View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_81 (Length: 336)
Name: NF17277_low_81
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_81 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 33 - 319
Target Start/End: Complemental strand, 7717418 - 7717134
Alignment:
| Q |
33 |
tggaattgtctgcttgtaattccatcctgtcaagttctaggcgatttcgtgtgatgaatcttaccaacacaaagtcaacgaagattccatctagtattgg |
132 |
Q |
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| T |
7717418 |
tggaactgtctgcgtgtaattccatcctgtcaagttcgagacgatttcgt-tgatgaatcttaccaacacaaagtcaacgaagattccatctagtattgg |
7717320 |
T |
|
| Q |
133 |
aaggatgaaacatctaagctatcttgatctttctcattgttataaggttgaagagctcccaaggtcaataactcaattatttaacttggagactcgtttg |
232 |
Q |
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|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||| |
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| T |
7717319 |
aaggatgaaacatctaagatattgtgatctttctcattgttataaggttgaagagctcc-aaggtctataactcaattatttaacttggagactcttttg |
7717221 |
T |
|
| Q |
233 |
ctcaattcgtgtattcacttgagagagttgcccaaagatatctggaagttggtaagtcttagacatcttgagttggatgattgtaat |
319 |
Q |
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| T |
7717220 |
ctcaattcgtgtagtcacttgagagagttgcccaaagatatttggaagttggtaagtcttagacatcttgagttggatgattgtaat |
7717134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 6 - 315
Target Start/End: Complemental strand, 7721277 - 7720968
Alignment:
| Q |
6 |
gtccaagaatatatagtgaaagtctattggaattgtctgcttgtaattccatcctgtcaagttctaggcgatttcgtgtgatgaatcttaccaacacaaa |
105 |
Q |
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|||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7721277 |
gtccaatattatatagtgaaagtctattggaattgtctgcttgtaattccattctgtcaagttctaggcgatttcgtgtgatgaatcttaccaacacaaa |
7721178 |
T |
|
| Q |
106 |
gtcaacgaagattccatctagtattggaaggatgaaacatctaagctatcttgatctttctcattgttataaggttgaagagctcccaaggtcaataact |
205 |
Q |
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| T |
7721177 |
gtcaacgaagattccatctagtattggaaggatgaaacatctaagatatcttgacctttcttgttgtgatatggttgaggagctcccaaggtctataact |
7721078 |
T |
|
| Q |
206 |
caattatttaacttggagactcgtttgctcaattcgtgtattcacttgagagagttgcccaaagatatctggaagttggtaagtcttagacatcttgagt |
305 |
Q |
| |
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||||| ||||||||||||||| ||| ||||||| ||| | | ||||||||||||||||||||| | | |||||||||||||||| |||||||||||| |
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| T |
7721077 |
gaattaattaacttggagactcttttactcaatttttgttctaaattgagagagttgcccaaagatctttagaagttggtaagtcttcgacatcttgagt |
7720978 |
T |
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| Q |
306 |
tggatgattg |
315 |
Q |
| |
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||||| |||| |
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| T |
7720977 |
tggattattg |
7720968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 35 - 316
Target Start/End: Original strand, 7521219 - 7521500
Alignment:
| Q |
35 |
gaattgtctgcttgtaattccatcctgtcaagttctaggcgatttcgtgtgatgaatcttaccaacacaaagtcaacgaagattccatctagtattggaa |
134 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||| | | | |||||||| ||||||||| ||||||| | |
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| T |
7521219 |
gaattgtctgcttgtaattccatcctggcaagttctagacgatttcgtgtgctgaatcttagcttaatgtattcaacgaatattccatcttgtattggta |
7521318 |
T |
|
| Q |
135 |
ggatgaaacatctaagctatcttgatctttctcattgttataaggttgaagagctcccaaggtcaataactcaattatttaacttggagactcgtttgct |
234 |
Q |
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| |||||||| ||||| ||||||||||||||| ||||| |||||||||||||||||||||||| |||||| ||||| ||||||||||||||| ||| || |
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| T |
7521319 |
gaatgaaacagctaaggtatcttgatctttcttgttgttttaaggttgaagagctcccaaggtctataactgaattagttaacttggagactcttttact |
7521418 |
T |
|
| Q |
235 |
caattcgtgtattcacttgagagagttgcccaaagatatctggaagttggtaagtcttagacatcttgagttggatgattgt |
316 |
Q |
| |
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|||| |||| | | ||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
7521419 |
caataggtgttctaaattgagagagttgcccaaagatctttggaagttggtaattcttagacatcttgagttggatgattgt |
7521500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 35 - 310
Target Start/End: Original strand, 7495561 - 7495836
Alignment:
| Q |
35 |
gaattgtctgcttgtaattccatcctgtcaagttctaggcgatttcgtgtgatgaatcttaccaacacaaagtcaacgaagattccatctagtattggaa |
134 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||| | || || | |||||| ||||||||| ||||||| | |
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| T |
7495561 |
gaattgtctgcttgtaattccatcctggcaagttctagacgatttcgtgtgctgaatcttagcttcatgaatttaacgaatattccatcttgtattggta |
7495660 |
T |
|
| Q |
135 |
ggatgaaacatctaagctatcttgatctttctcattgttataaggttgaagagctcccaaggtcaataactcaattatttaacttggagactcgtttgct |
234 |
Q |
| |
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| |||||||| ||||| ||||||||||||||| ||||| || ||||||||||||||||||||| |||||| ||||| ||||||||||||||| ||| || |
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| T |
7495661 |
gaatgaaacagctaaggtatcttgatctttcttgttgttttatggttgaagagctcccaaggtctataactgaattagttaacttggagactcttttact |
7495760 |
T |
|
| Q |
235 |
caattcgtgtattcacttgagagagttgcccaaagatatctggaagttggtaagtcttagacatcttgagttggat |
310 |
Q |
| |
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|||| |||| | | ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
7495761 |
caataggtgttctaaattgagagagttgcccaaagatctttggaagttggtaagtcttagacatcttgagttggat |
7495836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 35 - 316
Target Start/End: Complemental strand, 7127973 - 7127692
Alignment:
| Q |
35 |
gaattgtctgcttgtaattccatcctgtcaagttctaggcgatttcgtgtgatgaatcttaccaacacaaagtcaacgaagattccatctagtattggaa |
134 |
Q |
| |
|
||||| |||||| |||||||||||||| |||||||||| |||||||||||| ||||||||| | || || | |||||| ||||||||| ||||||| | |
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| T |
7127973 |
gaattatctgctagtaattccatcctggcaagttctagacgatttcgtgtgctgaatcttagcttcatgaatttaacgaatattccatcttgtattggta |
7127874 |
T |
|
| Q |
135 |
ggatgaaacatctaagctatcttgatctttctcattgttataaggttgaagagctcccaaggtcaataactcaattatttaacttggagactcgtttgct |
234 |
Q |
| |
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| |||||||| ||||| ||||||||||||||| ||||| || ||||||||||||||||||||| |||||| ||||| ||||||||||||||| ||| || |
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| T |
7127873 |
gaatgaaacagctaaggtatcttgatctttcttgttgttttatggttgaagagctcccaaggtctataactgaattagttaacttggagactcttttact |
7127774 |
T |
|
| Q |
235 |
caattcgtgtattcacttgagagagttgcccaaagatatctggaagttggtaagtcttagacatcttgagttggatgattgt |
316 |
Q |
| |
|
|||| |||| | | |||| |||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7127773 |
caataggtgttctaaattgaaagagttgcccaaagatctttggaagttggtaagccttagacatcttgagttggatgattgt |
7127692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 35 - 316
Target Start/End: Original strand, 7529284 - 7529565
Alignment:
| Q |
35 |
gaattgtctgcttgtaattccatcctgtcaagttctaggcgatttcgtgtgatgaatcttaccaacacaaagtcaacgaagattccatctagtattggaa |
134 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||| |||||||||||| ||||||||| | | || | |||||| ||||||||| ||||||| | |
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| T |
7529284 |
gaattgtgtgcttgtaattccatcctggcaagttctagacgatttcgtgtgctgaatcttagcttcctgaatttaacgaatattccatcttgtattggta |
7529383 |
T |
|
| Q |
135 |
ggatgaaacatctaagctatcttgatctttctcattgttataaggttgaagagctcccaaggtcaataactcaattatttaacttggagactcgtttgct |
234 |
Q |
| |
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| |||||||| ||||| ||||||||||||||| ||||| || ||||||||||||||||||||| |||||| ||||| ||||||||||||||| ||| || |
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|
| T |
7529384 |
gaatgaaacagctaaggtatcttgatctttcttgttgttttatggttgaagagctcccaaggtctataactgaattagttaacttggagactcttttact |
7529483 |
T |
|
| Q |
235 |
caattcgtgtattcacttgagagagttgcccaaagatatctggaagttggtaagtcttagacatcttgagttggatgattgt |
316 |
Q |
| |
|
|||| |||| | | ||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||| ||||| |
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|
| T |
7529484 |
caataggtgttctaaattgagagagttgcccaaagatctttggaagttagtaagtcttagacatcttgagttggattattgt |
7529565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 35 - 316
Target Start/End: Original strand, 7483165 - 7483443
Alignment:
| Q |
35 |
gaattgtctgcttgtaattccatcctgtcaagttctaggcgatttcgtgtgatgaatcttaccaacacaaagtcaacgaagattccatctagtattggaa |
134 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||| |||||||||||| ||||||||| ||| | | |||| ||| ||||||||| ||||||| | |
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|
| T |
7483165 |
gaattgtctgcctgtaattccatcatgtcaagttctagacgatttcgtgtgctgaatctta---acatagaatcaaagaatattccatcttgtattggta |
7483261 |
T |
|
| Q |
135 |
ggatgaaacatctaagctatcttgatctttctcattgttataaggttgaagagctcccaaggtcaataactcaattatttaacttggagactcgtttgct |
234 |
Q |
| |
|
| |||||||||||||| |||||||| |||||| ||||| | |||||| ||||||||||||||||||||| | ||| ||||||||||||||| ||| || |
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|
| T |
7483262 |
gaatgaaacatctaaggtatcttgacctttcttattgtagaatggttgaggagctcccaaggtcaataactgatttagttaacttggagactcttttact |
7483361 |
T |
|
| Q |
235 |
caattcgtgtattcacttgagagagttgcccaaagatatctggaagttggtaagtcttagacatcttgagttggatgattgt |
316 |
Q |
| |
|
|||| ||||| |||||||| |||||||||||||||| | ||||| | |||||| ||||| ||||||||||||||| ||||| |
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|
| T |
7483362 |
taattggtgtactcacttgaaagagttgcccaaagatctttggaaatgggtaagacttaggcatcttgagttggattattgt |
7483443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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