View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_82 (Length: 333)
Name: NF17277_low_82
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_82 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 307
Target Start/End: Original strand, 13106817 - 13107109
Alignment:
| Q |
13 |
cagatcctaagtcaatactactagaccaacccaactggatttattactacacaattttaaatgtaaaaggtaccgagtttaaatgtttaaacaatgtctt |
112 |
Q |
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| T |
13106817 |
cagatcccaaatcaatactactagatcaacccaactgggtttattactacacaattttaaatgtaaaaggtatcgaatttaaataattaaacaatgtctt |
13106916 |
T |
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| Q |
113 |
aagagtatttattt--atttttcataaaaataaatcaataaataacttgggtatgtttatgtctgctataagattagatgagatgtgtgtcaattgaaga |
210 |
Q |
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| T |
13106917 |
aagagtacttattagcatttttcataaaaaaaaaa----aaaaaatttgggaaggtttatgtctactataagattagatgagatgtgtgtcaattgaaga |
13107012 |
T |
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| Q |
211 |
gaccttaagaaatattaatttgattctttattgcatctgcaaaaatatcatttctttgtatgaagaagggaaaccaccttcttctatttctacatcc |
307 |
Q |
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| T |
13107013 |
gacctttagaaatgttaatttgattctttattgtatctgcaaaaatagcatttctttgtatgaagaagggaaaccaccttcttctatttctacatcc |
13107109 |
T |
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Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 225 - 314
Target Start/End: Original strand, 13220640 - 13220729
Alignment:
| Q |
225 |
ttaatttgattctttattgcatctgcaaaaatatcatttctttgtatgaagaagggaaaccaccttcttctatttctacatccaggatcc |
314 |
Q |
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| T |
13220640 |
ttaatttgattctttattgtatctgcaaaaatagcatttctttgtatgaagaagggaaaccaccttcttctatttctacatccaggatcc |
13220729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 225 - 314
Target Start/End: Complemental strand, 6127731 - 6127641
Alignment:
| Q |
225 |
ttaatttgattctttattgcatctgcaaaaatatcatttctttgtatgaagaagggaaaccaccttcttctatttctac-atccaggatcc |
314 |
Q |
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| T |
6127731 |
ttaatttgattctttattgtatctgcaaaaatatcatttctttgtatgaagaagggaaaccaccttcttctatttctacaatccaggatcc |
6127641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 283
Target Start/End: Complemental strand, 28680886 - 28680828
Alignment:
| Q |
225 |
ttaatttgattctttattgcatctgcaaaaatatcatttctttgtatgaagaagggaaa |
283 |
Q |
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||||||||||||||||| | |||| |||||||||||| |||||| |||||||||||||| |
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| T |
28680886 |
ttaatttgattctttatcgtatctacaaaaatatcatatctttgaatgaagaagggaaa |
28680828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 283
Target Start/End: Original strand, 31860661 - 31860720
Alignment:
| Q |
224 |
attaatttgattctttattgcatctgcaaaaatatcatttctttgtatgaagaagggaaa |
283 |
Q |
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| T |
31860661 |
attaatatgattctttatcgtatctgcaaaaatattatatctttgaatgaagaagggaaa |
31860720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 25297812 - 25297779
Alignment:
| Q |
13 |
cagatcctaagtcaatactactagaccaacccaa |
46 |
Q |
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| T |
25297812 |
cagatcctaagtcaataccactagaccaacccaa |
25297779 |
T |
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