View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_96 (Length: 314)
Name: NF17277_low_96
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_96 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 16 - 303
Target Start/End: Complemental strand, 40767188 - 40766901
Alignment:
| Q |
16 |
taaaataccgtgacattttatccaccaagcattgagataaaaagatgtttaatatcttaaaaatctttcatgtgttgttctgtcttctactgttacgtga |
115 |
Q |
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| T |
40767188 |
taaaataccgtgacattttatccaccaagcattgagacaaaaagatgtttaataccttaaaaatctttcatgtgttgttctgtcttctactgttacgtga |
40767089 |
T |
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| Q |
116 |
ttactaactttttaccatatcaaacacgctcttagatagactaaagtttgtaggaagatacatgatttgagggttacaatcttgtaatcttatttgagat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40767088 |
ttactaactttttaccatatcaaacacgctcttagatagactaaagtttgtaggaagatacatgatttgagggttacaatcttgtaatcttatttgagat |
40766989 |
T |
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| Q |
216 |
aatgaaacattcaatatgtgttttttcagtgacaagagatgctaaactggtaaatttttgtgctagctattgtcttctctatagtata |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40766988 |
aatgaaacattcaatatgtgttttttcagtgacaagagatgctaaactggtaaatttttgtgctagctattgtcttctctatagtata |
40766901 |
T |
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