View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17278_low_4 (Length: 388)
Name: NF17278_low_4
Description: NF17278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17278_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 16 - 370
Target Start/End: Original strand, 43568127 - 43568485
Alignment:
| Q |
16 |
atcgttccaaccctttctccaacttcaacatttctgtgaatcctgcaggctcctagcaatgctcc----ccatactggagcatttggttttataggcatt |
111 |
Q |
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| T |
43568127 |
atcgttccaaccctttctccaacttcaacatttctgtgaatcctgcaggctcctagcaatgctccctccccatactggagcatttggttttataggcatt |
43568226 |
T |
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| Q |
112 |
tcaagaataaaattctccgcctcttccaactttcctgcccttccaagaagatcaaccatacatccataatgttccaatctcggctctaacctataatccc |
211 |
Q |
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| T |
43568227 |
tcaagaataaaattctccgcctcttccaactttcctgcccttccaagaagatcaaccatacatccataatgttccaatctcggctctaacctataatccc |
43568326 |
T |
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| Q |
212 |
ttttcatgctttcaaatatttcttgacccttttctaccagccctccatgactataagctttcaaaaccgctgtaaaagtaatatctctaggaactatccc |
311 |
Q |
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| T |
43568327 |
ttttcatgctttcaaatatttcttgacccttttctaccagccctccatgactataagctttcaaaaccgctgtaaaagtaatatctctaggaactatccc |
43568426 |
T |
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| Q |
312 |
atttttcaccattacataaaaatactcaagcgcttcctctgcataaccatgcatagcta |
370 |
Q |
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| T |
43568427 |
atttttcaccattacataaaaatactcaagcgcttcctctgcataaccatgcatagcta |
43568485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 148 - 187
Target Start/End: Complemental strand, 28405603 - 28405564
Alignment:
| Q |
148 |
gcccttccaagaagatcaaccatacatccataatgttcca |
187 |
Q |
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| T |
28405603 |
gcccttccaagaaggtcaaccatacaaccataatgttcca |
28405564 |
T |
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