View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17277_low_88 (Length: 327)

Name: NF17277_low_88
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17277_low_88
NF17277_low_88
[»] chr8 (3 HSPs)
chr8 (41-166)||(29608645-29608770)
chr8 (93-161)||(34108906-34108977)
chr8 (90-142)||(32323401-32323453)
[»] chr7 (2 HSPs)
chr7 (41-155)||(25032758-25032874)
chr7 (95-157)||(3404046-3404108)
[»] chr4 (1 HSPs)
chr4 (72-159)||(36690270-36690357)
[»] chr5 (5 HSPs)
chr5 (41-128)||(36409756-36409845)
chr5 (82-147)||(10912144-10912209)
chr5 (72-158)||(25815254-25815340)
chr5 (83-159)||(11857367-11857443)
chr5 (97-161)||(21178344-21178408)
[»] chr3 (3 HSPs)
chr3 (83-161)||(11500512-11500589)
chr3 (45-161)||(36644710-36644831)
chr3 (83-158)||(22516801-22516876)
[»] chr1 (4 HSPs)
chr1 (59-133)||(2758297-2758373)
chr1 (83-141)||(28111530-28111588)
chr1 (84-138)||(16948925-16948979)
chr1 (90-140)||(16904733-16904783)
[»] chr2 (2 HSPs)
chr2 (76-161)||(15545152-15545237)
chr2 (89-128)||(11197471-11197510)


Alignment Details
Target: chr8 (Bit Score: 126; Significance: 6e-65; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 41 - 166
Target Start/End: Original strand, 29608645 - 29608770
Alignment:
Q  41 tcacgaaattgcaatgagaaatcataaattgattcgttcagaattaatgttcttttgtaaattgcaaacaaaactttactttatttttcattgttatgca 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29608645 tcacgaaattgcaatgagaaatcataaattgattcgttcagaattaatgttcttttgtaaattgcaaacaaaactttactttatttttcattgttatgca 29608744  T
Q  141 ttataaacaatagttagtgtatctct 166  Q
    ||||||||||||||||||||||||||    
T  29608745 ttataaacaatagttagtgtatctct 29608770  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 34108906 - 34108977
Alignment:
Q  93 ttttgtaaattgcaaacaaaactttactttatttttcattgttatgc---attataaacaatagttagtgta 161  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| ||||    
T  34108906 ttttgtcaattgcaaacaaaactttactttatttttcattgttatgcattattataaacaatagttattgta 34108977  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 32323453 - 32323401
Alignment:
Q  90 ttcttttgtaaattgcaaacaaaactttactttatttttcattgttatgcatt 142  Q
    ||||| |||||||||||||||||| || |||| ||||||||||||||||||||    
T  32323453 ttcttatgtaaattgcaaacaaaatttcacttaatttttcattgttatgcatt 32323401  T

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Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 41 - 155
Target Start/End: Original strand, 25032758 - 25032874
Alignment:
Q  41 tcacgaaattgcaatgagaaatcataaattgat--tcgttcagaattaatgttcttttgtaaattgcaaacaaaactttactttatttttcattgttatg 138  Q
    ||||||||||||||  || ||||||||| ||||  ||||| || ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  25032758 tcacgaaattgcaacaaggaatcataaactgatattcgttaaggattaatgttcttttgcaaattgcaaacaaaagtttactttatttttcattgttatg 25032857  T
Q  139 cattataaacaatagtt 155  Q
    ||||| ||| |||||||    
T  25032858 cattaaaaataatagtt 25032874  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 3404108 - 3404046
Alignment:
Q  95 ttgtaaattgcaaacaaaactttactttatttttcattgttatgcattataaacaatagttag 157  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  3404108 ttgtaaattgcaaacaaaattttactttatttttcattgttatgcattataaataatagttag 3404046  T

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Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 72 - 159
Target Start/End: Complemental strand, 36690357 - 36690270
Alignment:
Q  72 attcgttcagaattaatgttcttttgtaaattgcaaacaaaactttactttatttttcattgttatgcattataaacaatagttagtg 159  Q
    ||||||| |||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||| |||||||||||    
T  36690357 attcgttaagaattgatgttcttttgtaaatttcaaacaaaactttactttatttctcattgttatgcattaaaaataatagttagtg 36690270  T

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Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 41 - 128
Target Start/End: Complemental strand, 36409845 - 36409756
Alignment:
Q  41 tcacgaaattgcaatgagaaatcataaattgatt--cgttcagaattaatgttcttttgtaaattgcaaacaaaactttactttattttt 128  Q
    ||||||||||||||  || |||||||||||||||  |||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  36409845 tcacgaaattgcaacaaggaatcataaattgattttcgttaaggattaatgttcttttgtaaattgcaaacaaaactttactttattttt 36409756  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 82 - 147
Target Start/End: Complemental strand, 10912209 - 10912144
Alignment:
Q  82 aattaatgttcttttgtaaattgcaaacaaaactttactttatttttcattgttatgcattataaa 147  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  10912209 aattaatattcttttgtaaattgcaaacaaaactttactttatttttcattgttatccattctaaa 10912144  T

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Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 25815340 - 25815254
Alignment:
Q  72 attcgttcagaattaatgttcttttgtaaattgcaaacaaaactttactttatttttcattgttatgcattataaacaatagttagt 158  Q
    ||||||| || ||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| || ||| |||| |||||    
T  25815340 attcgttaaggattaatgttcttttgtaaagtgcaaacaaaattttactttattttttattgttatgcaataaaaataataattagt 25815254  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 11857443 - 11857367
Alignment:
Q  83 attaatgttcttttgtaaattgcaaacaaaactttactttatttttcattgttatgcattataaacaatagttagtg 159  Q
    |||||| || |||||||||||||||||||||| |||||||||||| |||||||||||| | |||| |||||||||||    
T  11857443 attaatatttttttgtaaattgcaaacaaaacgttactttattttccattgttatgcaatttaaataatagttagtg 11857367  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 21178408 - 21178344
Alignment:
Q  97 gtaaattgcaaacaaaactttactttatttttcattgttatgcattataaacaatagttagtgta 161  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||  ||| ||||||| |||||    
T  21178408 gtaaattgcaaacaaaattttactttagttttcattgttatgcattccaaataatagttggtgta 21178344  T

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Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 83 - 161
Target Start/End: Complemental strand, 11500589 - 11500512
Alignment:
Q  83 attaatgttcttttgtaaattgcaaacaaaactttactttatttttcattgttatgcattataaacaatagttagtgta 161  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  11500589 attaatgttgttttgtaaattgcaa-caaaactttactttatttttcattgttatgcattataaataatagctagtgta 11500512  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 45 - 161
Target Start/End: Original strand, 36644710 - 36644831
Alignment:
Q  45 gaaattgcaatgagaaatcataaattgat--tcgttcagaattaatgttcttttgtaaattgcaaacaaaactttactttatttttcattgt----tatg 138  Q
    ||||||||||| || ||||||||||||||  || || || |||||||| |||| || ||||||||||||||||||| |||||||||||||||    ||||    
T  36644710 gaaattgcaataaggaatcataaattgatattcattaaggattaatgtccttt-gtcaattgcaaacaaaactttaatttatttttcattgttatatatg 36644808  T
Q  139 cattataaacaatagttagtgta 161  Q
    |||| ||||||||||||| ||||    
T  36644809 cattctaaacaatagttaatgta 36644831  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 83 - 158
Target Start/End: Original strand, 22516801 - 22516876
Alignment:
Q  83 attaatgttcttttgtaaattgcaaacaaaactttactttatttttcattgttatgcattataaacaatagttagt 158  Q
    |||||| || |||||  |||||||||||||| |||||||||||||||||| ||||||||| |||| ||||||||||    
T  22516801 attaatatttttttgataattgcaaacaaaaatttactttatttttcatttttatgcattctaaataatagttagt 22516876  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 2758373 - 2758297
Alignment:
Q  59 aaatcataaattgat--tcgttcagaattaatgttcttttgtaaattgcaaacaaaactttactttatttttcattg 133  Q
    |||||||||||||||  | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2758373 aaatcataaattgatatttgttaagaattaatgttcttttgtaaattgcaaacaaaactttactttatttttcattg 2758297  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 83 - 141
Target Start/End: Complemental strand, 28111588 - 28111530
Alignment:
Q  83 attaatgttcttttgtaaattgcaaacaaaactttactttatttttcattgttatgcat 141  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28111588 attaatattcttttgtaaattgcaaacaaaactttactttatttttcattgttatgcat 28111530  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 84 - 138
Target Start/End: Complemental strand, 16948979 - 16948925
Alignment:
Q  84 ttaatgttcttttgtaaattgcaaacaaaactttactttatttttcattgttatg 138  Q
    |||| |||||||||||||||| ||||||||| |||||| ||||||||||||||||    
T  16948979 ttaaagttcttttgtaaattggaaacaaaacattacttaatttttcattgttatg 16948925  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 16904733 - 16904783
Alignment:
Q  90 ttcttttgtaaattgcaaacaaaactttactttatttttcattgttatgca 140  Q
    ||||||||||| ||| |||||||||| |||||||||||||||| |||||||    
T  16904733 ttcttttgtaatttggaaacaaaactctactttatttttcattattatgca 16904783  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 161
Target Start/End: Original strand, 15545152 - 15545237
Alignment:
Q  76 gttcagaattaatgttcttttgtaaattgcaaacaaaactttactttatttttcattgttatgcattataaacaatagttagtgta 161  Q
    |||||| |||||| ||||||||||| || |||||||||||||||||||||||||||| | ||||||| |||| ||||||| |||||    
T  15545152 gttcaggattaatattcttttgtaagtttcaaacaaaactttactttatttttcattttaatgcattctaaataatagttggtgta 15545237  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 128
Target Start/End: Original strand, 11197471 - 11197510
Alignment:
Q  89 gttcttttgtaaattgcaaacaaaactttactttattttt 128  Q
    |||||||||||||||||||||||||| ||||||| |||||    
T  11197471 gttcttttgtaaattgcaaacaaaaccttactttcttttt 11197510  T

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