View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_98 (Length: 312)
Name: NF17277_low_98
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_98 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 25955432 - 25955138
Alignment:
| Q |
1 |
aatggttatcaagagaaactgtaagcttttccaagcgcaaaaatctcgagctaacaagtgtagttataggtgttattttttcaattaagcaaaataatat |
100 |
Q |
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| T |
25955432 |
aatggttatcaagagaaactgtaagcttttccaagcgcaaaaatctcgagctaacaagtgtagttataggtgttattttttcaattaagcaaaataatat |
25955333 |
T |
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| Q |
101 |
gaaaaatcaaatgtctggtgtggttgatgttcaagcgaaggttctcaaacttggagaagaaatttttagtacaagtctatacataggcggagtgccaagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25955332 |
gaaaaatcaaatgtctggtgtggttgatgttcaagcgaaggttctcaaacttggagaagaaatttttagtacaagtctatacataggcggagtgccaagg |
25955233 |
T |
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| Q |
201 |
acagatgatcaacatatatacttgcgaaggtgcaataattaccatccattggtatccgctttaaaagattctgatacagtttgcgtggcaaagag |
295 |
Q |
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| T |
25955232 |
acagatgatcaacatatatacttgcgaaggtgcaataattaccatccattggtatccgctttaaaagattctgatacagtttgtgtggcaaagag |
25955138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 25946350 - 25946263
Alignment:
| Q |
1 |
aatggttatcaagagaaactgtaagcttttccaagcgcaaaaatctcgagctaacaagtgtagttataggtgttattttttcaattaa |
88 |
Q |
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||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| || |||||||||| |
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| T |
25946350 |
aatggttttcaggagaaactgtaagcttttccaatcgcaaaaatctcgagctaacaagtgtagttgtaggtgttgttgtttcaattaa |
25946263 |
T |
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