View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17278_high_9 (Length: 237)
Name: NF17278_high_9
Description: NF17278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17278_high_9 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 5939732 - 5939505
Alignment:
| Q |
10 |
gtattatctagttcttacctcttataaaccaaatagaacacaataattgacattggacatggcataaactaagaaattccattctctctacgtcaaattt |
109 |
Q |
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| T |
5939732 |
gtataatctagttcttacctcttataaaccaaatagaacacaataattgacattggatatagcataaactaagaaattccattctctctacgtcaaattt |
5939633 |
T |
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| Q |
110 |
aataaatctacgtcaaatttatcattaagagttacaaaaaattgtaatagaaggcaataccaaaaagacaattgcagaattataacatatccatgcaaac |
209 |
Q |
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| T |
5939632 |
aataaatctacgtcaaatttatcattaagagttacatataattgtaatagaaggcaataccaaaaagacaattacagaattataacatatccatgcaaac |
5939533 |
T |
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| Q |
210 |
tagttgtcagaaaatttggtcatagcaa |
237 |
Q |
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| T |
5939532 |
tagtagtctgaaaatttggtcatagcaa |
5939505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 5973620 - 5973523
Alignment:
| Q |
20 |
gttcttacctcttataaaccaaatagaacacaataattgacattggacatggcataaactaagaaattccattctctctacgtcaaatttaataaatc |
117 |
Q |
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| T |
5973620 |
gttcttacctctaataaacctaatagaatacaataattgacattggacatggcttaaactaagaaattccattccctctacgtcaaatttagtaaatc |
5973523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 5911055 - 5910997
Alignment:
| Q |
59 |
acattggacatggcataaactaagaaattccattctctctacgtcaaatttaataaatc |
117 |
Q |
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| T |
5911055 |
acattggacatggcttaaacaaagaaattccattctctccacttcaaacttagtaaatc |
5910997 |
T |
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