagatgcaaaggggctaaatcatagggggtcaaaattgtagtttttatacatagggggtcaaaattgca 60129  T
Q  224 actttttaaaagttagggga--aaaagtgcacttta 257  Q
    | |||||||||||||| |||  ||||||||||||||    
T  60128 agtttttaaaagttagaggaggaaaagtgcacttta 60093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 125 - 257
Target Start/End: Original strand, 61422 - 61557
Alignment:
Q  125 ttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaattgtaatttttgtacatagaaggccaaaattgca 223  Q
    ||||||| |||||||||||| |||| || |||||||||| |  ||||||||| ||   || ||||||| || ||||||||| |||  ||| |||||||||    
T  61422 ttgacttggtcaaaattgaccaaaaggaccaaagatgcaaaagggctaaatcatagggggccaaaattatagtttttgtacttagggggctaaaattgca 61521  T
Q  224 actttttaaaagttagggga--aaaagtgcacttta 257  Q
    | ||||| ||| ||| ||||  ||||||||||||||    
T  61522 agtttttgaaaattaagggaggaaaagtgcacttta 61557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 7e-23; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 134 - 257
Target Start/End: Original strand, 16704469 - 16704595
Alignment:
Q  134 tcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaa 232  Q
    ||||||||||| |||| ||||| || |||| ||||||||||||||||||| ||||||||||| ||||||||| |||  || ||||||||||| ||||| |    
T  16704469 tcaaaattgacaaaaaggatcatagttgcaaagaggctaaatcttaaaggatcaaaattgtagtttttgtacttagggggtcaaaattgcaagtttttga 16704568  T
Q  233 aagttagggga--aaaagtgcacttta 257  Q
    |||||| ||||  ||||||||||||||    
T  16704569 aagttaagggaggaaaagtgcacttta 16704595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 133 - 260
Target Start/End: Original strand, 1829574 - 1829704
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||||| |||| || |||||||||| || ||||||||||||  || | ||||||||| ||||| ||| |||  || ||||||||||| ||||||    
T  1829574 gtcaaaattgaccaaaatgaccaaagatgcaaaggggctaaatcttagggggccaaaattgtagtttttatacttagggggtcaaaattgcaagttttta 1829673  T
Q  232 aaagttagggg--aaaaagtgcactttaacc 260  Q
    |||||||||||  ||||||||||||||||||    
T  1829674 aaagttagggggaaaaaagtgcactttaacc 1829704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 99 - 257
Target Start/End: Complemental strand, 27437992 - 27437831
Alignment:
Q  99 tacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatt 197  Q
    |||||||||||||||||| |   ||||||| || |||||||||| | |||| || ||||| |||| ||  |||||||||||  || ||||||||||| ||    
T  27437992 tacacacatggcatgccaaatcagcgttgatttggtcaaaattggccaaaaggaccaaagttgcaaaggagctaaatcttagggggtcaaaattgtagtt 27437893  T
Q  198 tttgtacatagaaggccaaaattgcaactttttaaaagtt-agggga-aaaagtgcacttta 257  Q
    ||| |  ||||  |||||||||||||||||||| |||||| |||||| ||||||||||||||    
T  27437892 tttatttatagggggccaaaattgcaacttttttaaagttaaggggagaaaagtgcacttta 27437831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 125 - 257
Target Start/End: Original strand, 6842246 - 6842381
Alignment:
Q  125 ttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgca 223  Q
    ||||||| |||||||||| | |||| ||||||||||||| | || |||||| |||| |  | ||||||||| |||||| ||||||  |||||||||||||    
T  6842246 ttgacttggtcaaaattggccaaaaggatcaaagatgcaaacagactaaattttaaggaactaaaattgtagtttttgcacatagggggccaaaattgca 6842345  T
Q  224 actttttaaaagtt--aggggaaaaagtgcacttta 257  Q
    ||||||| ||| ||  ||||| ||||||||||||||    
T  6842346 actttttgaaacttagagggggaaaagtgcacttta 6842381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 257
Target Start/End: Complemental strand, 7315052 - 7314883
Alignment:
Q  90 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaa 188  Q
    ||||||| |||||||| |||| ||||||  | ||||||| |  |||||||||||| |||| || |||||||||| || ||||||||||||   |||||||    
T  7315052 ttaattaattacacacgtggcctgccacgtaggcgttgaataagtcaaaattgaccaaaatgaccaaagatgcaaaggggctaaatcttagggggtcaaa 7314953  T
Q  189 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt--aggggaaaaagtgcacttta 257  Q
    |||||  ||||  ||| |||  |||||||||||||| ||||| ||||||  ||||| ||||||||||||||    
T  7314952 attgttgttttgatacttag-gggccaaaattgcaagtttttgaaagttagagggggaaaagtgcacttta 7314883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 239
Target Start/End: Complemental strand, 26574748 - 26574642
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||||| ||||||||||||| |||| || ||||||||||||| || ||||||| ||| ||||||||| |||| |  ||||||||||| |||||     
T  26574748 gtcaaaattgacaaaaaagatcaaagttgcaaaggggctaaatcttaagggatcaaaat-gtagtttttgtacttagaggttcaaaattgcaagtttttg 26574650  T
Q  232 aaagttag 239  Q
    ||||||||    
T  26574649 aaagttag 26574642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 262
Target Start/End: Original strand, 3333005 - 3333129
Alignment:
Q  141 tgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttag 239  Q
    ||||||||| |||||||| |||| || |||||||| ||| ||| | ||||||||| |||||||||||||  ||||||||| |||||||||| ||| ||||    
T  3333005 tgactaaaaggatcaaagttgcaaaggggctaaattttagagggttaaaattgtagtttttgtacatagggggccaaaatcgcaactttttcaaacttag 3333104  T
Q  240 --gggaaaaagtgcactttaacctt 262  Q
      ||| ||||||||| |||| ||||    
T  3333105 aaggggaaaagtgcaatttagcctt 3333129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 185 - 257
Target Start/End: Original strand, 30495722 - 30495794
Alignment:
Q  185 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttaggggaaaaagtgcacttta 257  Q
    ||||||||| ||||||||||||||  |   ||||| |||||||||| ||||||||||||||||||||||||||    
T  30495722 caaaattgttatttttgtacataggggattaaaatcgcaactttttgaaagttaggggaaaaagtgcacttta 30495794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 259
Target Start/End: Complemental strand, 5658886 - 5658757
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||||| |||| |||||||| |||| |  ||||||||||||| || ||||||||||| |||||||||||||    | ||||||  |||||||||    
T  5658886 gtcaaaattgaccaaaaggatcaaagttgcaaatgggctaaatcttaagggatcaaaattgtagtttttgtacatagggaactaaaattataacttttta 5658787  T
Q  232 aaagtta--ggggaaaaagtgcactttaac 259  Q
    ||| |||  |||| |||| |||||||||||    
T  5658786 aaacttaaggggggaaaaatgcactttaac 5658757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 242
Target Start/End: Original strand, 10785884 - 10785994
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    ||||||||||   |||| |||||||| |||| || ||||||||||||| || | ||||||||| ||||||||| |||  ||  |||||||||| ||||||    
T  10785884 gtcaaaattggtaaaaaggatcaaagttgcaaaggggctaaatcttaaggggttaaaattgtagtttttgtacttagggggttaaaattgcaaattttta 10785983  T
Q  232 aaagttagggg 242  Q
    |||||||||||    
T  10785984 aaagttagggg 10785994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 90 - 257
Target Start/End: Original strand, 7316222 - 7316392
Alignment:
Q  90 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaa-aggtcaaa 188  Q
    ||||||| |||||||| |||| ||||||  | ||||||| |  |||||||||||| |||| || || ||||||| || |||||||||||||  || ||||    
T  7316222 ttaattaattacacacgtggcttgccacgtaggcgttgaataagtcaaaattgaccaaaaggaccatagatgcaaaggggctaaatcttaaggggccaaa 7316321  T
Q  189 attgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 257  Q
    |||||  |||   ||  |||  |||||||||||||| ||||| |||||||  |||| ||||||||||||||    
T  7316322 attgtggtttcaatatttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcacttta 7316392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 185 - 262
Target Start/End: Complemental strand, 1828816 - 1828737
Alignment:
Q  185 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt--aggggaaaaagtgcactttaacctt 262  Q
    ||||||| ||||||||| || || || ||||||||||||| ||||||||| ||  |||||||||| ||||||||| ||||    
T  1828816 caaaattataatttttgaacttaaaaagccaaaattgcaaatttttaaaaattaaaggggaaaaaatgcactttagcctt 1828737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 185 - 262
Target Start/End: Complemental strand, 29473154 - 29473075
Alignment:
Q  185 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcactttaacctt 262  Q
    ||||||||| |||||||| |||||    |||||||||||||||||||||| |||  |||| |||||||||||| ||||||    
T  29473154 caaaattgttatttttgttcatagggaaccaaaattgcaactttttaaaacttaaggggggaaaagtgcacttgaacctt 29473075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 99 - 257
Target Start/End: Original strand, 49370 - 49531
Alignment:
Q  99 tacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatt 197  Q
    |||||||||||||||||| |   ||||||| || |||||||||| | |||| || ||||| |||| ||  |||||||||||  || ||||||||||| ||    
T  49370 tacacacatggcatgccaaatcagcgttgatttggtcaaaattggccaaaaggaccaaagttgcaaaggagctaaatcttagggggtcaaaattgtagtt 49469  T
Q  198 tttgtacatagaaggccaaaattgcaactttttaaaagtt-agggga-aaaagtgcacttta 257  Q
    ||| |  ||||  |||||||||||||||||||| |||||| |||||| ||||||||||||||    
T  49470 tttatttatagggggccaaaattgcaacttttttaaagttaaggggagaaaagtgcacttta 49531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 181 - 257
Target Start/End: Complemental strand, 18809 - 18731
Alignment:
Q  181 aggtcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 257  Q
    |||||||||||||| ||||||| ||||| ||| |||||| ||||||||||||||||||   ||||||||||||||||||    
T  18809 aggtcaaaattgtagtttttgttcataggaggtcaaaatcgcaactttttaaaagttaagagggaaaaagtgcacttta 18731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 185 - 257
Target Start/End: Complemental strand, 17547 - 17473
Alignment:
Q  185 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 257  Q
    |||||||||| ||||||||| |||  |||||||||||||| |||||||||||||  |||||||||||||||||||    
T  17547 caaaattgtagtttttgtacttagggggccaaaattgcaagtttttaaaagttaagggggaaaaagtgcacttta 17473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 133 - 257
Target Start/End: Original strand, 18747 - 18874
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||||| |||| ||| |||| ||||  | |||||||| |||| || | |||||| || ||||||||| |||  | |||||||||||| ||||||    
T  18747 gtcaaaattgaccaaaatgattaaagttgcaatggggctaaattttaaggggccaaaattatagtttttgtacctaggggaccaaaattgcaaattttta 18846  T
Q  232 aaagttag--gggaaaaagtgcacttta 257  Q
    ||||||||  ||||||||||||||||||    
T  18847 aaagttaggagggaaaaagtgcacttta 18874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 133 - 257
Target Start/End: Original strand, 8998 - 9123
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgca-gagaggctaaatcttaaaggtcaaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    ||||||||||   |||| ||||||||||||| ||| ||||||||||||  || |||||||||| ||||||||||||| |||| |||||  |||||||||     
T  8998 gtcaaaattggtcaaaaggatcaaagatgcatgag-ggctaaatcttaggggccaaaattgtagtttttgtacataggaggcaaaaatcacaactttttg 9096  T
Q  232 aaagttagg-ggaaaaagtgcacttta 257  Q
    ||| | ||| |||||||||||||||||    
T  9097 aaattaaggaggaaaaagtgcacttta 9123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 154 - 261
Target Start/End: Complemental strand, 6452 - 6342
Alignment:
Q  154 caaagatgcagagaggctaaatcttaaagg-tcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtg 250  Q
    |||||||||| | |||||||||||||  || ||||||||||| |||||||||||||  ||| ||||| | |||||||| ||| |||  || | |||||||    
T  6452 caaagatgcaaaaaggctaaatcttagggggtcaaaattgtagtttttgtacatagggggctaaaatcgtaactttttgaaacttaagggcggaaaagtg 6353  T
Q  251 cactttaacct 261  Q
    |||||||||||    
T  6352 cactttaacct 6342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1303 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold1303
Description:

Target: scaffold1303; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 125 - 257
Target Start/End: Complemental strand, 1577 - 1442
Alignment:
Q  125 ttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaattgtaatttttgtacatagaaggccaaaattgca 223  Q
    ||||||| |||||||||||| |||| || |||||||||| |  ||||||||||||   |||||||||| || ||||| |||||||  || ||||||||||    
T  1577 ttgacttggtcaaaattgaccaaaaggaccaaagatgcaaatgggctaaatcttagggggtcaaaattatagtttttatacatagggggtcaaaattgca 1478  T
Q  224 actttttaaaagtt--aggggaaaaagtgcacttta 257  Q
    | ||||| ||||||  ||||| |||||| |||||||    
T  1477 agttttttaaagttagagggggaaaagtacacttta 1442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 13267 - 13191
Alignment:
Q  186 aaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttaggggaaaaagtgcactttaacctt 262  Q
    ||||||||| |||| |||||||| ||| ||||||  ||||||||| ||||||||||| |||||||||||||| ||||    
T  13267 aaaattgtagttttcgtacataggaggtcaaaatcacaactttttcaaagttagggggaaaagtgcactttagcctt 13191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2034 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold2034
Description:

Target: scaffold2034; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 257
Target Start/End: Complemental strand, 397 - 236
Alignment:
Q  98 ttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaat 196  Q
    |||||||| |||||||||||| | ||||||||   ||||||||||   |||| ||||||| ||||| || |||||| |||||  || | |||||| || |    
T  397 ttacacacgtggcatgccacataggcgttgaccg-gtcaaaattgggaaaaaggatcaaatatgcaaaggggctaattcttaggggaccaaaattatagt 299  T
Q  197 ttttgtacatagaaggccaaaattgcaactttttaaaagtta--ggggaaaaagtgcacttta 257  Q
    ||||||||||||  | |||||||||||||||||| |||||||  ||||  |||||||||||||    
T  298 ttttgtacataggggaccaaaattgcaactttttgaaagttaagggggggaaagtgcacttta 236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2034; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 1002 - 1055
Alignment:
Q  185 caaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta 238  Q
    ||||||| || ||||||||||||   | ||||||||||||||||||||||||||    
T  1002 caaaattatagtttttgtacataagggaccaaaattgcaactttttaaaagtta 1055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 224
Target Start/End: Complemental strand, 19661 - 19526
Alignment:
Q  90 ttaattatttacacacatggcatgccacacatgcgttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaagg-tcaaa 188  Q
    ||||||| |||||||  |||| ||||||  | ||||||| |  |||||||||||| |||| ||||||||||||| || || |||||||||  || |||||    
T  19661 ttaattaattacacatgtggcctgccacgtaggcgttgaataagtcaaaattgaccaaaatgatcaaagatgcaaaggggttaaatcttaggggatcaaa 19562  T
Q  189 attgtaatttttgtacatagaaggccaaaattgcaa 224  Q
    |||||| ||||| ||| |||  ||||||||||||||    
T  19561 attgtagtttttatacttagggggccaaaattgcaa 19526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 23145 - 23084
Alignment:
Q  196 tttttgtacatagaaggccaaaattgcaactttttaaaagttaggggaaaaagtgcacttta 257  Q
    |||| |||| |||| || ||||||||||| ||||| ||||||||||| ||||||||||||||    
T  23145 ttttggtacttagagggacaaaattgcaagtttttgaaagttagggggaaaagtgcacttta 23084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 262
Target Start/End: Original strand, 7394 - 7518
Alignment:
Q  141 tgactaaaaagatcaaagatgcagagaggctaaatctta-aaggtcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtt-- 237  Q
    ||||||||| |||||||| |||| || ||||||||||||   ||||||||||||| ||| |||||||||  || |||||| | |||||||| ||| ||      
T  7394 tgactaaaaggatcaaagttgcaaaggggctaaatcttagggggtcaaaattgtagtttctgtacatagggggtcaaaatcgtaactttttcaaacttag 7493  T
Q  238 aggggaaaaagtgcactttaacctt 262  Q
    ||||| | |||||||||||| ||||    
T  7494 agggggacaagtgcactttagcctt 7518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 247
Target Start/End: Complemental strand, 3805 - 3690
Alignment:
Q  133 gtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggtc-aaaattgtaatttttgtacatagaaggccaaaattgcaacttttta 231  Q
    |||||||||||| |||||||| |||| ||||  | ||||||||||||  || | |||||| || ||| | |||  ||  |||||||||||||| |||||     
T  3805 gtcaaaattgaccaaaaagattaaagttgcaatgcggctaaatcttaggggactaaaattatagtttctttactcagggggccaaaattgcaagtttttg 3706  T
Q  232 aaagttaggggaaaaa 247  Q
    ||||||||||||||||    
T  3705 aaagttaggggaaaaa 3690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 182 - 257
Target Start/End: Original strand, 4751 - 4827
Alignment:
Q  182 ggtcaaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagttaggg-gaaaaagtgcacttta 257  Q
    ||||||||||||| ||| ||||  |||  |||||||||||||  |||||||||||||||| |  |||||||||||||    
T  4751 ggtcaaaattgtagtttctgtatttagggggccaaaattgcatgtttttaaaagttagggagggaaagtgcacttta 4827  T

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Target: scaffold0112 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 257
Target Start/End: Complemental strand, 37224 - 37151
Alignment:
Q  185 caaaattgtaatttttgtacatagaaggccaaaattgcaacttttt-aaaagttaggggaaaaagtgcacttta 257  Q
    |||||||||  ||||||||| |||  || ||||||||||| ||||| ||||| |||||| ||||||||||||||    
T  37224 caaaattgttgtttttgtacttagggggtcaaaattgcaaattttttaaaagatagggggaaaagtgcacttta 37151  T

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Target: scaffold0294 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 125 - 257
Target Start/End: Original strand, 5401 - 5536
Alignment:
Q  125 ttgactttgtcaaaattgactaaaaagatcaaagatgcagagaggctaaatcttaaaggt-caaaattgtaatttttgtacatagaaggccaaaattgca 223  Q
    ||||||| ||||||||| || |||| |||||||  || |  | ||||||||||||| ||  |||||||||| ||||||||| ||   || ||||||||||    
T  5401 ttgacttggtcaaaattaaccaaaaggatcaaatttgtaatggggctaaatcttaagggggcaaaattgtagtttttgtacttaaggggtcaaaattgca 5500  T
Q  224 actttttaaaagtta--ggggaaaaagtgcacttta 257  Q
    | ||||| ||| |||  |||| ||||||||||||||    
T  5501 agtttttgaaaattagggggggaaaagtgcacttta 5536  T

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Target: scaffold0045 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 49109 - 49161
Alignment:
Q  186 aaaattgtaatttttgtacatagaaggccaaaattgcaactttttaaaagtta 238  Q
    ||||||||| ||||  ||| ||| ||||||||||||||| |||||||||||||    
T  49109 aaaattgtagttttaatacttaggaggccaaaattgcaagtttttaaaagtta 49161  T

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