View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_90 (Length: 324)
Name: NF17277_low_90
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_90 |
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| [»] scaffold0700 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 46201368 - 46201055
Alignment:
| Q |
1 |
tcttccaacggcaacctatgatacgacggattattaaacgaagaagctatcacaaacaccgtccctgcagctatcaaatttccagcaacaattcctccaa |
100 |
Q |
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| T |
46201368 |
tcttccaacggcaacctatgatacgacggattattaaacgaagaagcaatcacaaacaccgtccctgcagctatcaaatttccagcaacaattcctccaa |
46201269 |
T |
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| Q |
101 |
caatctgtccttgaggtccagcaagagagatcgagaagttactcggaatcgccggagaaacaccgtgttgttgaggaacaaaagtggcagttatagaaag |
200 |
Q |
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| T |
46201268 |
caatctgtccttgaggtccagcaagagagatcgagaagttactcggaatcgccggagaaacaccgtgttgttgaggaacaaaagtggcagttatagaaag |
46201169 |
T |
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| Q |
201 |
aatatcaaaacggccgtgaaaagtaacggtggttcctggtgtagttgaaggttgacgaagagtaacattagcaacagttcctgaaccagttaaaacacat |
300 |
Q |
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| T |
46201168 |
aatatcaaaacggccgtgaaaagtaacggtggttcctggtgtagttgaaggttgacgaagagtaacattagcaacagttcctgaaccagttaaaacacat |
46201069 |
T |
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| Q |
301 |
aaaccaatattctt |
314 |
Q |
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| T |
46201068 |
aaaccaatattctt |
46201055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0700 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: scaffold0700
Description:
Target: scaffold0700; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 40 - 315
Target Start/End: Complemental strand, 5854 - 5579
Alignment:
| Q |
40 |
gaagaagctatcacaaacaccgtccctgcagctatcaaatttccagcaacaattcctccaacaatctgtccttgaggtccagcaagagagatcgagaagt |
139 |
Q |
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| T |
5854 |
gaagaagctataacaaacattgtcaccgcatctatccaatttccagcaacaattcctccaacaatctgtccttgaggtccagcaagcaagatctagaagt |
5755 |
T |
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| Q |
140 |
tactcggaatcgccggagaaacaccgtgttgttgaggaacaaaagtggcagttatagaaagaatatcaaaacggccgtgaaaagtaacggtggttcctgg |
239 |
Q |
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| T |
5754 |
ttctcggaatcacgggagaaacaccgggttgttgaggaataaaagtagcagttatagaaagaatatcaaaacggctgtgaaaagtaattgtggttccggg |
5655 |
T |
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| Q |
240 |
tgtagttgaaggttgacgaagagtaacattagcaacagttcctgaaccagttaaaacacataaaccaatattcttc |
315 |
Q |
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| T |
5654 |
tgtagttgaaggttgacgaagagtaacattagcaacagttcctgaaccagttaaaacacataaaccaatattcttc |
5579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 305
Target Start/End: Original strand, 27816164 - 27816261
Alignment:
| Q |
208 |
aaacggccgtgaaaagtaacggtggttcctggtgtagttgaaggttgacgaagagtaacattagcaacagttcctgaaccagttaaaacacataaacc |
305 |
Q |
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| T |
27816164 |
aaacgaccgtgaaaagtaacggtggtgccaggaggaccagaaggttgacggagtgtaacgttagctacagtgcctgaaccggttaatacacataaacc |
27816261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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