View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17278_high_2 (Length: 479)
Name: NF17278_high_2
Description: NF17278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17278_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 33302956 - 33303273
Alignment:
| Q |
1 |
aagacaaggaagagaagaagaagaaatctggaaaggataagaccaatgatcctaataagctgaaacagaagcttgaaaaagtgaatgcaaagttagaagc |
100 |
Q |
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| T |
33302956 |
aagacaaggaagagaagaagaagaaatctggaaaggataagaccaatgatcctagtaagctgaaacagaagcttgaaaaagtgaatgcaaagttagaagc |
33303055 |
T |
|
| Q |
101 |
actcttggaaaagaaggctgatctagaaaggcagatta---aaggtgaagatggaggtcaagatattaacgtgaaggacaagtaagagatatatagcaca |
197 |
Q |
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| T |
33303056 |
actcttggaaaagaaggctgatctagaaaggcagattaaagaaggtgaagatggaggtcaagatattaacgtgaaggacaagtaagagatatatagcaca |
33303155 |
T |
|
| Q |
198 |
gcagttcagaataccatggatgatcatttactgtaatcatataatataat--tgcttaattttgttttgtataataaaagctgttttcttaattttgagt |
295 |
Q |
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| T |
33303156 |
acagttcagaataccatggatgatcatttactgtaatcatataatataataatgcttaattttgttttgtataat-aaagctgttttcttaattttgagt |
33303254 |
T |
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| Q |
296 |
gaaaaatgatgcatttgtg |
314 |
Q |
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||||||||||||||||||| |
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| T |
33303255 |
gaaaaatgatgcatttgtg |
33303273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 352 - 462
Target Start/End: Original strand, 33303300 - 33303409
Alignment:
| Q |
352 |
tctatttccatcttgtctagtattactcttcnnnnnnnatttagaaatcaggaccagattctagaactccgacgtcaatcttactaatgtcataggtgtt |
451 |
Q |
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|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
33303300 |
tctatttccatcttgtctagtatttctcttctttttt-atttagaaatcaggaccagattctagaactccgacgtcaatcttactaatgtcatcgttgtt |
33303398 |
T |
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| Q |
452 |
actgttactca |
462 |
Q |
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| T |
33303399 |
actgttactca |
33303409 |
T |
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