View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17278_low_1 (Length: 529)

Name: NF17278_low_1
Description: NF17278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17278_low_1
NF17278_low_1
[»] chr6 (7 HSPs)
chr6 (14-237)||(15278887-15279112)
chr6 (312-520)||(15278609-15278817)
chr6 (391-491)||(34517009-34517110)
chr6 (397-491)||(34513947-34514042)
chr6 (391-491)||(3510555-3510653)
chr6 (391-489)||(8910839-8910937)
chr6 (313-346)||(34513863-34513896)
[»] chr2 (3 HSPs)
chr2 (312-520)||(2039769-2039979)
chr2 (395-520)||(29962255-29962381)
chr2 (406-452)||(2584334-2584381)
[»] chr8 (4 HSPs)
chr8 (313-520)||(6820263-6820470)
chr8 (391-520)||(44669649-44669779)
chr8 (312-491)||(3896387-3896567)
chr8 (397-484)||(5536284-5536372)
[»] scaffold0172 (1 HSPs)
scaffold0172 (312-520)||(33738-33947)
[»] chr3 (3 HSPs)
chr3 (312-516)||(1312209-1312416)
chr3 (391-488)||(19933529-19933627)
chr3 (391-489)||(11034148-11034246)
[»] chr7 (10 HSPs)
chr7 (318-520)||(28384817-28385021)
chr7 (391-489)||(12527908-12528007)
chr7 (391-491)||(16422436-16422534)
chr7 (391-491)||(26262404-26262505)
chr7 (391-489)||(12502274-12502373)
chr7 (313-491)||(36018684-36018862)
chr7 (391-516)||(16484734-16484860)
chr7 (406-509)||(21267134-21267238)
chr7 (423-509)||(48185867-48185953)
chr7 (312-347)||(16422578-16422613)
[»] chr1 (2 HSPs)
chr1 (312-489)||(18154013-18154192)
chr1 (313-491)||(18902740-18902919)
[»] scaffold0655 (1 HSPs)
scaffold0655 (391-520)||(8330-8460)
[»] scaffold0003 (2 HSPs)
scaffold0003 (391-491)||(11148-11246)
scaffold0003 (312-347)||(11290-11325)
[»] chr4 (2 HSPs)
chr4 (313-516)||(52945606-52945809)
chr4 (407-491)||(28653654-28653739)


Alignment Details
Target: chr6 (Bit Score: 163; Significance: 8e-87; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 14 - 237
Target Start/End: Complemental strand, 15279112 - 15278887
Alignment:
Q  14 cagtgagggccttggaagtagttgtggttgtgaacaattcttcaactaaaggggcattgcatttcgatgctctagtgcgggaaaaggaagaaatggccag 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15279112 cagtgagggccttggaagtagttgtggttgtgaacaattcttcaactgaaggggcattgcatttcgatgctctagtgcgggaaaaggaagaaatggccag 15279013  T
Q  114 aaggatgaccaagatggaggctgagttggcagccacgaagaaaattgctacggaaaatgtgtaacgactcga--ttttannnnnnnngaatgttaattga 211  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| || |||  ||||         ||||||||||| |    
T  15279012 aaggatgaccaagatggaggctgagttggcagccacgaagaaaactgctacggaaaatgtttaacaacccgatttttttttttttttgaatgttaattaa 15278913  T
Q  212 caaaattcttaatgaaaagatgaata 237  Q
    ||||||||||||||||||||||||||    
T  15278912 caaaattcttaatgaaaagatgaata 15278887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 312 - 520
Target Start/End: Complemental strand, 15278817 - 15278609
Alignment:
Q  312 cttctctttgaatttccaaaatagtaaattttacatcnnnnnnntatattcctaataacaagaaacttagccnnnnnnnctacctaagactacacctagc 411  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||| ||||||||       ||||| |||||||||||||||    
T  15278817 cttctctttgaatttccaaaatagtaaattttacatcaaaaaaatatattcctaataacaagacacttagcctttttttctacccaagactacacctagc 15278718  T
Q  412 tggtcaagttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaatgtctaccaccgttttacttgcg 511  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||  |||||||| || ||||||||||||| |||||||||||||||||    
T  15278717 tggtcaagttctagatgcttgtgaaaagttttctcaacaaggctaataccattgtcagaatatataaaacctccaaatgtctgccaccgttttacttgcg 15278618  T
Q  512 tcttcatct 520  Q
    |||||||||    
T  15278617 tcttcatct 15278609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 391 - 491
Target Start/End: Original strand, 34517009 - 34517110
Alignment:
Q  391 ctacctaagactacacctagctggtcaa-gttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaat 489  Q
    ||||| |||||||||||||||||||||| || | |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34517009 ctacccaagactacacctagctggtcaaagtaccggatgcatgtgaaaagttttctcaacaaggctaataccagtgtcggaatatatcaagcctccaaat 34517108  T
Q  490 gt 491  Q
    ||    
T  34517109 gt 34517110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 397 - 491
Target Start/End: Original strand, 34513947 - 34514042
Alignment:
Q  397 aagactacacctagctggtcaa-gttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaatgt 491  Q
    |||||||||||||||||||||| |||| |||||| ||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  34513947 aagactacacctagctggtcaaagttccggatgcatgtgaaatgttttctcaacaaggctaataccactgtcggaatatatcaagcctccaaatgt 34514042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 391 - 491
Target Start/End: Complemental strand, 3510653 - 3510555
Alignment:
Q  391 ctacctaagactacacctagctggtcaagttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaatg 490  Q
    ||||||||||||||||||||||    ||||||| ||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||    
T  3510653 ctacctaagactacacctagctca--aagttctagatgcttgtgaaaagttttctcaacaaggttaataccaatgtcggaatatatcaagcctccaaatg 3510556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 391 - 489
Target Start/End: Complemental strand, 8910937 - 8910839
Alignment:
Q  391 ctacctaagactacacctagctggtca-agttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaat 489  Q
    ||||| ||||||| ||||| ||||||| ||||||||||||||| |||||||||| |||||||||||||||| |||||   ||||||||||| ||||||||    
T  8910937 ctacccaagactaaacctatctggtcatagttctggatgcttgcgaaaagtttt-tcaacaaggctaatactagtgtcataatatatcaagtctccaaat 8910839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 346
Target Start/End: Original strand, 34513863 - 34513896
Alignment:
Q  313 ttctctttgaatttccaaaatagtaaattttaca 346  Q
    |||||||||||||||||||||| |||||||||||    
T  34513863 ttctctttgaatttccaaaataataaattttaca 34513896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 312 - 520
Target Start/End: Complemental strand, 2039979 - 2039769
Alignment:
Q  312 cttctctttgaatttccaaaatagtaaattttacatcnnnnnnntat-attcctaataacaagaaacttagccnnnnnnnctacctaagactacacctag 410  Q
    |||||||||||||||||||||||||||||||||||||       ||| |||||||||| ||||   ||| ||        ||||||||||||||||||||    
T  2039979 cttctctttgaatttccaaaatagtaaattttacatcaaaaatatattattcctaatagcaaggctcttggctttttttcctacctaagactacacctag 2039880  T
Q  411 ctggtcaa-gttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaatgtctaccaccgttttacttg 509  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||| | |||||||||||||||    
T  2039879 ctggtcaaagttctggatgcttgtgaaaagttttctcaacaaggttaataccagtgtcggaatatatcaagcctccgaatgtgtgccaccgttttacttg 2039780  T
Q  510 cgtcttcatct 520  Q
    |||||||||||    
T  2039779 cgtcttcatct 2039769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 395 - 520
Target Start/End: Original strand, 29962255 - 29962381
Alignment:
Q  395 ctaagactacacctagctggtcaa-gttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaatgtct 493  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||      
T  29962255 ctaagactacacctagctggtcaaagttctagatgcttgtgaaaagttttctcaacaaggctaataccagtgtcggaatatatcaagcctccgaatgtgc 29962354  T
Q  494 accaccgttttacttgcgtcttcatct 520  Q
     |||| |||||||||||||||||||||    
T  29962355 cccactgttttacttgcgtcttcatct 29962381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 452
Target Start/End: Original strand, 2584334 - 2584381
Alignment:
Q  406 cctagctggtca-agttctggatgcttgtgaaaagttttctcaacaag 452  Q
    |||||||||||| |||| ||||||||||||||||||||| ||||||||    
T  2584334 cctagctggtcatagttgtggatgcttgtgaaaagttttttcaacaag 2584381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 5e-51; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 313 - 520
Target Start/End: Complemental strand, 6820470 - 6820263
Alignment:
Q  313 ttctctttgaatttccaaaatagtaaattttacatcnnnnnnnta-tattcctaataacaagaaacttagccnnnnnnnctacctaagactacacctagc 411  Q
    ||||||||||||||| |||||||||||||||||||        || ||||||||||||||||  ||||| ||       ||||| || |||||||||| |    
T  6820470 ttctctttgaatttctaaaatagtaaattttacataaaaaatataatattcctaataacaaggcacttaaccttttt--ctacccaacactacacctaac 6820373  T
Q  412 tggtcaa-gttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaatgtctaccaccgttttacttgc 510  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||    
T  6820372 tggtcaaagttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgtcggaatatatcaagcctccaaatgtgcaccaccgttttacttgc 6820273  T
Q  511 gtcttcatct 520  Q
    ||||||||||    
T  6820272 gtcttcatct 6820263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 391 - 520
Target Start/End: Complemental strand, 44669779 - 44669649
Alignment:
Q  391 ctacctaagactacacctagctggtcaa-gttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaat 489  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||| ||| ||||||||||||||||||||||    
T  44669779 ctacccaagactacacctagctggtcaaagttctggatgcttgtgaaaagttttctcatcaaagctaataccactgtcggaatatatcaagcctccaaat 44669680  T
Q  490 gtctaccaccgttttacttgcgtcttcatct 520  Q
    ||   ||||||||||||||||||||||||||    
T  44669679 gtgcgccaccgttttacttgcgtcttcatct 44669649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 312 - 491
Target Start/End: Original strand, 3896387 - 3896567
Alignment:
Q  312 cttctctttgaatttccaaaatagtaaattttacatcnnnnnnntat-attcctaataacaagaaacttagccnnnnnnnctacctaagactacacctag 410  Q
    |||||||||||||||||||||||||||||||| ||||       ||| |||||||||| ||||   ||| |||       ||||| ||||||||||||||    
T  3896387 cttctctttgaatttccaaaatagtaaatttttcatcaaaaatatattattcctaatagcaaggctcttggcctttttt-ctacccaagactacacctag 3896485  T
Q  411 ctggtcaa-gttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaatgt 491  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3896486 ctggtcaaagttttggatgcttgtgaaaagttttctcaacaaggctaataccagtgtcggaatatatcaagcctccaaatgt 3896567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 397 - 484
Target Start/End: Original strand, 5536284 - 5536372
Alignment:
Q  397 aagactacacctagctggtcaa-gttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctc 484  Q
    |||||||||||||||   |||| ||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||    
T  5536284 aagactacacctagccaatcaaagttgtggatgcttgtgaaaagttttttcaacaaggctaataccagtgtcggaatatatgaagcctc 5536372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 312 - 520
Target Start/End: Original strand, 33738 - 33947
Alignment:
Q  312 cttctctttgaatttccaaaatagtaaattttacatcnnnnnnnta-tattcctaataacaagaaacttagccnnnnnnnctacctaagactacacctag 410  Q
    |||||||||||||||||||||||||||||||||||||       || ||||||||||| ||||   ||| ||        ||||||||||||||||||||    
T  33738 cttctctttgaatttccaaaatagtaaattttacatcaaaaatatactattcctaatagcaaggctcttggc-tttttttctacctaagactacacctag 33836  T
Q  411 ctggtcaa-gttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaatgtctaccaccgttttacttg 509  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||| |   |||||||||||||||    
T  33837 ctggtcaaagttctggatgcttgtgaaaagttttctcaacaaggctgataccagtgtcggaatatatcaagcctccgaatatgcgccaccgttttacttg 33936  T
Q  510 cgtcttcatct 520  Q
    |||||||||||    
T  33937 cgtcttcatct 33947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 312 - 516
Target Start/End: Complemental strand, 1312416 - 1312209
Alignment:
Q  312 cttctctttgaatttccaaaatagtaaattttacatcnnnnnnntat-attcctaataacaagaaacttagccnnnnnnn-ctacctaagactacaccta 409  Q
    |||||||||||||||||||||||||||||||||||||       ||| |||||||||| ||||   ||| |||        ||||| |||||||||||||    
T  1312416 cttctctttgaatttccaaaatagtaaattttacatcaaaaatatattattcctaatagcaaggctcttggccttttttttctacccaagactacaccta 1312317  T
Q  410 gctggtcaa-gttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaatgtctaccaccgttttactt 508  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||| ||||||||    
T  1312316 gctggtcaaagttctagatgcttgtgaaaagttttctcaacaaggctaataccagtgtcggaatatatcaagcctccaaatgtgtgccaccattttactt 1312217  T
Q  509 gcgtcttc 516  Q
    | ||||||    
T  1312216 gtgtcttc 1312209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 391 - 488
Target Start/End: Complemental strand, 19933627 - 19933529
Alignment:
Q  391 ctacctaagactacacctagctggtcaag-ttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaa 488  Q
    ||||| ||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19933627 ctacccaagactacacctaactggtcaaggttctggatgcttgtgaaaatttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaa 19933529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 391 - 489
Target Start/End: Original strand, 11034148 - 11034246
Alignment:
Q  391 ctacctaagactacacctagctggtcaa-gttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaat 489  Q
    ||||| ||||||||||||| |||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  11034148 ctacccaagactacacctaactggtcaaagttctggatacttgtgaaaagttt-ctcaacaaggctaataccagtgtcggaatatatcaagcctccaaat 11034246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 7e-44; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 318 - 520
Target Start/End: Complemental strand, 28385021 - 28384817
Alignment:
Q  318 tttgaatttccaaaatagtaaattttacatcnnnnnnntat-attcctaataacaagaaacttagccnnnnnnnctacctaagactacacctagctggtc 416  Q
    |||||||||||||||||||||||||||||||       ||| |||||||||||||||| ||||  |        ||||| ||||||||||||| ||||||    
T  28385021 tttgaatttccaaaatagtaaattttacatcaaaaatatattattcctaataacaagacacttgacttttttttctacccaagactacacctaactggtc 28384922  T
Q  417 aag-ttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaatgtctaccaccgttttacttgcgtctt 515  Q
    ||  |||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||   | |||||||||||||||||||    
T  28384921 aaaattctggttgcttgtgaaaagttttctcaacaaggctaataccagtgtcggaatataccaagcctccaaatgtgcgcaaccgttttacttgcgtctt 28384822  T
Q  516 catct 520  Q
    |||||    
T  28384821 catct 28384817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 391 - 489
Target Start/End: Original strand, 12527908 - 12528007
Alignment:
Q  391 ctacctaagactacacctagctggtcaa-gttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaat 489  Q
    ||||| ||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12527908 ctacccaaggctacacctagctggtcaaagttctggatgcttgtaaaaagttttctcaacaaggctaataccagtgtcggaatatatcaagcctccaaat 12528007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 391 - 491
Target Start/End: Complemental strand, 16422534 - 16422436
Alignment:
Q  391 ctacctaagactacacctagctggtcaagttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaatg 490  Q
    ||||||||||||||||||||||    ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  16422534 ctacctaagactacacctagctca--aagttctagatgcttgtgaaaagttttctcaacaaggctaataccagtgtcggaatatatcgagcctccaaatg 16422437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 391 - 491
Target Start/End: Original strand, 26262404 - 26262505
Alignment:
Q  391 ctacctaagactacacctagctggtcaa-gttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaat 489  Q
    ||||| ||||||||||||| |||||||| |||| ||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  26262404 ctacccaagactacacctaactggtcaaagttccggatgcttgtgaaaatttttctcaacaaggctaatactagtgtcggaatatatcaagcctccaaat 26262503  T
Q  490 gt 491  Q
    ||    
T  26262504 gt 26262505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 391 - 489
Target Start/End: Original strand, 12502274 - 12502373
Alignment:
Q  391 ctacctaagactacacctagctggtcaa-gttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaat 489  Q
    ||||| |||||||||||||||||||||| |||||||||| |||| |||||||||||||| |||||||||||||||||  |||||||||||||||||||||    
T  12502274 ctacccaagactacacctagctggtcaaagttctggatgattgtaaaaagttttctcaataaggctaataccagtgtcagaatatatcaagcctccaaat 12502373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 313 - 491
Target Start/End: Complemental strand, 36018862 - 36018684
Alignment:
Q  313 ttctctttgaatttccaaaatagtaaattttacatcnnnnnnnt-atattcctaataacaagaaacttagccnnnnnnnctacctaagactacacctagc 411  Q
    ||||||||||||||||||||||||||| |||||| |       | |||||||||||| ||||| | || |||       ||||| ||||||||| |||||    
T  36018862 ttctctttgaatttccaaaatagtaaagtttacaacaaaagtataatattcctaatatcaagacatttggcc--tttttctacccaagactacatctagc 36018765  T
Q  412 tggtc-aagttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaatgt 491  Q
    ||||| |||||  |||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||    
T  36018764 tggtcaaagtttcggatgcttgtgaaaagttttttcaacaaggctaatactagtgttagaatatatcaagcctccaaatgt 36018684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 391 - 516
Target Start/End: Complemental strand, 16484860 - 16484734
Alignment:
Q  391 ctacctaagactacacctagctggtca-agttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaat 489  Q
    ||||| |||| || |||||||||| || ||||  ||||||||| |||||||||||||| |||||||||||||| ||| ||||| ||||||||||||||||    
T  16484860 ctacccaagaataaacctagctggccatagtttcggatgcttgcgaaaagttttctcatcaaggctaataccactgtcggaatttatcaagcctccaaat 16484761  T
Q  490 gtctaccaccgttttacttgcgtcttc 516  Q
    ||  ||||||| |||||||||||||||    
T  16484760 gtgcaccaccgctttacttgcgtcttc 16484734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 406 - 509
Target Start/End: Original strand, 21267134 - 21267238
Alignment:
Q  406 cctagctggtca-agttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaatgtctaccaccgtttt 504  Q
    ||||| |||||| |||| |||||||||||||||||||||||||||||| ||||||| |||||  ||| |||  ||||||||||||||  ||||| ||||     
T  21267134 cctagttggtcatagttgtggatgcttgtgaaaagttttctcaacaagactaatactagtgtcagaaaatagtaagcctccaaatgtgcaccactgtttc 21267233  T
Q  505 acttg 509  Q
    |||||    
T  21267234 acttg 21267238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 423 - 509
Target Start/End: Original strand, 48185867 - 48185953
Alignment:
Q  423 tggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaatgtctaccaccgttttacttg 509  Q
    ||||||||||||||||||||||| |||||| |||||||||||||  ||| |||  ||| ||||||||||  ||||| |||| |||||    
T  48185867 tggatgcttgtgaaaagttttcttaacaagactaataccagtgtcagaaaatagtaagactccaaatgtgcaccactgtttcacttg 48185953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 347
Target Start/End: Complemental strand, 16422613 - 16422578
Alignment:
Q  312 cttctctttgaatttccaaaatagtaaattttacat 347  Q
    |||||| |||||||||||||||||||||||||||||    
T  16422613 cttctccttgaatttccaaaatagtaaattttacat 16422578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 312 - 489
Target Start/End: Complemental strand, 18154192 - 18154013
Alignment:
Q  312 cttctctttgaatttccaaaatagtaaattttacatcnnnnnnntatatt---cctaataacaagaaacttagccnnnnnnnctacctaagactacacct 408  Q
    ||||||||||||||||||||||||||||||||||||        ||||||   ||||||||||||| |||| |||       ||||| ||||||||||||    
T  18154192 cttctctttgaatttccaaaatagtaaattttacat-aaaaaaatatattatccctaataacaagacacttggcctttttc-ctacccaagactacacct 18154095  T
Q  409 agctggtcaa-gttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaat 489  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  18154094 agctggtcaaagttctggatgcttgtgaaaagttttgtcaacaaggctaataccagtgtcggaatatatcaagcctccaaat 18154013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 313 - 491
Target Start/End: Complemental strand, 18902919 - 18902740
Alignment:
Q  313 ttctctttgaatttccaaaatagtaaattttacatcnnnnnnnt-atattcctaataacaagaaacttagccnnnnnnnctacctaagactacacctagc 411  Q
    ||||| |||||||||||||||||||||||||||||        | |||| | ||||||||||| |||| |||       ||||| ||||||||||||| |    
T  18902919 ttctccttgaatttccaaaatagtaaattttacataaaaaatataatatccttaataacaagacacttggcc-tttttcctacccaagactacacctaac 18902821  T
Q  412 tggtcaa-gttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaatgt 491  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  18902820 tggtcaaggttctggatgcttgtggaaagttttctcaacaaggctaataccagtgtcggaatatatcaagcctccaaatgt 18902740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 391 - 520
Target Start/End: Complemental strand, 8460 - 8330
Alignment:
Q  391 ctacctaagactacacctagctggtca-agttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaat 489  Q
    ||||| |||| || ||||| ||||||| ||||| ||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||| ||| ||||    
T  8460 ctacccaagagtaaacctaactggtcatagttccggatgcttgtgaaaagttttctcaagaaggctaatatcagtgtcggaatatatcaagtctctaaat 8361  T
Q  490 gtctaccaccgttttacttgcgtcttcatct 520  Q
    ||  |||||||||||||||||||||||||||    
T  8360 gtgcaccaccgttttacttgcgtcttcatct 8330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 391 - 491
Target Start/End: Complemental strand, 11246 - 11148
Alignment:
Q  391 ctacctaagactacacctagctggtcaagttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaatg 490  Q
    ||||||||||||||||||||||    ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  11246 ctacctaagactacacctagctca--aagttctagatgcttgtgaaaagttttctcaacaaggctaataccagtgtcggaatatatcgagcctccaaatg 11149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 347
Target Start/End: Complemental strand, 11325 - 11290
Alignment:
Q  312 cttctctttgaatttccaaaatagtaaattttacat 347  Q
    |||||| |||||||||||||||||||||||||||||    
T  11325 cttctccttgaatttccaaaatagtaaattttacat 11290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 313 - 516
Target Start/End: Complemental strand, 52945809 - 52945606
Alignment:
Q  313 ttctctttgaatttccaaaatagtaaattttacatcnnnnnnnt-atattcctaataacaagaaacttagccnnnnnnnctacctaagactacacctagc 411  Q
    ||||||||||||||||||||| ||||||||||| |        | |||||||||||||||||| ||||  ||       |||||||| ||||||| |||     
T  52945809 ttctctttgaatttccaaaattgtaaattttacgtaaaaaatataatattcctaataacaagacacttgacc--tttttctacctaatactacacttagg 52945712  T
Q  412 tggtc-aagttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaatgtctaccaccgttttacttgc 510  Q
    | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||  || || |||||||||||||||||  |||||| ||| || |||    
T  52945711 tcgtcgaagttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgtcagagtaaatcaagcctccaaatgtgcaccaccatttcacgtgc 52945612  T
Q  511 gtcttc 516  Q
    ||||||    
T  52945611 gtcttc 52945606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 407 - 491
Target Start/End: Original strand, 28653654 - 28653739
Alignment:
Q  407 ctagctggtcaa-gttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaatgt 491  Q
    |||||||||||| ||||||||||||||||||||||||| | |||||||||||||||| ||| |||||||||||| |||||||||||    
T  28653654 ctagctggtcaaagttctggatgcttgtgaaaagtttttttaacaaggctaataccattgtcggaatatatcaaacctccaaatgt 28653739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University