View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17279_high_2 (Length: 715)

Name: NF17279_high_2
Description: NF17279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17279_high_2
NF17279_high_2
[»] chr1 (1 HSPs)
chr1 (8-698)||(44878863-44879553)


Alignment Details
Target: chr1 (Bit Score: 667; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 667; E-Value: 0
Query Start/End: Original strand, 8 - 698
Target Start/End: Complemental strand, 44879553 - 44878863
Alignment:
Q  8 cgaagaaaattatgacagtcaattttgtgcgtggagatgtgattttgacgtgaagtccatgtggatcgtcacatattgatttaacgtgtcacacgatgtt 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  44879553 cgaacaaaattatgacagtcaattttgtgcgtggagatgtgattttgacgtgaagtccatgtggatcgtcacatattcatttaacgtgtcacacgatgtt 44879454  T
Q  108 gtctaatgaatgaatttaatgcagggactgtttgattgatgcgtcacagggagagaagttttgctttcagtaaaatttgttgccaacagtttatatattt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44879453 gtctaatgaatgaatttaatgcagggactgtttgattgatgcgtcacagggagagaagttttgctttcagtaaaatttgttgccaacagtttatatattt 44879354  T
Q  208 tgtaggtgggtttggaagtgtgtataaaggaagcctcggagatggtactctaattgcagtgaagaaacttgacaagatattgcctcatggagagaaagag 307  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44879353 tgtaggtggatttggaagtgtgtataaaggaagcctcggagatggtactctaattgcagtgaagaaacttgacaagatattgcctcatggagagaaagag 44879254  T
Q  308 tttataactgaagtaaacacaattggctcaatgcatcatatgaatttggttcgtctatgcggtttttgttctgagggaccacacaggtgtactatattta 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44879253 tttataactgaagtaaacacaattggctcaatgcatcatatgaatttggttcgtctatgcggtttttgttctgagggaccacacaggtgtactatattta 44879154  T
Q  408 caattttatcattctttacccgatcaagcgaatattgtttgaattggatttaactcattcataagacttaaaatctcaatggtttaattggcttgagtaa 507  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44879153 caattttatcattctttacccgatccagcgaatattgttttaattggatttaagtcattcataagacttaaaatctcaatggtttaattggcttgagtaa 44879054  T
Q  508 tatttgtttggcaggcttctagtgtacgagttcatgaagaatggttcattggataaatggatcttcccttcatatcgagggcgagatagattgctagatt 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44879053 tatttgtttggcaggcttctagtgtacgagttcatgaagaatggttcattggataaatggatcttcccttcatatcgagggcgagatagattgctagatt 44878954  T
Q  608 ggcaaactcgtttcgatatagccataaatactgcacaggggattgcatactttcatgagcaatgcagaaataggataatacattgtgatat 698  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44878953 ggcaaactcgtttcgatatagccataaatactgcacaggggattgcatactttcatgagcaatgcagaaataggataatacattgtgatat 44878863  T

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