View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17278_low_5 (Length: 379)
Name: NF17278_low_5
Description: NF17278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17278_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 34936980 - 34937346
Alignment:
| Q |
1 |
cgaagattttcaagatgtttattcatttaatggaacaagaattcccggtatcaaaaccgttttctttcaaggacttaaagatatgaattacttagcagga |
100 |
Q |
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| T |
34936980 |
cgaagattttcaagatgtttattcatttaatggaacaagaattcccggtatcaaaaccgttttctttcaaggacttaaagatatgaattacttagcagga |
34937079 |
T |
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| Q |
101 |
gaaactaatggaactcatgaatatgatccaagggtgccagggaaacaacagtctgtgattgcttttcataagaaacacactaaaaatttcaacgtcgagc |
200 |
Q |
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| T |
34937080 |
gaaactaatggaactcatgaatatgatccaagggtgccagggaaacaacagtctgtgattgcttttcataagaaacacactaaaaatttcaacgtcgagc |
34937179 |
T |
|
| Q |
201 |
gtgacgcttttccttctaaggtatacttcaatggaatggaatgttcaatgcctccacgtagacctactaaaagtgcaggacataaatcttctatcagcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34937180 |
gtgacgcttttccttctaaggtatacttcaatggaatggaatgttcaatgcctccacgtagacctactaaaagtgcaggacataaatcttctatcagcat |
34937279 |
T |
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| Q |
301 |
cgttgcagtcgtcttcacagcttttatgacatttttgctcatgaccgatcgctttttctgagatatt |
367 |
Q |
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| T |
34937280 |
cgttgcagtcgtcttcacagcttttatgacatttttgctcatgactgatcgctttttctgagatatt |
34937346 |
T |
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