View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17279_high_10 (Length: 338)
Name: NF17279_high_10
Description: NF17279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17279_high_10 |
 | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 22)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 34 - 321
Target Start/End: Original strand, 6448661 - 6448948
Alignment:
| Q |
34 |
tgaaatccaccaagttatttgatttacaacaattggataaaagcaattgttggagtttatttgttacgcatgcttttcaaggcaaaagtgagtgtgaata |
133 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||| | || ||||||||||| || || |||| ||||||||| |
|
|
| T |
6448661 |
tgaaatccaccaagttatttgatttacaccaattggacaaaagcaattgttggagtttgtttttgacacatgcttttcatggaaagagtgtgtgtgaata |
6448760 |
T |
|
| Q |
134 |
tctaaatcttgaatcaattggcaggaaaatagtgaacaagtgtggagggctgcctttagctataaaatcattgggccaacttttgcggaaaaagtttact |
233 |
Q |
| |
|
|| || ||||||||||||||| ||||||||| |||||| |||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||| || |
|
|
| T |
6448761 |
tccaattcttgaatcaattggtaggaaaatattgaacatgtgtggagggttgcctttagctataaaatcactgggccaacatttgcggaaaaagttttct |
6448860 |
T |
|
| Q |
234 |
caagatgattggattcagatattggagactgatatgtggcgtttatcagacagggaccacaccattaactcagtactgagattgagtt |
321 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
6448861 |
caagatgaatggatgaagatattggagactgatatgtggcgtttatcagacagagaccattccattaactcagtactgagattgagtt |
6448948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 321
Target Start/End: Original strand, 6520016 - 6520323
Alignment:
| Q |
14 |
gaaggtagcagatcatgtcttgaaatccaccaagttatttgatttacaacaattggataaaagcaattgttggagtttatttgttacgcatgcttttcaa |
113 |
Q |
| |
|
||||||||||||||||||| |||| |||||| ||||| || ||||||| |||||||| ||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
6520016 |
gaaggtagcagatcatgtcctgaactccaccgagttaattcatttacatcaattggacaaaagcaattgttggagtttatttgagacacatgcttttcaa |
6520115 |
T |
|
| Q |
114 |
ggcaaaagtgagtgtgaatatctaaatcttgaatcaattggcaggaaaatagtgaacaagtgtggagggctgcctttagctataaaatcattgggccaac |
213 |
Q |
| |
|
|||| ||| |||||| |||| ||| |||||| | ||||||| |||||||||| |||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
6520116 |
ggcatgcgtgtgtgtgactatccaaaacttgaaacgattggcatgaaaatagtggacaagtgtggtgggttgcctttagctataaaatcattgggccaac |
6520215 |
T |
|
| Q |
214 |
ttttgcggaaaaagtttactcaagatgattggattcagatattggagactgatatgtggcgtttatcagacagggaccacaccattaactcagtactgag |
313 |
Q |
| |
|
||||||| ||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
6520216 |
ttttgcgaaaaaagttttctcaagatgaatggatggagatattggagactgatatgtggcgtttatcagacagagaccacaccattaactcagtattgag |
6520315 |
T |
|
| Q |
314 |
attgagtt |
321 |
Q |
| |
|
|||||||| |
|
|
| T |
6520316 |
attgagtt |
6520323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 36 - 321
Target Start/End: Original strand, 6554314 - 6554599
Alignment:
| Q |
36 |
aaatccaccaagttatttgatttacaacaattggataaaagcaattgttggagtttatttgttacgcatgcttttcaaggcaaaagtgagtgtgaatatc |
135 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| || |||||||||||||| ||||||| ||||||||||| |
|
|
| T |
6554314 |
aaatcaaccaaattatttgatttacaacaattggaaaaaagcaattgttggagattatttgtgacacatgcttttcaaggaaaaagtgtgtgtgaatatc |
6554413 |
T |
|
| Q |
136 |
taaatcttgaatcaattggcaggaaaatagtgaacaagtgtggagggctgcctttagctataaaatcattgggccaacttttgcggaaaaagtttactca |
235 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||| ||| ||||| || || | |
|
|
| T |
6554414 |
caaatcttgaaacaattgggaggaaaatagtggacaagtgtggagggttgcctttagctataaaatcattggcacaacttctgcataaaaaaatttctga |
6554513 |
T |
|
| Q |
236 |
agatgattggattcagatattggagactgatatgtggcgtttatcagacagggaccacaccattaactcagtactgagattgagtt |
321 |
Q |
| |
|
| |||| |||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
6554514 |
acatgaatggattaagatattggagactgatatgtggcgtttatcagatggggaccacaacattaactcagtactaagattgagtt |
6554599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 48 - 321
Target Start/End: Complemental strand, 6736131 - 6735858
Alignment:
| Q |
48 |
ttatttgatttacaacaattggataaaagcaattgttggagtttatttgttacgcatgcttttcaaggcaaaagtgagtgtgaatatctaaatcttgaat |
147 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||| || ||||| |||||||| ||||||| |||||||||| ||||||||||| |
|
|
| T |
6736131 |
ttatttgatttacaacaattggaaaaaagcaattgttggagattatttgtgacacatgcgtttcaaggaaaaagtgtttgtgaatatccaaatcttgaat |
6736032 |
T |
|
| Q |
148 |
caattggcaggaaaatagtgaacaagtgtggagggctgcctttagctataaaatcattgggccaacttttgcggaaaaagtttactcaagatgattggat |
247 |
Q |
| |
|
||||||| | |||||||||| | |||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||| || || || |||| ||||| |
|
|
| T |
6736031 |
caattgggaagaaaatagtggagaagtgtggagggttgcctctagctataaaatcattgggccaacttttgcgtaaaaaactttctgaacatgaatggat |
6735932 |
T |
|
| Q |
248 |
tcagatattggagactgatatgtggcgtttatcagacagggaccacaccattaactcagtactgagattgagtt |
321 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
6735931 |
taagatattggagactgatatgtggcgtttatcagatggggaccacaacattaactcagtactaagattgagtt |
6735858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 16 - 321
Target Start/End: Original strand, 6479838 - 6480143
Alignment:
| Q |
16 |
aggtagcagatcatgtcttgaaatccaccaagttatttgatttacaacaattggataaaagcaattgttggagtttatttgttacgcatgcttttcaagg |
115 |
Q |
| |
|
|||| ||| |||||||| |||||||||||| ||||| |||| ||| ||||||| ||||| |||||||||| |||||||| || |||||||||||||| |
|
|
| T |
6479838 |
aggtggcatatcatgtcgtgaaatccaccatgttatgtgatctacgtcaattggtcaaaagtgattgttggagattatttgtgactcatgcttttcaagg |
6479937 |
T |
|
| Q |
116 |
caaaagtgagtgtgaatatctaaatcttgaatcaattggcaggaaaatagtgaacaagtgtggagggctgcctttagctataaaatcattgggccaactt |
215 |
Q |
| |
|
||| |||| |||||| |||| ||| |||||||||||||||||||||||| || ||||||||| |||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
6479938 |
caagagtgtgtgtgactatccaaaacttgaatcaattggcaggaaaataatggacaagtgtgaagggttgcctttagctataatatcattgggccaactt |
6480037 |
T |
|
| Q |
216 |
ttgcggaaaaagtttactcaagatgattggattcagatattggagactgatatgtggcgtttatcagacagggaccacaccattaactcagtactgagat |
315 |
Q |
| |
|
||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| ||| ||||| |||| ||||||| |
|
|
| T |
6480038 |
ttgcggaaaaagttttctcaagatgaatggatgaagatattggagactgatatgtggcgtttatcagacgtggacaacaaaattaatccagtgctgagat |
6480137 |
T |
|
| Q |
316 |
tgagtt |
321 |
Q |
| |
|
|||||| |
|
|
| T |
6480138 |
tgagtt |
6480143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 20 - 321
Target Start/End: Complemental strand, 6947438 - 6947137
Alignment:
| Q |
20 |
agcagatcatgtcttgaaatccaccaagttatttgatttacaacaattggataaaagcaattgttggagtttatttgttacgcatgcttttcaaggcaaa |
119 |
Q |
| |
|
|||| ||||||| || ||||||||| ||||||||||||||||||||||| | | |||| |||||||||||||||||| || |||||||||||||||| |
|
|
| T |
6947438 |
agcatatcatgttttaaaatccaccgagttatttgatttacaacaattgaaaacaagccattgttggagtttatttgagacacatgcttttcaaggcatg |
6947339 |
T |
|
| Q |
120 |
agtgagtgtgaatatctaaatcttgaatcaattggcaggaaaatagtgaacaagtgtggagggctgcctttagctataaaatcattgggccaacttttgc |
219 |
Q |
| |
|
||| |||||| ||| ||| |||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6947338 |
cgtgtgtgtgacgatccaaaacttgaatcaattgggaggaaaatagtggacaagtgtggagggttgcctttagctataaaatcactgggccaacttttgc |
6947239 |
T |
|
| Q |
220 |
ggaaaaagtttactcaagatgattggattcagatattggagactgatatgtggcgtttatcagacagggaccacaccattaactcagtactgagattgag |
319 |
Q |
| |
|
| ||||||||| |||||||||| ||||| |||||||||||||||||||||||||| |||| |||| ||||| ||| ||||| |||| ||||||||||| |
|
|
| T |
6947238 |
gaaaaaagttttctcaagatgaatggatgcagatattggagactgatatgtggcgattattagacggggacaacaaaattaatccagtgctgagattgag |
6947139 |
T |
|
| Q |
320 |
tt |
321 |
Q |
| |
|
|| |
|
|
| T |
6947138 |
tt |
6947137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 16 - 321
Target Start/End: Complemental strand, 8454827 - 8454522
Alignment:
| Q |
16 |
aggtagcagatcatgtcttgaaatccaccaagttatttgatttacaacaattggataaaagcaattgttggagtttatttgttacgcatgcttttcaagg |
115 |
Q |
| |
|
|||| |||||| ||||| ||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
8454827 |
aggtggcagataatgtcctgaaatcgacagagttatttgatttacaacaattggacaaaagcaattgttggagtttatttgtgacacatgcttttcaagg |
8454728 |
T |
|
| Q |
116 |
caaaagtgagtgtgaatatctaaatcttgaatcaattggcaggaaaatagtgaacaagtgtggagggctgcctttagctataaaatcattgggccaactt |
215 |
Q |
| |
|
|| |||| || |||||||| ||||||||||||| |||| || ||||||||| | |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8454727 |
aaagagtgtgtctgaatatccaaatcttgaatcagttggtagaaaaatagtggaaaagtgtggagggttgcctttagctataaaatcattgggccaactt |
8454628 |
T |
|
| Q |
216 |
ttgcggaaaaagtttactcaagatgattggattcagatattggagactgatatgtggcgtttatcagacagggaccacaccattaactcagtactgagat |
315 |
Q |
| |
|
||||||||| ||| || || |||| |||||| | |||||||||||||||||||||||||||||| | || |||| | |||||||||||||||||| |
|
|
| T |
8454627 |
ctgcggaaaacattttctgaacatgaatggattaatatattggagactgatatgtggcgtttatcaaaagtagatcacaacgttaactcagtactgagat |
8454528 |
T |
|
| Q |
316 |
tgagtt |
321 |
Q |
| |
|
|||||| |
|
|
| T |
8454527 |
tgagtt |
8454522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 16 - 321
Target Start/End: Complemental strand, 8589902 - 8589597
Alignment:
| Q |
16 |
aggtagcagatcatgtcttgaaatccaccaagttatttgatttacaacaattggataaaagcaattgttggagtttatttgttacgcatgcttttcaagg |
115 |
Q |
| |
|
|||||||| ||||||| | ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| || |||||||||||||| |
|
|
| T |
8589902 |
aggtagcatatcatgttcttaaatccaccaagttatttgatttacaacaattggacaaaagcgattgttggagtttatttgtgacacatgcttttcaagg |
8589803 |
T |
|
| Q |
116 |
caaaagtgagtgtgaatatctaaatcttgaatcaattggcaggaaaatagtgaacaagtgtggagggctgcctttagctataaaatcattgggccaactt |
215 |
Q |
| |
|
|| | || ||||||||||| |||||||||||||| ||||| ||||||| || | |||||||||||| ||||||||||| |||||||| |||||||||| |
|
|
| T |
8589802 |
aaagaatgtgtgtgaatatccaaatcttgaatcaactggcaagaaaatactggataagtgtggagggttgcctttagctgtaaaatcaatgggccaactc |
8589703 |
T |
|
| Q |
216 |
ttgcggaaaaagtttactcaagatgattggattcagatattggagactgatatgtggcgtttatcagacagggaccacaccattaactcagtactgagat |
315 |
Q |
| |
|
||||| | ||| ||| ||||| |||| |||||| |||||||||||||| ||||||||||||||||||| |||| |||| ||| |||||||| ||||||| |
|
|
| T |
8589702 |
ttgcgaagaaatttttctcaacatgagtggattaagatattggagactaatatgtggcgtttatcagatggggaacacagcataaactcagttctgagat |
8589603 |
T |
|
| Q |
316 |
tgagtt |
321 |
Q |
| |
|
| |||| |
|
|
| T |
8589602 |
taagtt |
8589597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 127 - 321
Target Start/End: Complemental strand, 5268121 - 5267927
Alignment:
| Q |
127 |
gtgaatatctaaatcttgaatcaattggcaggaaaatagtgaacaagtgtggagggctgcctttagctataaaatcattgggccaacttttgcggaaaaa |
226 |
Q |
| |
|
||||||| | |||||||||||||||||| | ||||||||| | |||||||||||| | ||||||||| ||||| | ||||| | || ||||| | ||| |
|
|
| T |
5268121 |
gtgaatacccaaatcttgaatcaattggaaagaaaatagtagataagtgtggagggttacctttagctgtaaaaactttgggaaatctcttgcgaagaaa |
5268022 |
T |
|
| Q |
227 |
gtttactcaagatgattggattcagatattggagactgatatgtggcgtttatcagacagggaccacaccattaactcagtactgagattgagtt |
321 |
Q |
| |
|
|| ||||| |||| ||| || ||||||||||||| |||||||||||||||||||| | ||| | |||||| ||||||||||||||||||| |
|
|
| T |
5268021 |
attctctcaacatgaatgggttaagatattggagacagatatgtggcgtttatcagaaggtgacattaacattaattcagtactgagattgagtt |
5267927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 127 - 321
Target Start/End: Complemental strand, 5250234 - 5250040
Alignment:
| Q |
127 |
gtgaatatctaaatcttgaatcaattggcaggaaaatagtgaacaagtgtggagggctgcctttagctataaaatcattgggccaacttttgcggaaaaa |
226 |
Q |
| |
|
||||||||| |||||||||||| ||||| | |||||| | ||||||||||||| |||| |||||| ||||| | ||||| | || ||||| | ||| |
|
|
| T |
5250234 |
gtgaatatccaaatcttgaatctattggtaagaaaattataggcaagtgtggagggttgccattagctgtaaaaactttgggaaatctcttgcgaagaaa |
5250135 |
T |
|
| Q |
227 |
gtttactcaagatgattggattcagatattggagactgatatgtggcgtttatcagacagggaccacaccattaactcagtactgagattgagtt |
321 |
Q |
| |
|
|||| ||||| ||||||| || ||||||||||||| |||||||||||||||||||| | || | |||||| ||||||||||||||||||| |
|
|
| T |
5250134 |
gttttctcaacgtgattgggttaagatattggagacagatatgtggcgtttatcagagggcgagagtaacattaattcagtactgagattgagtt |
5250040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 63 - 205
Target Start/End: Complemental strand, 5280810 - 5280668
Alignment:
| Q |
63 |
caattggataaaagcaattgttggagtttatttgttacgcatgcttttcaaggcaaaagtgagtgtgaatatctaaatcttgaatcaattggcaggaaaa |
162 |
Q |
| |
|
|||||||| ||||| || |||||| ||||||||| | ||||||||||| || |||| || ||||||||| |||||||||||||||||| | ||||| |
|
|
| T |
5280810 |
caattggaggaaagcgatggttggaatttatttgtgagacatgcttttcacggaaaaaatgcaagtgaatatccaaatcttgaatcaattgggaagaaaa |
5280711 |
T |
|
| Q |
163 |
tagtgaacaagtgtggagggctgcctttagctataaaatcatt |
205 |
Q |
| |
|
| || |||||||||||||||| |||||||||| | |||||||| |
|
|
| T |
5280710 |
ttgtaaacaagtgtggagggccgcctttagctctgaaatcatt |
5280668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 79 - 280
Target Start/End: Original strand, 8568864 - 8569065
Alignment:
| Q |
79 |
attgttggagtttatttgttacgcatgcttttcaaggcaaaagtgagtgtgaatatctaaatcttgaatcaattggcaggaaaatagtgaacaagtgtgg |
178 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||| || | || || |||||||| |||||||||||| ||||| | ||| || || | |||||||| |
|
|
| T |
8568864 |
attgttggagtttatttgtgaaacatgcttttcaaggaaagaatgtgtttgaatatccaaatcttgaatcgattggaaagaagattgtagaaaagtgtgg |
8568963 |
T |
|
| Q |
179 |
agggctgcctttagctataaaatcattgggccaacttttgcggaaaaagtttactcaagatgattggattcagatattggagactgatatgtggcgttta |
278 |
Q |
| |
|
|||| ||||||||||| | ||| ||||||| | || |||| | ||| ||| |||||| ||| ||| | | |||||||||||||||||||||| |||| |
|
|
| T |
8568964 |
agggttgcctttagctgtgaaaacattggggaatctcttgcaaagaaaattttctcaaggtgaatggtctaacatattggagactgatatgtggcattta |
8569063 |
T |
|
| Q |
279 |
tc |
280 |
Q |
| |
|
|| |
|
|
| T |
8569064 |
tc |
8569065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 127 - 283
Target Start/End: Complemental strand, 5298796 - 5298640
Alignment:
| Q |
127 |
gtgaatatctaaatcttgaatcaattggcaggaaaatagtgaacaagtgtggagggctgcctttagctataaaatcattgggccaacttttgcggaaaaa |
226 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||| || | |||||||||||| ||||| ||||| ||||| ||||||| | || ||||| | ||| |
|
|
| T |
5298796 |
gtgaatatccaaatcttgaatcaattggcaagaaaatcgtagaaaagtgtggagggttgcctctagctgtaaaagcattggggaatctcttgcgaagaaa |
5298697 |
T |
|
| Q |
227 |
gtttactcaagatgattggattcagatattggagactgatatgtggcgtttatcaga |
283 |
Q |
| |
|
|| ||||| ||| ||| || ||||||||||||| ||| ||||| |||||||||| |
|
|
| T |
5298696 |
attctctcaacgtgaatgggttaagatattggagacagatctgtggtgtttatcaga |
5298640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 226
Target Start/End: Complemental strand, 8471719 - 8471527
Alignment:
| Q |
34 |
tgaaatccaccaagttatttgatttacaacaattggataaaagcaattgttggagtttatttgttacgcatgcttttcaaggcaaaagtgagtgtgaata |
133 |
Q |
| |
|
||||||| || |||||||||||||| |||||||||| || || | ||||||||||||||| | | |||||||| ||||||| | | ||||| |
|
|
| T |
8471719 |
tgaaatctacaaagttatttgatttgaaacaattggagaagagtgactgttggagtttattttccagtcttgcttttcctggcaaaaaattgagcgaata |
8471620 |
T |
|
| Q |
134 |
tctaaatcttgaatcaattggcaggaaaatagtgaacaagtgtggagggctgcctttagctataaaatcattgggccaacttttgcggaaaaa |
226 |
Q |
| |
|
| |||||||||||||||||||| || || || | |||||||||||||||||||||||| | ||| ||||||| | |||||||||||||| |
|
|
| T |
8471619 |
cccaaatcttgaatcaattggcaaaaatattgtagataagtgtggagggctgcctttagctgtgaaaacattgggaaaccttttgcggaaaaa |
8471527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 127 - 321
Target Start/End: Original strand, 4388907 - 4389101
Alignment:
| Q |
127 |
gtgaatatctaaatcttgaatcaattggcaggaaaatagtgaacaagtgtggagggctgcctttagctataaaatcattgggccaacttttgcggaaaaa |
226 |
Q |
| |
|
|||| |||| |||||||| ||||||||||| |||||| || | ||||||| |||| | || |||||| ||||| | ||||| | || ||||| | ||| |
|
|
| T |
4388907 |
gtgagtatccaaatcttgtatcaattggcaagaaaattgtagataagtgtgtagggtttccattagctgtaaaaacgttgggaaatctcttgcgaagaaa |
4389006 |
T |
|
| Q |
227 |
gtttactcaagatgattggattcagatattggagactgatatgtggcgtttatcagacagggaccacaccattaactcagtactgagattgagtt |
321 |
Q |
| |
|
|| ||||| ||| ||| || |||||||||||| |||||||||| ||||||||| | ||| | | |||||| ||||||||||||||||||| |
|
|
| T |
4389007 |
attctctcaacgtgaatgggttaggatattggagaccgatatgtggcatttatcagaaggtgacaataacattaattcagtactgagattgagtt |
4389101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 128 - 290
Target Start/End: Complemental strand, 7750088 - 7749926
Alignment:
| Q |
128 |
tgaatatctaaatcttgaatcaattggcaggaaaatagtgaacaagtgtggagggctgcctttagctataaaatcattgggccaacttttgcggaaaaag |
227 |
Q |
| |
|
|||||||| |||||| || || || |||| ||||||||| | |||||||| ||| ||||||||||| || || ||||||| ||| | |||| || || |
|
|
| T |
7750088 |
tgaatatccaaatctcgagtcgatcggcaagaaaatagtagaaaagtgtggggggttgcctttagctctagaaacattggggcaattattgcaaaacaaa |
7749989 |
T |
|
| Q |
228 |
tttactcaagatgattggattcagatattggagactgatatgtggcgtttatcagacagggac |
290 |
Q |
| |
|
|| | || ||| |||||| | ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7749988 |
ttctgtgaaactgaatggattaaaatattggagactgatatgtggcgtttatcagacggggac |
7749926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 34 - 226
Target Start/End: Original strand, 6838772 - 6838964
Alignment:
| Q |
34 |
tgaaatccaccaagttatttgatttacaacaattggataaaagcaattgttggagtttatttgttacgcatgcttttcaaggcaaaagtgagtgtgaata |
133 |
Q |
| |
|
||||||| || |||||||||||||| |||||||||| || || | |||||||||||||| || | ||||||||| ||||||| || | ||||| |
|
|
| T |
6838772 |
tgaaatctacaaagttatttgatttgaaacaattggagaagagtgacagttggagtttattttccacacttgcttttcacggcaaaaatgcaagcgaata |
6838871 |
T |
|
| Q |
134 |
tctaaatcttgaatcaattggcaggaaaatagtgaacaagtgtggagggctgcctttagctataaaatcattgggccaacttttgcggaaaaa |
226 |
Q |
| |
|
| ||| |||||||||||||||| || || || | |||||||||||| ||||||||||| | ||| ||||||| | || ||||||||||| |
|
|
| T |
6838872 |
cccaaaacttgaatcaattggcaaaaagattgtagataagtgtggagggttgcctttagctgtgaaaacattggggaacctcttgcggaaaaa |
6838964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 6265825 - 6265742
Alignment:
| Q |
83 |
ttggagtttatttgttacgcatgcttttcaaggcaaaagtgagtgtgaatatctaaatcttgaatcaattggcaggaaaatagt |
166 |
Q |
| |
|
||||||||||||||| | |||||||||||||||| | || || |||||||| ||||||||||| ||||||| ||||||||| |
|
|
| T |
6265825 |
ttggagtttatttgtgagatatgcttttcaaggcaagaatgtgtttgaatatccaaatcttgaattgattggcaagaaaatagt |
6265742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 283
Target Start/End: Original strand, 6591296 - 6591451
Alignment:
| Q |
128 |
tgaatatctaaatcttgaatcaattggcaggaaaatagtgaacaagtgtggagggctgcctttagctataaaatcattgggccaacttttgcggaaaaag |
227 |
Q |
| |
|
|||||||| || ||||| || || |||| ||||||||| | |||||||| ||| | ||||||||| ||||| || |||| |||||||||| ||||| |
|
|
| T |
6591296 |
tgaatatccaactcttgtattgataggcaagaaaatagtagaaaagtgtggggggattcctttagctctaaaaacaatggggcaacttttgcaaaaaaaa |
6591395 |
T |
|
| Q |
228 |
tttactcaagatgattggattcagatattggagactgatatgtggcgtttatcaga |
283 |
Q |
| |
|
|| || | || ||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
6591396 |
ttctctgtaaccgaatggatgaagatattggagactgatatgtggcatttatcaga |
6591451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 208
Target Start/End: Complemental strand, 6169025 - 6168900
Alignment:
| Q |
83 |
ttggagtttatttgttacgcatgcttttcaaggcaaaagtgagtgtgaatatctaaatcttgaatcaattggcaggaaaatagtgaacaagtgtggaggg |
182 |
Q |
| |
|
||||||||||||||| | ||||||||| |||||| | | || |||||||| |||||||||||| ||||| | ||||||||| | || ||||| ||| |
|
|
| T |
6169025 |
ttggagtttatttgtaagacatgcttttgaaggcaggaatatgtttgaatatccaaatcttgaatcgattggtatgaaaatagtagaaaaatgtgggggg |
6168926 |
T |
|
| Q |
183 |
ctgcctttagctataaaatcattggg |
208 |
Q |
| |
|
|||||| ||| ||||| ||||||| |
|
|
| T |
6168925 |
tcgccttttgctctaaaaacattggg |
6168900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 208
Target Start/End: Complemental strand, 6245421 - 6245296
Alignment:
| Q |
83 |
ttggagtttatttgttacgcatgcttttcaaggcaaaagtgagtgtgaatatctaaatcttgaatcaattggcaggaaaatagtgaacaagtgtggaggg |
182 |
Q |
| |
|
||||||||||||||| | ||||||||| |||||| | | || |||||||| |||||||||||| ||||| | ||||||||| | || ||||| ||| |
|
|
| T |
6245421 |
ttggagtttatttgtaagacatgcttttgaaggcaggaatatgtttgaatatccaaatcttgaatcgattggtatgaaaatagtagaaaaatgtgggggg |
6245322 |
T |
|
| Q |
183 |
ctgcctttagctataaaatcattggg |
208 |
Q |
| |
|
|||||||||| | ||| ||||||| |
|
|
| T |
6245321 |
tcgcctttagctctgaaaacattggg |
6245296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 321
Target Start/End: Original strand, 6722154 - 6722227
Alignment:
| Q |
248 |
tcagatattggagactgatatgtggcgtttatcagacagggaccacaccattaactcagtactgagattgagtt |
321 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||| | || ||| ||||||| | ||||| |||||||||| |
|
|
| T |
6722154 |
tcagatattggagactgatttgtggtgtttatcagagggtgagaacaacattaaccccgtactaagattgagtt |
6722227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 36 - 321
Target Start/End: Original strand, 7353 - 7638
Alignment:
| Q |
36 |
aaatccaccaagttatttgatttacaacaattggataaaagcaattgttggagtttatttgttacgcatgcttttcaaggcaaaagtgagtgtgaatatc |
135 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| || |||||||||||||| ||||||| ||||||||||| |
|
|
| T |
7353 |
aaatcaaccaaattatttgatttacaacaattggaaaaaagcaattgttggagattatttgtgacacatgcttttcaaggaaaaagtgtgtgtgaatatc |
7452 |
T |
|
| Q |
136 |
taaatcttgaatcaattggcaggaaaatagtgaacaagtgtggagggctgcctttagctataaaatcattgggccaacttttgcggaaaaagtttactca |
235 |
Q |
| |
|
|||||||||| ||||||| | |||||||||| |||||||||||||| |||||||||||||||||||||||| |||||| |||| | ||| ||| || | |
|
|
| T |
7453 |
caaatcttgaaacaattgggaagaaaatagtggacaagtgtggagggttgcctttagctataaaatcattggcacaacttctgcgtagaaaattttctga |
7552 |
T |
|
| Q |
236 |
agatgattggattcagatattggagactgatatgtggcgtttatcagacagggaccacaccattaactcagtactgagattgagtt |
321 |
Q |
| |
|
| |||| |||||| ||||||||||||| || |||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7553 |
acatgaatggattaagatattggagaccgacatgtggcgtttatcagacggggatcacaccattaactcagtactgagattgagtt |
7638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 273
Target Start/End: Original strand, 6573214 - 6573408
Alignment:
| Q |
79 |
attgttggagtttatttgttacgcatgcttttcaaggcaaaagtgagtgtgaatatctaaatcttgaatcaattggcaggaaaatagtgaacaagtgtgg |
178 |
Q |
| |
|
||||||||||||||||||| | |||||||||| ||| |||| || || ||| |||| |||||||||||| ||||||| | | || || |||| ||||| |
|
|
| T |
6573214 |
attgttggagtttatttgtgaaacatgcttttcgaggaaaaaatgtgtttgactatccaaatcttgaatcgattggcaaggagattgtagacaaatgtgg |
6573313 |
T |
|
| Q |
179 |
agggctgcctttagctataaaatcattgggccaacttttgcggaaaaagtttactcaagatgattggattcagatattggagactgatatgtggc |
273 |
Q |
| |
|
|||| |||||||||| | ||| ||||||| | || |||| | ||| ||| |||| | ||| ||| || |||||||||| ||||||||||||| |
|
|
| T |
6573314 |
agggttgcctttagccgtgaaaacattggggaatctcttgcaaagaaaattttctcagggtgaatggtttaagatattggaaactgatatgtggc |
6573408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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