View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_95 (Length: 314)
Name: NF17277_low_95
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_95 |
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| [»] scaffold0536 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 15 - 297
Target Start/End: Original strand, 48951803 - 48952085
Alignment:
| Q |
15 |
gagcagaggatccataaaagacttggactccaagggtggtgttgaattaatgacaatgtcgtaaggaaaattcggaataacaaaagaaccagaagcatcc |
114 |
Q |
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| T |
48951803 |
gagcagaggatccataaaagacttggactccaagggtggtgttgaattaatgacaatatcgtaaggaaaattcggaataacaaaagaaccagaagcatcc |
48951902 |
T |
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| Q |
115 |
tcagggagagggtgtgatttgagggattccatggcacatatggtaaagagtgagaaaccattgaacacgaatctcggaatgtgaagcttctttgctagct |
214 |
Q |
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| T |
48951903 |
tcagggagagggtgcaatttgagggattccatggcacatatggtaaagagtgagaaaccgttgaacacgaatctcggaatgtgcagcttctttgctagct |
48952002 |
T |
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| Q |
215 |
catccgcccacgggaataaaaaatccgccatgatacaatcaggtgggtgctgctccacgaaattctcaattagtccatggagc |
297 |
Q |
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| T |
48952003 |
catcagcccacgggaataaaaaatccgccacgatgcaatcaggtgggtgctgctccacgaaattctcaattagtccgtggagc |
48952085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 136 - 225
Target Start/End: Original strand, 48974784 - 48974873
Alignment:
| Q |
136 |
agggattccatggcacatatggtaaagagtgagaaaccattgaacacgaatctcggaatgtgaagcttctttgctagctcatccgcccac |
225 |
Q |
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| T |
48974784 |
agggattccatggcacatatggcaaagagtgagaaaccgttgaaggcgagtctgggaatgtgaagtctgtttgccaactcatccacccac |
48974873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 49 - 284
Target Start/End: Complemental strand, 1038 - 803
Alignment:
| Q |
49 |
ggtggtgttgaattaatgacaatgtcgtaaggaaaattcggaataacaaaagaaccagaagcatcctcagggagagggtgtgatttgagggattccatgg |
148 |
Q |
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| T |
1038 |
ggtggttttgaattaatgatgatatcgtaaggaaaattcggaataacaaaagaaccagaagcatcctcagggagaggttgtgatttaagggattccatgg |
939 |
T |
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| Q |
149 |
cacatatggtaaagagtgagaaaccattgaacacgaatctcggaatgtgaagcttctttgctagctcatccgcccacgggaataaaaaatccgccatgat |
248 |
Q |
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| T |
938 |
cacatatggtaaatagtgagaaaccgttgaaggcaaatctcggaatgtgaagcttgtttgccagctcatccacccaagggaataaaaaatccgctacgat |
839 |
T |
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| Q |
249 |
acaatcaggtgggtgctgctccacgaaattctcaat |
284 |
Q |
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| T |
838 |
gcaatcaggtggttcctgttccacgaaattctcaat |
803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 139 - 275
Target Start/End: Complemental strand, 9984 - 9848
Alignment:
| Q |
139 |
gattccatggcacatatggtaaagagtgagaaaccattgaacacgaatctcggaatgtgaagcttctttgctagctcatccgcccacgggaataaaaaat |
238 |
Q |
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| T |
9984 |
gattccatggcacaaatagcaaacagagagaaaccgttgaaagagagtcttggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaaaaaat |
9885 |
T |
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| Q |
239 |
ccgccatgatacaatcaggtgggtgctgctccacgaa |
275 |
Q |
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| T |
9884 |
ctgtcacgatgcaatccggtgggtgctgctccacgaa |
9848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 275
Target Start/End: Complemental strand, 6000 - 5864
Alignment:
| Q |
139 |
gattccatggcacatatggtaaagagtgagaaaccattgaacacgaatctcggaatgtgaagcttctttgctagctcatccgcccacgggaataaaaaat |
238 |
Q |
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| T |
6000 |
gattctatggcacaaattgcaaacagagagaaaccgttgaaactgagtctaggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaagaaat |
5901 |
T |
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| Q |
239 |
ccgccatgatacaatcaggtgggtgctgctccacgaa |
275 |
Q |
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| T |
5900 |
ccgccacaatgcaatccggtgggtgctgctccacgaa |
5864 |
T |
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