View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17279_high_8 (Length: 345)

Name: NF17279_high_8
Description: NF17279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17279_high_8
NF17279_high_8
[»] chr3 (5 HSPs)
chr3 (176-328)||(7238804-7238957)
chr3 (1-131)||(7239011-7239141)
chr3 (175-267)||(41361354-41361446)
chr3 (169-219)||(7238945-7238995)
chr3 (174-219)||(17647752-17647797)
[»] chr5 (4 HSPs)
chr5 (169-265)||(32303655-32303751)
chr5 (119-150)||(35447085-35447116)
chr5 (180-221)||(8254755-8254796)
chr5 (174-214)||(42923937-42923977)
[»] chr4 (11 HSPs)
chr4 (124-225)||(6083667-6083767)
chr4 (174-214)||(36138985-36139025)
chr4 (174-264)||(42096778-42096869)
chr4 (170-219)||(30211951-30212000)
chr4 (170-219)||(37182235-37182284)
chr4 (174-264)||(36139016-36139107)
chr4 (126-221)||(42096700-42096794)
chr4 (169-214)||(53979061-53979106)
chr4 (176-221)||(55301391-55301436)
chr4 (169-213)||(23806243-23806287)
chr4 (174-214)||(56210958-56210998)
[»] chr2 (2 HSPs)
chr2 (172-264)||(13387367-13387459)
chr2 (172-219)||(44069891-44069938)
[»] chr6 (3 HSPs)
chr6 (174-227)||(2744163-2744216)
chr6 (171-214)||(2146778-2146821)
chr6 (171-219)||(3607022-3607070)
[»] chr8 (4 HSPs)
chr8 (178-267)||(15020034-15020123)
chr8 (174-268)||(5995179-5995274)
chr8 (176-214)||(5995150-5995188)
chr8 (174-219)||(157550-157595)
[»] scaffold0254 (1 HSPs)
scaffold0254 (171-214)||(23239-23282)
[»] chr1 (6 HSPs)
chr1 (171-214)||(10608940-10608983)
chr1 (119-150)||(27664051-27664082)
chr1 (171-221)||(31847696-31847746)
chr1 (172-259)||(622841-622929)
chr1 (171-219)||(622913-622961)
chr1 (169-221)||(14210649-14210701)
[»] chr7 (1 HSPs)
chr7 (124-158)||(3557227-3557261)


Alignment Details
Target: chr3 (Bit Score: 118; Significance: 4e-60; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 176 - 328
Target Start/End: Complemental strand, 7238957 - 7238804
Alignment:
Q  176 tgagttaactcacgcatgtgcatttt-caacgtgagttaagtcacattggatgtgaattaacaaaaatggatgggagaagagcaattctcaaatgataat 274  Q
    |||||||| ||||| | ||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7238957 tgagttaagtcacgtaggtgcatttttcaacgtgagttaaatcacgttggatgtgaattaacaaaaatggatgggagaagagcaattctcaaatgataat 7238858  T
Q  275 gcttataagataacgctagcatgcgaatattatagtgttaatgttatttataat 328  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  7238857 gcttataagataacaccagcatgcgaatattatagtgttaatgttatttataat 7238804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 7239141 - 7239011
Alignment:
Q  1 ctgctagagaaacaaaagcagataatggactcacaacaaaatgaagttccctcatcatccaactctaatggatcacatgtctcccctagtaagtttctac 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| | | || ||||||||||||||||||||||||||||||||||||||||||    
T  7239141 ctgctagagaaacaaaaggagataatggactcacaacaaaatgaagttccattaccacccaactctaatggatcacatgtctcccctagtaagtttctac 7239042  T
Q  101 atacataggataaatgataagataattgctc 131  Q
    |||||||||| ||||||||||||||||||||    
T  7239041 atacataggaaaaatgataagataattgctc 7239011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 267
Target Start/End: Original strand, 41361354 - 41361446
Alignment:
Q  175 gtgagttaactcacgcatgtgcattttcaacgtgagttaagtcacattggatgtgaattaacaaaaatggatgggagaagagcaattctcaaa 267  Q
    |||| |||||||||  | |||||||||||||| ||||||| |||||| ||| | |||| ||||||||   | |||||||||||||||| ||||    
T  41361354 gtgaattaactcacataggtgcattttcaacgcgagttaactcacataggacgggaatgaacaaaaacaaaagggagaagagcaattcccaaa 41361446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 7238995 - 7238945
Alignment:
Q  169 tcgagcgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcac 219  Q
    |||||||||| |||||||||| | ||| ||||||||| |||||||||||||    
T  7238995 tcgagcgtgaattaactcacgtaagtgtattttcaacatgagttaagtcac 7238945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 17647752 - 17647797
Alignment:
Q  174 cgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcac 219  Q
    |||||||||||||||| | ||||||||||||||||| |||| ||||    
T  17647752 cgtgagttaactcacgtaggtgcattttcaacgtgatttaactcac 17647797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 9e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 169 - 265
Target Start/End: Original strand, 32303655 - 32303751
Alignment:
Q  169 tcgagcgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcacattggatgtgaattaacaaaaatggatgggagaagagcaattctca 265  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||| |||||| ||| |  ||| | |||||| |||||||||||||||||||||||    
T  32303655 tcgagcgtgagttaactcacgcatgtgtattttcagcgtgagttaactcacataggacggaaatgagcaaaaacggatgggagaagagcaattctca 32303751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 150
Target Start/End: Complemental strand, 35447116 - 35447085
Alignment:
Q  119 aagataattgctcttctcccatttagaattgc 150  Q
    ||||||||||||||||||||||||||||||||    
T  35447116 aagataattgctcttctcccatttagaattgc 35447085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 8254755 - 8254796
Alignment:
Q  180 ttaactcacgcatgtgcattttcaacgtgagttaagtcacat 221  Q
    ||||||||||||||||||||||||  ||||||||| ||||||    
T  8254755 ttaactcacgcatgtgcattttcagtgtgagttaactcacat 8254796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 42923977 - 42923937
Alignment:
Q  174 cgtgagttaactcacgcatgtgcattttcaacgtgagttaa 214  Q
    |||| ||||||||| ||| ||||||||||||||||||||||    
T  42923977 cgtgtgttaactcatgcaggtgcattttcaacgtgagttaa 42923937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 225
Target Start/End: Original strand, 6083667 - 6083767
Alignment:
Q  124 aattgctcttctcccatttagaattgctcgttcctgtnnnnnnnntcgagcgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcacattg 223  Q
    |||||||||||||||||||||||||||||||||| ||        || || ||||||||||||||||| ||||||||||  |||||||||| |||| |||    
T  6083667 aattgctcttctcccatttagaattgctcgttcccgt-caaaaagtcaagtgtgagttaactcacgcaggtgcattttcggcgtgagttaactcacgttg 6083765  T
Q  224 ga 225  Q
    ||    
T  6083766 ga 6083767  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 36138985 - 36139025
Alignment:
Q  174 cgtgagttaactcacgcatgtgcattttcaacgtgagttaa 214  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  36138985 cgtgagttaactcacgcatgtgcattttcaacgtgagttaa 36139025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 264
Target Start/End: Original strand, 42096778 - 42096869
Alignment:
Q  174 cgtgagttaactcacgcatgtgcatttt-caacgtgagttaagtcacattggatgtgaattaacaaaaatggatgggagaagagcaattctc 264  Q
    |||||||||||||||  | ||||||||| || |||||||||| |||| ||||||  |||| | ||||||| |||||||||||||||||||||    
T  42096778 cgtgagttaactcacataggtgcatttttcagcgtgagttaactcacgttggataggaatgagcaaaaatagatgggagaagagcaattctc 42096869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 30211951 - 30212000
Alignment:
Q  170 cgagcgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcac 219  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||| ||||    
T  30211951 cgagcatgagttaactcacacatgtgcattttcaacgtgagttaactcac 30212000  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 219
Target Start/End: Complemental strand, 37182284 - 37182235
Alignment:
Q  170 cgagcgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcac 219  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||| ||||    
T  37182284 cgagcgtaagttaactcacacatgtgcattttcaacgtgagttaactcac 37182235  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 264
Target Start/End: Original strand, 36139016 - 36139107
Alignment:
Q  174 cgtgagttaactcacgcatgtgcatttt-caacgtgagttaagtcacattggatgtgaattaacaaaaatggatgggagaagagcaattctc 264  Q
    |||||||||||||| | ||||| ||||| || |||||||||| |||  ||||||| |||| | ||||||   ||||||||||||||||||||    
T  36139016 cgtgagttaactcatgtatgtgaatttttcagcgtgagttaactcatgttggatgagaatgagcaaaaacatatgggagaagagcaattctc 36139107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 221
Target Start/End: Original strand, 42096700 - 42096794
Alignment:
Q  126 ttgctcttctcccatttagaattgctcgttcctgtnnnnnnnntcgagcgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcacat 221  Q
    ||||||||||||| |||||||||||||||||  ||        |||| |||||||||||||||| |  | ||||||||||||||||||| ||||||    
T  42096700 ttgctcttctcccgtttagaattgctcgttctcgtagaaaag-tcgaacgtgagttaactcacgtagatacattttcaacgtgagttaactcacat 42096794  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 53979061 - 53979106
Alignment:
Q  169 tcgagcgtgagttaactcacgcatgtgcattttcaacgtgagttaa 214  Q
    |||| ||||||||||||||| |||||| ||||||| ||||||||||    
T  53979061 tcgaacgtgagttaactcacacatgtgtattttcagcgtgagttaa 53979106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 55301391 - 55301436
Alignment:
Q  176 tgagttaactcacgcatgtgcattttcaacgtgagttaagtcacat 221  Q
    ||||||| ||||||||||| ||||||||||||||||| | ||||||    
T  55301391 tgagttagctcacgcatgtacattttcaacgtgagttgactcacat 55301436  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 23806243 - 23806287
Alignment:
Q  169 tcgagcgtgagttaactcacgcatgtgcattttcaacgtgagtta 213  Q
    |||| |||||||||||||||| | ||| |||||||||||||||||    
T  23806243 tcgaacgtgagttaactcacgtaggtgtattttcaacgtgagtta 23806287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 56210998 - 56210958
Alignment:
Q  174 cgtgagttaactcacgcatgtgcattttcaacgtgagttaa 214  Q
    ||||||||||||||| | |||| ||||||||||||||||||    
T  56210998 cgtgagttaactcacacgtgtgtattttcaacgtgagttaa 56210958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 264
Target Start/End: Original strand, 13387367 - 13387459
Alignment:
Q  172 agcgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcacattggatgtgaattaacaaaaatggatgggagaagagcaattctc 264  Q
    |||||||||||||||||| ||||| ||||||| | |||||||| |||| | ||| | |||| ||||||||| |||| ||||||| ||||||||    
T  13387367 agcgtgagttaactcacgtatgtgtattttcatcatgagttaactcacgtaggacgagaatgaacaaaaatagatgagagaagaacaattctc 13387459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 44069891 - 44069938
Alignment:
Q  172 agcgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcac 219  Q
    |||||||||||||||||||| ||| |||||||||||||||||| ||||    
T  44069891 agcgtgagttaactcacgcaggtgtattttcaacgtgagttaactcac 44069938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 2744163 - 2744216
Alignment:
Q  174 cgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcacattggatg 227  Q
    |||||||||||||||||||||||||||| |||||||||||| |||  |||||||    
T  2744163 cgtgagttaactcacgcatgtgcatttttaacgtgagttaactcatgttggatg 2744216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 214
Target Start/End: Original strand, 2146778 - 2146821
Alignment:
Q  171 gagcgtgagttaactcacgcatgtgcattttcaacgtgagttaa 214  Q
    |||||||||| |||||||||||||| | ||||||||||||||||    
T  2146778 gagcgtgagtgaactcacgcatgtgtaatttcaacgtgagttaa 2146821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 3607070 - 3607022
Alignment:
Q  171 gagcgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcac 219  Q
    |||||||| || ||||||||||||| ||||| |||||||||||| ||||    
T  3607070 gagcgtgaattgactcacgcatgtgtatttttaacgtgagttaactcac 3607022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 267
Target Start/End: Complemental strand, 15020123 - 15020034
Alignment:
Q  178 agttaactcacgcatgtgcattttcaacgtgagttaagtcacattggatgtgaattaacaaaaatggatgggagaagagcaattctcaaa 267  Q
    |||||||| ||||| ||| ||||||||||||| |||| |||  |||||| | ||| | ||||||  ||| ||||||||||||||||||||    
T  15020123 agttaacttacgcaggtgtattttcaacgtgaattaactcatgttggatataaatgagcaaaaacagataggagaagagcaattctcaaa 15020034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 268
Target Start/End: Original strand, 5995179 - 5995274
Alignment:
Q  174 cgtgagttaactcacgcatgtgcatttt-caacgtgagttaagtcacattggatgtgaattaacaaaaatggatgggagaagagcaattctcaaat 268  Q
    ||||||||||||| |  ||||| ||||| || |||||||||| |||| ||| |  ||||| | ||||||  |||||||||||||||||||||||||    
T  5995179 cgtgagttaactcgcatatgtgtatttttcagcgtgagttaactcacgttgaacatgaatgagcaaaaaaagatgggagaagagcaattctcaaat 5995274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 5995150 - 5995188
Alignment:
Q  176 tgagttaactcacgcatgtgcattttcaacgtgagttaa 214  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  5995150 tgagttaactcacgcatgtgtattttcgacgtgagttaa 5995188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 157595 - 157550
Alignment:
Q  174 cgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcac 219  Q
    ||||| |||||||||||||||||||||||||  |||||||| ||||    
T  157595 cgtgaattaactcacgcatgtgcattttcaatatgagttaattcac 157550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 214
Target Start/End: Original strand, 23239 - 23282
Alignment:
Q  171 gagcgtgagttaactcacgcatgtgcattttcaacgtgagttaa 214  Q
    |||||||||| |||||||||||||| | ||||||||||||||||    
T  23239 gagcgtgagtgaactcacgcatgtgtaatttcaacgtgagttaa 23282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 214
Target Start/End: Complemental strand, 10608983 - 10608940
Alignment:
Q  171 gagcgtgagttaactcacgcatgtgcattttcaacgtgagttaa 214  Q
    |||||||||||||||||||||| |||||||| ||||||| ||||    
T  10608983 gagcgtgagttaactcacgcatatgcatttttaacgtgaattaa 10608940  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 150
Target Start/End: Complemental strand, 27664082 - 27664051
Alignment:
Q  119 aagataattgctcttctcccatttagaattgc 150  Q
    ||||||||||||||||||||||||||||||||    
T  27664082 aagataattgctcttctcccatttagaattgc 27664051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 31847746 - 31847696
Alignment:
Q  171 gagcgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcacat 221  Q
    |||| |||||||||||||||| ||||||||| | |||||||||| ||||||    
T  31847746 gagcatgagttaactcacgcaagtgcatttttaccgtgagttaactcacat 31847696  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 259
Target Start/End: Complemental strand, 622929 - 622841
Alignment:
Q  172 agcgtgagttaactcacgcatgtgcatttt-caacgtgagttaagtcacattggatgtgaattaacaaaaatggatgggagaagagcaa 259  Q
    |||||||||||||||||| | ||| ||||| ||||||||||||| |||| | ||| | |||| | ||||||   |||||||||||||||    
T  622929 agcgtgagttaactcacgtaggtgtatttttcaacgtgagttaactcacgtaggacgggaatgagcaaaaacaaatgggagaagagcaa 622841  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 622961 - 622913
Alignment:
Q  171 gagcgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcac 219  Q
    |||| ||||||||||| |||||||| ||||||| |||||||||| ||||    
T  622961 gagcctgagttaactcgcgcatgtgtattttcagcgtgagttaactcac 622913  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 14210649 - 14210701
Alignment:
Q  169 tcgagcgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcacat 221  Q
    ||||| ||||||||||  |||||  ||||||||||||||||||||| ||||||    
T  14210649 tcgagtgtgagttaacaaacgcagatgcattttcaacgtgagttaactcacat 14210701  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 158
Target Start/End: Complemental strand, 3557261 - 3557227
Alignment:
Q  124 aattgctcttctcccatttagaattgctcgttcct 158  Q
    ||||||||||||||||||||||||||||| |||||    
T  3557261 aattgctcttctcccatttagaattgctcattcct 3557227  T

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