View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17279_high_4 (Length: 463)
Name: NF17279_high_4
Description: NF17279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17279_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 41342756 - 41342995
Alignment:
| Q |
18 |
atgaaagcacgatcagggtcatttacaatgggtgataaggtaccatcataatctaaaaatacgacgatccttttcccaatggcagctttcatcaatctat |
117 |
Q |
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| T |
41342756 |
atgaaagcacgatcagggtcatttacaatgggtgataaggtaccatcataatctaaaaatacgacgatccttttcccaatggcagctttcatcaatctat |
41342855 |
T |
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| Q |
118 |
caaacgagctcaatgcagaaggatactttacctagtaataataataatgcatgccaacaaagatcacatacaatgaccatgattaattaataattacaaa |
217 |
Q |
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| T |
41342856 |
caaacgagctcaatgcagaagggtgctttacctag---taataataatgcatgccaacaaagatcacatacaatgaccatgattaattaataattacaaa |
41342952 |
T |
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| Q |
218 |
cttcaatctaggcatgcacgtcatattatcaactgctagttagta |
262 |
Q |
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| T |
41342953 |
catcaatctaggcatgcacgtc--attatcaactgcaagttagta |
41342995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 260 - 447
Target Start/End: Original strand, 41343037 - 41343229
Alignment:
| Q |
260 |
gtaatgtaatgtacatttatatataactttaaaataatatgtcgatatacacgtataatttcaacataaaaatcattt-----tcttgtgtacatgtttg |
354 |
Q |
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| T |
41343037 |
gtaatgtaatgtacatttatatataactttaaaataatatgtcgatatacacgtataatttcaacataaaaatcatttaattttcttgtgtacatgtttg |
41343136 |
T |
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| Q |
355 |
tctgttcacaagaaacgtggaatgaattttccgaagactatgtaattgatttgtgccgtccgtccgatatcaaattggtaactcagattgtgt |
447 |
Q |
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| T |
41343137 |
tctgttcacaagaaacgtggaatgaattttctgaagattatgtaattgatttgtgccgtccgtccgatatcaaattggtaactcagattgtgt |
41343229 |
T |
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