View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17277_low_87 (Length: 327)

Name: NF17277_low_87
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17277_low_87
NF17277_low_87
[»] chr5 (7 HSPs)
chr5 (75-316)||(42518666-42518901)
chr5 (124-203)||(42509329-42509411)
chr5 (38-102)||(42509237-42509305)
chr5 (200-264)||(687293-687353)
chr5 (218-262)||(8040252-8040296)
chr5 (218-262)||(15183964-15184008)
chr5 (218-262)||(33002763-33002807)
[»] chr4 (17 HSPs)
chr4 (218-311)||(36864874-36864962)
chr4 (218-262)||(9939179-9939223)
chr4 (217-306)||(17648053-17648136)
chr4 (200-286)||(36451356-36451432)
chr4 (218-298)||(38143545-38143620)
chr4 (218-261)||(25970162-25970205)
chr4 (218-308)||(29650472-29650557)
chr4 (217-262)||(36865664-36865709)
chr4 (217-262)||(39522431-39522476)
chr4 (218-262)||(9939318-9939362)
chr4 (218-262)||(11417744-11417788)
chr4 (218-262)||(11417884-11417928)
chr4 (218-262)||(11806148-11806192)
chr4 (218-262)||(21166322-21166366)
chr4 (218-262)||(26610402-26610446)
chr4 (218-262)||(26611230-26611274)
chr4 (218-262)||(38143684-38143728)
[»] chr1 (6 HSPs)
chr1 (218-286)||(47334256-47334318)
chr1 (200-262)||(23440660-23440718)
chr1 (218-262)||(48972392-48972436)
chr1 (218-262)||(50827038-50827082)
chr1 (218-262)||(16270264-16270308)
chr1 (218-262)||(16271095-16271139)
[»] chr6 (6 HSPs)
chr6 (217-298)||(22579991-22580067)
chr6 (218-298)||(3542979-3543054)
chr6 (218-262)||(7193395-7193439)
chr6 (218-262)||(15082454-15082498)
chr6 (218-262)||(33018224-33018268)
chr6 (218-262)||(33480575-33480619)
[»] chr3 (10 HSPs)
chr3 (217-262)||(38922799-38922844)
chr3 (218-298)||(19132620-19132695)
chr3 (218-262)||(19132759-19132803)
chr3 (218-262)||(44686311-44686355)
chr3 (218-287)||(45500530-45500593)
chr3 (218-262)||(3971049-3971093)
chr3 (218-262)||(3998788-3998832)
chr3 (218-262)||(32490142-32490186)
chr3 (218-262)||(45242123-45242167)
chr3 (218-262)||(52492226-52492270)
[»] chr2 (5 HSPs)
chr2 (217-262)||(14573946-14573991)
chr2 (218-260)||(4479651-4479693)
chr2 (217-262)||(21471901-21471946)
chr2 (218-262)||(37548055-37548099)
chr2 (218-262)||(38834444-38834488)
[»] scaffold0700 (1 HSPs)
scaffold0700 (217-257)||(5375-5415)
[»] scaffold0041 (1 HSPs)
scaffold0041 (218-262)||(27278-27322)
[»] chr7 (4 HSPs)
chr7 (218-262)||(37864254-37864298)
chr7 (218-262)||(4261262-4261306)
chr7 (218-262)||(17145679-17145723)
chr7 (218-262)||(38071955-38071999)
[»] scaffold0332 (1 HSPs)
scaffold0332 (218-262)||(9205-9249)
[»] chr8 (2 HSPs)
chr8 (218-262)||(5035223-5035267)
chr8 (218-262)||(34992211-34992255)


Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 75 - 316
Target Start/End: Original strand, 42518666 - 42518901
Alignment:
Q  75 agaaaacaaatgttgtaaaagtacatcatcagcctacttactagttacgttactactcaatttatcgtaaattatagtaaaaatttatctcaactagcat 174  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42518666 agaaaacaaatgttgtaaaagtacatcatcagcctacttactatttacgttactactcaatttatcgtaaattatagtaaaaatctatctcaactagcat 42518765  T
Q  175 caatttctacaatatcaaattattcaaaagttgattatgtccatccattagattaaatgagaaacaaattcttatcgtactctctcaatctcaacactag 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||     
T  42518766 caatttctacaatatcaaattattcaaaagttgattatgtccatccattagattaaatgagaaacaaattcttatcgtact------atctcaacactaa 42518859  T
Q  275 attattgttttatattatttttcatcctctctttcatctcac 316  Q
    |||||||||||||| ||||||||| |||||||||||| ||||    
T  42518860 attattgttttatactatttttcaccctctctttcatgtcac 42518901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 124 - 203
Target Start/End: Original strand, 42509329 - 42509411
Alignment:
Q  124 ttactactcaatttatcgtaaattatagtaa--aaatt-tatctcaactagcatcaatttctacaatatcaaattattcaaaa 203  Q
    ||||||||||| |||||| ||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42509329 ttactactcaaattatcgcaaattatagtaataaaattctatctcaactagcatcaatttctacaatatcaaattattcaaaa 42509411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 42509237 - 42509305
Alignment:
Q  38 ttgtgttgagttgtactct---acgagtatctg-atgtttaagaaaacaaatgttgtaaaagtacatca 102  Q
    |||||||||||||||||||   |||||| || | ||||||||||||||||| |||||||||||||||||    
T  42509237 ttgtgttgagttgtactcttctacgagtttcagtatgtttaagaaaacaaacgttgtaaaagtacatca 42509305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 264
Target Start/End: Complemental strand, 687353 - 687293
Alignment:
Q  200 aaaagttgattatgtccatccattagattaaatgagaaacaaattcttatcgtactctctcaatc 264  Q
    |||||||||||||||||||    ||||||||||||| |||| |||| |||| |||||||||||||    
T  687353 aaaagttgattatgtccat----tagattaaatgaggaacatattcctatcatactctctcaatc 687293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 8040252 - 8040296
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    |||||||||||||||||| || | ||||||||| |||||||||||    
T  8040252 tccattagattaaatgaggaatatattcttatcatactctctcaa 8040296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 15184008 - 15183964
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  15184008 tccattagattaaatgaggaacatattcctatcatactctctcaa 15183964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 33002807 - 33002763
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  33002807 tccattagattaaatgaggaacatattcctatcatactctctcaa 33002763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 218 - 311
Target Start/End: Original strand, 36864874 - 36864962
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaatctcaacactagattattgttttatattatttttcatcctctctttcat 311  Q
    ||||||||||||||||||||||| |||| |||| ||||||||||     | |||||||||||| ||||||| ||| |||||| |||||||||||    
T  36864874 tccattagattaaatgagaaacatattcctatcatactctctca-----accactagattatttttttatactatctttcatactctctttcat 36864962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 9939179 - 9939223
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||    
T  9939179 tccattagattaaatgagaaacatattcttatcatactctctcaa 9939223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 306
Target Start/End: Complemental strand, 17648136 - 17648053
Alignment:
Q  217 atccattagattaaatgagaaacaaattcttatcgtactctctcaatctcaacactagattattgttttatattatttttcatcctctct 306  Q
    |||||||||||||||| ||||| ||||||||||| |||||||      ||||||||| |||||||||||| | ||| || ||||||||||    
T  17648136 atccattagattaaataagaaataaattcttatcttactctc------tcaacactatattattgttttacactatcttccatcctctct 17648053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 286
Target Start/End: Complemental strand, 36451432 - 36451356
Alignment:
Q  200 aaaagttgattatgtccatccattagattaaatgagaaacaaattcttatcgtactctctcaatctcaacactagattattgtttta 286  Q
    |||||||||||||||||||    |||||||||||| |||||||| |||||| |||||||      ||||||||||||||||||||||    
T  36451432 aaaagttgattatgtccat----tagattaaatgaaaaacaaatccttatcctactctc------tcaacactagattattgtttta 36451356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 298
Target Start/End: Original strand, 38143545 - 38143620
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaatctcaacactagattattgttttatattatttttca 298  Q
    |||||||||||||||||| |||| |||| |||| ||||||||||     | |||||||||||| ||||||||||| |||||    
T  38143545 tccattagattaaatgaggaacatattcctatcatactctctca-----accactagattatttttttatattatctttca 38143620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 261
Target Start/End: Original strand, 25970162 - 25970205
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctca 261  Q
    ||||||||||||||||||||||||||  ||||| ||||||||||    
T  25970162 tccattagattaaatgagaaacaaatctttatcatactctctca 25970205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 308
Target Start/End: Original strand, 29650472 - 29650557
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaatctcaacactagattattgttttatattatttttcatcctctcttt 308  Q
    |||||||||||||||||| |||| |||| |||| ||||||||||     | |||||||||||| ||||||| ||| |||||  ||||||||    
T  29650472 tccattagattaaatgaggaacatattcctatcatactctctca-----accactagattatttttttatactatctttcacactctcttt 29650557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 262
Target Start/End: Complemental strand, 36865709 - 36865664
Alignment:
Q  217 atccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    ||||||||||||||||||| |||| |||| |||| |||||||||||    
T  36865709 atccattagattaaatgaggaacatattcctatcatactctctcaa 36865664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 262
Target Start/End: Original strand, 39522431 - 39522476
Alignment:
Q  217 atccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    ||||||||||||||||||| |||| |||| |||| |||||||||||    
T  39522431 atccattagattaaatgaggaacatattcctatcatactctctcaa 39522476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 9939362 - 9939318
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  9939362 tccattagattaaatgaggaacatattcctatcatactctctcaa 9939318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 11417744 - 11417788
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  11417744 tccattagattaaatgaggaacatattcctatcatactctctcaa 11417788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 11417928 - 11417884
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  11417928 tccattagattaaatgaggaacatattcctatcatactctctcaa 11417884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 11806148 - 11806192
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    |||||||||||||||||| |||| ||| ||||| |||||||||||    
T  11806148 tccattagattaaatgaggaacacatttttatcctactctctcaa 11806192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 21166366 - 21166322
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  21166366 tccattagattaaatgaggaacatattcctatcatactctctcaa 21166322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 26610402 - 26610446
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  26610402 tccattagattaaatgaggaacatattcctatcatactctctcaa 26610446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 26611274 - 26611230
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  26611274 tccattagattaaatgaggaacatattcctatcatactctctcaa 26611230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 38143728 - 38143684
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  38143728 tccattagattaaatgaggaacatattcctatcatactctctcaa 38143684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 286
Target Start/End: Original strand, 47334256 - 47334318
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaatctcaacactagattattgtttta 286  Q
    |||||||||||||||||||||||||| |||||| |||||      ||||||||||||||||||||||||    
T  47334256 tccattagattaaatgagaaacaaatccttatcctactc------tctcaacactagattattgtttta 47334318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 262
Target Start/End: Original strand, 23440660 - 23440718
Alignment:
Q  200 aaaagttgattatgtccatccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    ||||||||||||||||||    ||||||||||||||||||| |||| |||| |||||||||||    
T  23440660 aaaagttgattatgtcca----ttagattaaatgagaaacatattcctatcatactctctcaa 23440718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 48972436 - 48972392
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    ||||||||||||||||||||||| |||| |||| |||||||||||    
T  48972436 tccattagattaaatgagaaacatattcctatcatactctctcaa 48972392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 50827082 - 50827038
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    ||||||||||||||||||||||| ||| ||||| |||||||||||    
T  50827082 tccattagattaaatgagaaacatatttttatcatactctctcaa 50827038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 16270264 - 16270308
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  16270264 tccattagattaaatgaggaacatattcctatcatactctctcaa 16270308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 16271139 - 16271095
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  16271139 tccattagattaaatgaggaacatattcctatcatactctctcaa 16271095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 298
Target Start/End: Original strand, 22579991 - 22580067
Alignment:
Q  217 atccattagattaaatgagaaacaaattcttatcgtactctctcaatctcaacactagattattgttttatattatttttca 298  Q
    ||||||||||||||||||| |||| |||| |||| ||||||||||||     |||||||||||| ||||||| ||| |||||    
T  22579991 atccattagattaaatgaggaacatattcctatcatactctctcaat-----cactagattatttttttatactatctttca 22580067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 298
Target Start/End: Complemental strand, 3543054 - 3542979
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaatctcaacactagattattgttttatattatttttca 298  Q
    |||||||||||||||||| |||| |||| |||| ||||||||||     | |||||||||||| ||||||||||| |||||    
T  3543054 tccattagattaaatgaggaacatattcctatcatactctctca-----accactagattatttttttatattatctttca 3542979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 7193395 - 7193439
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    |||||||||||||||||| |||| ||||||||| |||||||||||    
T  7193395 tccattagattaaatgaggaacatattcttatcatactctctcaa 7193439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 15082454 - 15082498
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  15082454 tccattagattaaatgaggaacatattcctatcatactctctcaa 15082498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 33018224 - 33018268
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    |||||||||||||||||| |||| ||| ||||| |||||||||||    
T  33018224 tccattagattaaatgaggaacatatttttatcatactctctcaa 33018268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 33480619 - 33480575
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  33480619 tccattagattaaatgaggaacatattcctatcatactctctcaa 33480575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 262
Target Start/End: Original strand, 38922799 - 38922844
Alignment:
Q  217 atccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    |||||||||||||||||||||||| |||| |||| |||||||||||    
T  38922799 atccattagattaaatgagaaacatattcctatcatactctctcaa 38922844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 298
Target Start/End: Original strand, 19132620 - 19132695
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaatctcaacactagattattgttttatattatttttca 298  Q
    |||||||||||||||||| |||| |||| |||| ||||||||||     | |||||||||||| ||||||||||| |||||    
T  19132620 tccattagattaaatgaggaacatattcctatcatactctctca-----accactagattatttttttatattatctttca 19132695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 19132803 - 19132759
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    |||||||||||||||||| |||| ||||||||| |||||||||||    
T  19132803 tccattagattaaatgaggaacatattcttatcatactctctcaa 19132759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 44686311 - 44686355
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    ||||||||||||||||||||||| |||| |||| |||||||||||    
T  44686311 tccattagattaaatgagaaacatattcctatcatactctctcaa 44686355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 287
Target Start/End: Original strand, 45500530 - 45500593
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaatctcaacactagattattgttttat 287  Q
    |||||||||||||||||| |||| ||||||||  |||||      |||||||||||||||||||||||||    
T  45500530 tccattagattaaatgaggaacacattcttattctactc------tctcaacactagattattgttttat 45500593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 3971049 - 3971093
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  3971049 tccattagattaaatgaggaacatattcctatcatactctctcaa 3971093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 3998832 - 3998788
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  3998832 tccattagattaaatgaggaacatattcctatcatactctctcaa 3998788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 32490186 - 32490142
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  32490186 tccattagattaaatgaggaacatattcctatcatactctctcaa 32490142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 45242123 - 45242167
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  45242123 tccattagattaaatgaggaacatattcctatcatactctctcaa 45242167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 52492270 - 52492226
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    |||||||||||||||||| || | ||||||||| |||||||||||    
T  52492270 tccattagattaaatgaggaatacattcttatcatactctctcaa 52492226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 262
Target Start/End: Complemental strand, 14573991 - 14573946
Alignment:
Q  217 atccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    |||||||||||||||||||||||| |||| |||| |||||||||||    
T  14573991 atccattagattaaatgagaaacatattcctatcatactctctcaa 14573946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 4479693 - 4479651
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctc 260  Q
    |||||||||||||||||| |||| ||||||||| |||||||||    
T  4479693 tccattagattaaatgaggaacatattcttatcatactctctc 4479651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 262
Target Start/End: Complemental strand, 21471946 - 21471901
Alignment:
Q  217 atccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    ||||||||||||||||||| |||| |||| |||| |||||||||||    
T  21471946 atccattagattaaatgaggaacatattcctatcatactctctcaa 21471901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 37548055 - 37548099
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  37548055 tccattagattaaatgaggaacatattcctatcatactctctcaa 37548099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 38834444 - 38834488
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    |||||||||||||||||| |||| ||| ||||| |||||||||||    
T  38834444 tccattagattaaatgaggaacatatttttatcatactctctcaa 38834488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0700 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0700
Description:

Target: scaffold0700; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 5375 - 5415
Alignment:
Q  217 atccattagattaaatgagaaacaaattcttatcgtactct 257  Q
    |||||||||||||||||||||||| ||||||||| ||||||    
T  5375 atccattagattaaatgagaaacacattcttatcctactct 5415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 27278 - 27322
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    |||||||||||||||||| |||| ||||||||| |||||||||||    
T  27278 tccattagattaaatgaggaacacattcttatcatactctctcaa 27322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 37864298 - 37864254
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    ||||||||||||||||||||||| |||| |||| |||||||||||    
T  37864298 tccattagattaaatgagaaacatattcctatcatactctctcaa 37864254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 4261262 - 4261306
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    |||||||||||||||||| || | ||||||||| |||||||||||    
T  4261262 tccattagattaaatgaggaatacattcttatcatactctctcaa 4261306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 17145679 - 17145723
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  17145679 tccattagattaaatgaggaacatattcctatcatactctctcaa 17145723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 38071955 - 38071999
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  38071955 tccattagattaaatgaggaacatattcctatcatactctctcaa 38071999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0332 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 9249 - 9205
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    |||||||||||||||||  |||| ||||||||| |||||||||||    
T  9249 tccattagattaaatgatgaacatattcttatcatactctctcaa 9205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 5035267 - 5035223
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    |||||||||||||||||| || | ||||||||| |||||||||||    
T  5035267 tccattagattaaatgaggaatacattcttatcatactctctcaa 5035223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 34992255 - 34992211
Alignment:
Q  218 tccattagattaaatgagaaacaaattcttatcgtactctctcaa 262  Q
    |||||||||||||||||| |||| |||| |||| |||||||||||    
T  34992255 tccattagattaaatgaggaacatattcctatcatactctctcaa 34992211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University