View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17279_high_14 (Length: 237)
Name: NF17279_high_14
Description: NF17279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17279_high_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 29189015 - 29189220
Alignment:
| Q |
17 |
tctaattcatgtggcccatttattattttcattttattacattgactaattaatgtaaggttaggtaggtgggtattttcagagcttagaaggggcccat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29189015 |
tctaattcatgtggcccatttattattttcattttattacattgactaattaatgtaaggttaggtaggtgggtattttcagagcttagaaggggcccat |
29189114 |
T |
|
| Q |
117 |
gacaataatttagtgaaatacagtggtctttttgttcacatatatgaaagttccattaatttctgtgtactagaaagattcatcacacaattgcttgctt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29189115 |
gacaataatttagtgaaatacagtggtctttttgttcacatatatgaaagttccattaacttctgtgtactagaaagattcatcacacaattgcttgctt |
29189214 |
T |
|
| Q |
217 |
gtgttt |
222 |
Q |
| |
|
|||||| |
|
|
| T |
29189215 |
gtgttt |
29189220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University