View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17277_low_9 (Length: 653)

Name: NF17277_low_9
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17277_low_9
NF17277_low_9
[»] chr6 (8 HSPs)
chr6 (232-461)||(363228-363457)
chr6 (18-240)||(362650-362869)
chr6 (533-643)||(363531-363641)
chr6 (200-362)||(377682-377844)
chr6 (201-373)||(355306-355478)
chr6 (201-360)||(346660-346819)
chr6 (536-593)||(20006675-20006732)
chr6 (558-590)||(34559540-34559572)
[»] chr3 (7 HSPs)
chr3 (533-603)||(47683908-47683978)
chr3 (608-646)||(27639316-27639354)
chr3 (547-593)||(32187146-32187192)
chr3 (533-592)||(43460506-43460565)
chr3 (608-637)||(4699078-4699107)
chr3 (533-593)||(30633707-30633767)
chr3 (533-593)||(50279980-50280040)
[»] chr4 (4 HSPs)
chr4 (533-602)||(34259944-34260013)
chr4 (560-593)||(29949707-29949740)
chr4 (533-593)||(18634819-18634879)
chr4 (533-593)||(3223107-3223167)
[»] chr8 (4 HSPs)
chr8 (533-593)||(33511719-33511779)
chr8 (533-593)||(20284825-20284885)
chr8 (533-593)||(21071454-21071514)
chr8 (534-593)||(102349-102408)
[»] chr2 (4 HSPs)
chr2 (536-592)||(32755799-32755855)
chr2 (547-593)||(28508484-28508530)
chr2 (536-593)||(38689030-38689087)
chr2 (560-593)||(39454272-39454305)
[»] chr1 (2 HSPs)
chr1 (534-593)||(40605314-40605373)
chr1 (533-593)||(38627337-38627397)
[»] chr7 (1 HSPs)
chr7 (416-453)||(41227067-41227104)
[»] chr5 (3 HSPs)
chr5 (552-593)||(27546557-27546598)
chr5 (533-593)||(12827859-12827919)
chr5 (561-593)||(36548414-36548446)


Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 232 - 461
Target Start/End: Original strand, 363228 - 363457
Alignment:
Q  232 aaattaaaatgatagcaattgcaattttgtgcaactttcctgtcctatcggtggaaggtcaagctcctactttaatccattcaattgtacttctaatgaa 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  363228 aaattaaaatgatagcaattgcaattttgtgcaactttcctgtcctatcggtggaaggtcaagctcctactttaatccattcaattgtacttctaatgaa 363327  T
Q  332 aaatggtttgaaggttaggatcacaaaaagagaaaattgatgaaagagattagttatacctgtagaaaccattattaattcttcgagaaatgaaatatat 431  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  363328 aaatggtttgaaggttaggatcacaaaaagagaaaattgatggaagagattagttatacctatagaaaccattattaattcttcgagaaataaaatatat 363427  T
Q  432 acaattattttgtgacaactttcgaacaac 461  Q
    ||||||||||||| | || |||||||||||    
T  363428 acaattattttgttataattttcgaacaac 363457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 362650 - 362869
Alignment:
Q  18 gcaaataaacctctaattaatataccacgtgggagcaggtactattatgtgatatttggtttataaatatatatgtcgtacctgttggatgattatgcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  362650 gcaaataaacctctaattaatataccacgtgggagcaggtactattatgtgatatttggtttataaatatatatgtcgtacctgttggatgattatgcta 362749  T
Q  118 aattgtgagaaatatattactattaaatgaatattacatagtttttgattttatacaagtgttgttgtagtatagagcataagacttgcttgggaaagga 217  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||   ||||||||||||||||||| ||||||| ||||||||||    
T  362750 aatagtgagaaatatattactattaaatgaatattacatagtttttgattttctacaag---tgttgtagtatagagcataggacttgcatgggaaagga 362846  T
Q  218 cttgtccttcattaaaattaaaa 240  Q
    ||||| |||||||||||||||||    
T  362847 cttgtacttcattaaaattaaaa 362869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 533 - 643
Target Start/End: Original strand, 363531 - 363641
Alignment:
Q  533 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaa-tggttatacaaatatcatcaccctaattatttcgagttaagatcatctccatttat 631  Q
    ||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  363531 aagaagagagaaaaagaaa-ttgtcttaaaagttttcacaaaaatggttatacaaatatcatcaccctaattatttcgagttaaaatcctctccatttat 363629  T
Q  632 tagtctcttcat 643  Q
    ||||||||||||    
T  363630 tagtctcttcat 363641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 200 - 362
Target Start/End: Original strand, 377682 - 377844
Alignment:
Q  200 gacttgcttgggaaaggacttgtccttcattaaaattaaaatgatagcaattgcaattttgtgcaactttcctgtcctatcggtggaaggtcaagctcct 299  Q
    |||||| |||||||||||||||||||||||| || ||||||||||||||||||| |||||| |||| | |  ||| | |   ||||| ||||| | ||||    
T  377682 gacttgtttgggaaaggacttgtccttcattcaagttaaaatgatagcaattgctattttgagcaaatattgtgttcaagtagtggatggtcatgttcct 377781  T
Q  300 actttaatccattcaattgtacttctaatgaaaaatggtttgaaggttaggatcacaaaaaga 362  Q
    |  ||||  ||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  377782 atattaagtcattcaattgtacttctaatgaagaatggtttgaaggttaggataacaaaaaga 377844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 201 - 373
Target Start/End: Complemental strand, 355478 - 355306
Alignment:
Q  201 acttgcttgggaaaggacttgtccttcattaaaattaaaatgatagcaattgcaattttgtgcaactttcctgtcctatcggtggaaggtcaagctccta 300  Q
    ||||| |||||||||||||||||||||||| ||||||| |||| | ||||||| |||||| |||| | |  ||||| |   || || ||||| | |||||    
T  355478 acttgtttgggaaaggacttgtccttcattcaaattaagatgacaacaattgctattttgagcaaatattgtgtccaagtagttgatggtcatgttccta 355379  T
Q  301 ctttaatccattcaattgtacttctaatgaaaaatggtttgaaggttaggatcacaaaaagagaaaattgatg 373  Q
      |||| |||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||| ||||||    
T  355378 tcttaagccattcaattgtacttcttatgaagaatggtttgaaggttaggataacaaaaagagaaatttgatg 355306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 201 - 360
Target Start/End: Complemental strand, 346819 - 346660
Alignment:
Q  201 acttgcttgggaaaggacttgtccttcattaaaattaaaatgatagcaattgcaattttgtgcaactttcctgtcctatcggtggaaggtcaagctccta 300  Q
    ||||| |||||||||||||||||||||||| ||||||| |||| | ||||||| |||||| |||| | |  ||||| |   || || ||||| | |||||    
T  346819 acttgtttgggaaaggacttgtccttcattcaaattaagatgacaacaattgctattttgagcaaatattgtgtccaagtagttgatggtcatgttccta 346720  T
Q  301 ctttaatccattcaattgtacttctaatgaaaaatggtttgaaggttaggatcacaaaaa 360  Q
      |||| ||||||||||||| || | ||||| |||||||||||||||| ||| |||||||    
T  346719 tcttaagccattcaattgtaattgttatgaagaatggtttgaaggttaagataacaaaaa 346660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 536 - 593
Target Start/End: Complemental strand, 20006732 - 20006675
Alignment:
Q  536 aagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 593  Q
    ||||||||||||||||||||||  ||||||| |||| |||| || |||||||||||||    
T  20006732 aagagagaaaaagaaggttgtcacaaaagttatcaccaaatagtgatacaaatatcat 20006675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 590
Target Start/End: Complemental strand, 34559572 - 34559540
Alignment:
Q  558 ttaaaagttttcacaaaatggttatacaaatat 590  Q
    ||||||||| |||||||||||||||||||||||    
T  34559572 ttaaaagttatcacaaaatggttatacaaatat 34559540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 533 - 603
Target Start/End: Original strand, 47683908 - 47683978
Alignment:
Q  533 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcatcaccctaatt 603  Q
    ||||||||||||| |||||||||||| ||||||| ||||||||||||| |||||||||||| || ||||||    
T  47683908 aagaagagagaaagagaaggttgtctcaaaagttgtcacaaaatggttgtacaaatatcattactctaatt 47683978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 608 - 646
Target Start/End: Original strand, 27639316 - 27639354
Alignment:
Q  608 cgagttaagatcatctccatttattagtctcttcatctc 646  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  27639316 cgagttaagatcatctacatttattagtctcttcatctc 27639354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 547 - 593
Target Start/End: Complemental strand, 32187192 - 32187146
Alignment:
Q  547 agaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 593  Q
    ||||||||||| |||||||| ||||||||||||| ||||||||||||    
T  32187192 agaaggttgtcataaaagttgtcacaaaatggttgtacaaatatcat 32187146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 533 - 592
Target Start/End: Original strand, 43460506 - 43460565
Alignment:
Q  533 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatca 592  Q
    |||||||||||||| ||||| ||||  ||||||| |||||||| |||| |||||||||||    
T  43460506 aagaagagagaaaatgaaggctgtcccaaaagttgtcacaaaaaggttgtacaaatatca 43460565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 608 - 637
Target Start/End: Complemental strand, 4699107 - 4699078
Alignment:
Q  608 cgagttaagatcatctccatttattagtct 637  Q
    ||||||||||||||||||||||||||||||    
T  4699107 cgagttaagatcatctccatttattagtct 4699078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 593
Target Start/End: Complemental strand, 30633767 - 30633707
Alignment:
Q  533 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 593  Q
    ||||||||||||||| ||||||||| | |||||| ||| ||||| | | ||||||||||||    
T  30633767 aagaagagagaaaaataaggttgtcattaaagttatcataaaatagatgtacaaatatcat 30633707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 593
Target Start/End: Complemental strand, 50280040 - 50279980
Alignment:
Q  533 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 593  Q
    ||||||||||||||| ||||||||| | |||||| |||  |||||| | ||||||||||||    
T  50280040 aagaagagagaaaaacaaggttgtcattaaagttgtcatgaaatggatgtacaaatatcat 50279980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 533 - 602
Target Start/End: Original strand, 34259944 - 34260013
Alignment:
Q  533 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcatcaccctaat 602  Q
    ||||||||||||||||||| |||||  ||||||| |||| |||||||| |||||||||||| || |||||    
T  34259944 aagaagagagaaaaagaagtttgtcacaaaagttgtcaccaaatggttgtacaaatatcattactctaat 34260013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 560 - 593
Target Start/End: Original strand, 29949707 - 29949740
Alignment:
Q  560 aaaagttttcacaaaatggttatacaaatatcat 593  Q
    ||||||||||||||||||||||||||||||||||    
T  29949707 aaaagttttcacaaaatggttatacaaatatcat 29949740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 533 - 593
Target Start/End: Original strand, 18634819 - 18634879
Alignment:
Q  533 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 593  Q
    ||||||||||||||| ||||||||||||||| || |  |||||||||| || |||||||||    
T  18634819 aagaagagagaaaaataaggttgtcttaaaaattgtttcaaaatggttgtataaatatcat 18634879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 593
Target Start/End: Original strand, 3223107 - 3223167
Alignment:
Q  533 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 593  Q
    |||||||||||||||||||||||||   ||||||||||   ||||| | ||||||||||||    
T  3223107 aagaagagagaaaaagaaggttgtcactaaagttttcatggaatggatgtacaaatatcat 3223167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 533 - 593
Target Start/End: Original strand, 33511719 - 33511779
Alignment:
Q  533 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 593  Q
    |||||||||||| ||||| ||||||  ||||||||||||||||| ||| ||||||||||||    
T  33511719 aagaagagagaagaagaatgttgtcccaaaagttttcacaaaatagttgtacaaatatcat 33511779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 533 - 593
Target Start/End: Original strand, 20284825 - 20284885
Alignment:
Q  533 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 593  Q
    |||||||||||||||||||||||||  ||||||| |||  |||||||| | ||||||||||    
T  20284825 aagaagagagaaaaagaaggttgtcacaaaagttgtcatcaaatggttgttcaaatatcat 20284885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 533 - 593
Target Start/End: Original strand, 21071454 - 21071514
Alignment:
Q  533 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 593  Q
    |||||||||||||||||||||||||  ||||||| |||  |||||||| | ||||||||||    
T  21071454 aagaagagagaaaaagaaggttgtcacaaaagttgtcatcaaatggttgttcaaatatcat 21071514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 534 - 593
Target Start/End: Complemental strand, 102408 - 102349
Alignment:
Q  534 agaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 593  Q
    ||||| ||| |||||||||||| | |||||||| | ||||||||||| ||||||||||||    
T  102408 agaagcgaggaaaagaaggttggcctaaaagttgtaacaaaatggttgtacaaatatcat 102349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 536 - 592
Target Start/End: Original strand, 32755799 - 32755855
Alignment:
Q  536 aagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatca 592  Q
    |||||||||||| |||| ||||| ||||||| ||||||||||||| || ||||||||    
T  32755799 aagagagaaaaataaggctgtctcaaaagttgtcacaaaatggttgtagaaatatca 32755855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 547 - 593
Target Start/End: Complemental strand, 28508530 - 28508484
Alignment:
Q  547 agaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 593  Q
    |||||||||||  ||||||| ||||||||||||| ||||||||||||    
T  28508530 agaaggttgtcccaaaagttgtcacaaaatggttgtacaaatatcat 28508484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 593
Target Start/End: Original strand, 38689030 - 38689087
Alignment:
Q  536 aagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 593  Q
    |||||||| |||||||||||||  |||| ||||||| |||||||| | ||||||||||    
T  38689030 aagagagagaaagaaggttgtcccaaaaattttcactaaatggttgttcaaatatcat 38689087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 560 - 593
Target Start/End: Original strand, 39454272 - 39454305
Alignment:
Q  560 aaaagttttcacaaaatggttatacaaatatcat 593  Q
    ||||||| ||||||||||||||||||||||||||    
T  39454272 aaaagttgtcacaaaatggttatacaaatatcat 39454305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 534 - 593
Target Start/End: Complemental strand, 40605373 - 40605314
Alignment:
Q  534 agaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 593  Q
    |||||||||||||||||||||||| |||||||| | |  |||||||| | ||||||||||    
T  40605373 agaagagagaaaaagaaggttgtcataaaagttgttagcaaatggttgttcaaatatcat 40605314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 593
Target Start/End: Complemental strand, 38627397 - 38627337
Alignment:
Q  533 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 593  Q
    |||||||| |||||| ||  |||||||||||||| ||||||||| | | ||||||||||||    
T  38627397 aagaagagggaaaaataatattgtcttaaaagttatcacaaaatagatgtacaaatatcat 38627337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 453
Target Start/End: Original strand, 41227067 - 41227104
Alignment:
Q  416 gagaaatgaaatatatacaattattttgtgacaacttt 453  Q
    ||||||||| || |||||||||||||||||||||||||    
T  41227067 gagaaatgatatttatacaattattttgtgacaacttt 41227104  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 552 - 593
Target Start/End: Original strand, 27546557 - 27546598
Alignment:
Q  552 gttgtcttaaaagttttcacaaaatggttatacaaatatcat 593  Q
    ||||||||||||||| |  |||||||||||||||||||||||    
T  27546557 gttgtcttaaaagttgttgcaaaatggttatacaaatatcat 27546598  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 593
Target Start/End: Complemental strand, 12827919 - 12827859
Alignment:
Q  533 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 593  Q
    ||||||||||| ||||||||||||| |||||||  | |  |||||||||| ||||||||||    
T  12827919 aagaagagagagaaagaaggttgtcataaaagtcattagtaaatggttattcaaatatcat 12827859  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 593
Target Start/End: Original strand, 36548414 - 36548446
Alignment:
Q  561 aaagttttcacaaaatggttatacaaatatcat 593  Q
    |||||| ||||||||||||||||||||||||||    
T  36548414 aaagttgtcacaaaatggttatacaaatatcat 36548446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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